Wall clock time and date at job start Mon Mar 30 2020 01:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45205 * 109.46692 * 2 1 4 4 C 1.34838 * 116.99501 * 180.02562 * 3 2 1 5 5 C 1.34430 * 119.99734 * 180.02562 * 4 3 2 6 6 C 1.41765 * 120.00322 * 359.97438 * 5 4 3 7 7 O 1.21751 * 119.99592 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00404 * 180.02562 * 6 5 4 9 9 C 1.39847 * 120.00091 * 175.50695 * 8 6 5 10 10 C 1.38978 * 120.03547 * 215.15961 * 9 8 6 11 11 C 1.38157 * 120.06144 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.14032 * 359.73710 * 11 10 9 13 13 C 1.38907 * 120.07460 * 0.51857 * 12 11 10 14 14 O 1.35751 * 120.03425 * 179.76356 * 13 12 11 15 15 C 1.34836 * 116.99582 * 354.34632 * 14 13 12 16 16 H 1.07995 * 120.00241 * 5.02786 * 15 14 13 17 17 C 1.38656 * 119.99668 * 185.02470 * 15 14 13 18 18 N 1.31556 * 120.00260 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99938 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47299 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47355 * 120.00006 * 19 17 15 22 22 H 1.48507 * 109.46985 * 240.00013 * 19 17 15 23 23 C 1.38731 * 120.03632 * 35.13906 * 9 8 6 24 24 H 1.09003 * 109.47030 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46964 * 299.99830 * 1 2 3 26 26 H 1.08997 * 109.47353 * 60.00122 * 1 2 3 27 27 H 1.09003 * 109.46964 * 240.00170 * 2 1 3 28 28 H 1.08997 * 109.47353 * 119.99877 * 2 1 3 29 29 H 1.07996 * 120.00332 * 359.97438 * 4 3 2 30 30 H 1.08002 * 120.00274 * 180.02562 * 5 4 3 31 31 H 0.96999 * 119.99920 * 355.50782 * 8 6 5 32 32 H 1.08004 * 119.97262 * 359.97438 * 10 9 8 33 33 H 1.08009 * 119.92685 * 180.02562 * 11 10 9 34 34 H 1.08005 * 119.96177 * 180.25439 * 12 11 10 35 35 H 0.96994 * 120.00576 * 180.02562 * 18 17 15 36 36 H 1.08004 * 120.07019 * 0.04073 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3507 1.5457 -0.0005 5 6 3.8645 2.7879 0.0000 6 6 3.0009 3.9122 0.0005 7 8 1.7939 3.7526 0.0010 8 7 3.5160 5.1577 0.0005 9 6 2.6675 6.2653 -0.0939 10 6 3.0739 7.3954 -0.7933 11 6 2.2359 8.4897 -0.8873 12 6 0.9896 8.4623 -0.2914 13 6 0.5796 7.3378 0.4135 14 8 -0.6431 7.3137 1.0028 15 6 -1.3626 8.4535 0.9665 16 1 -0.9959 9.3062 0.4146 17 6 -2.5733 8.5306 1.6380 18 7 -3.0198 7.4920 2.3107 19 14 -3.5704 10.1094 1.5873 20 1 -2.8543 11.1212 0.7696 21 1 -4.8998 9.8361 0.9847 22 1 -3.7496 10.6262 2.9680 23 6 1.4189 6.2370 0.5102 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0086 0.6893 -0.0005 30 1 4.9352 2.9295 -0.0009 31 1 4.4753 5.2858 0.0659 32 1 4.0458 7.4182 -1.2638 33 1 2.5538 9.3667 -1.4317 34 1 0.3351 9.3179 -0.3702 35 1 -3.8669 7.5458 2.7801 36 1 1.1009 5.3601 1.0545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001624808501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:48 Heat of formation + Delta-G solvation = -77.095778 kcal Electronic energy + Delta-G solvation = -20571.283964 eV Core-core repulsion = 17214.489404 eV Total energy + Delta-G solvation = -3356.794560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.53067 -40.46248 -39.58253 -38.06493 -35.35441 -34.25381 -33.70786 -31.76112 -30.97628 -29.82185 -27.34745 -25.13294 -24.00559 -23.40519 -22.66629 -20.90322 -19.91723 -19.27547 -18.78370 -17.31927 -16.93022 -16.86656 -16.72487 -16.25482 -16.07486 -15.73481 -15.48005 -15.31660 -14.43769 -14.38580 -14.21801 -13.88581 -13.58286 -13.48931 -13.21506 -13.14292 -12.89237 -12.66874 -12.36022 -12.28949 -12.08623 -11.90891 -11.39129 -11.13502 -10.75683 -10.54509 -9.63167 -9.25419 -8.79232 -8.46396 -6.16297 0.30917 0.70493 0.78092 1.33869 1.44103 1.54326 2.16697 2.33556 2.38454 2.50712 2.87045 3.18435 3.53952 3.79398 4.07083 4.11827 4.16674 4.37372 4.37666 4.45688 4.53086 4.67138 4.76175 4.78800 4.90125 4.92411 5.10642 5.15124 5.20247 5.25761 5.50388 5.57165 5.65431 5.76504 6.04417 6.26939 6.44585 6.75319 6.97035 7.47358 7.81226 8.78189 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.004424 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.739622 B = 6327.025464 C = 7817.649853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.044 3.956 3 O -0.332 6.332 4 C 0.154 3.846 5 C -0.332 4.332 6 C 0.530 3.470 7 O -0.572 6.572 8 N -0.662 5.662 9 C 0.187 3.813 10 C -0.209 4.209 11 C -0.049 4.049 12 C -0.259 4.259 13 C 0.125 3.875 14 O -0.238 6.238 15 C -0.415 4.415 16 H 0.106 0.894 17 C -0.029 4.029 18 N -0.926 5.926 19 Si 1.026 2.974 20 H -0.247 1.247 21 H -0.268 1.268 22 H -0.267 1.267 23 C -0.216 4.216 24 H 0.109 0.891 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.194 0.806 30 H 0.188 0.812 31 H 0.428 0.572 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.123 0.877 35 H 0.272 0.728 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.870 -11.554 -6.607 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.030 4.030 3 O -0.242 6.242 4 C 0.085 3.915 5 C -0.354 4.354 6 C 0.325 3.675 7 O -0.453 6.453 8 N -0.309 5.309 9 C 0.092 3.908 10 C -0.229 4.229 11 C -0.067 4.067 12 C -0.279 4.279 13 C 0.074 3.926 14 O -0.145 6.145 15 C -0.491 4.491 16 H 0.124 0.876 17 C -0.225 4.225 18 N -0.565 5.565 19 Si 0.845 3.155 20 H -0.170 1.170 21 H -0.193 1.193 22 H -0.192 1.192 23 C -0.238 4.238 24 H 0.127 0.873 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.211 0.789 30 H 0.205 0.795 31 H 0.267 0.733 32 H 0.181 0.819 33 H 0.178 0.822 34 H 0.141 0.859 35 H 0.081 0.919 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.600 -11.863 -6.380 21.377 hybrid contribution -0.554 0.398 0.399 0.790 sum 16.046 -11.465 -5.981 20.608 Atomic orbital electron populations 1.21816 0.94109 1.03707 1.01924 1.23626 0.95848 0.79631 1.03868 1.86747 1.21762 1.31432 1.84265 1.24001 0.83796 0.98757 0.84916 1.21548 1.01403 0.89742 1.22724 1.18138 0.88842 0.84419 0.76062 1.90935 1.17887 1.86308 1.50136 1.43322 1.10420 1.03722 1.73461 1.17413 0.89859 0.88625 0.94920 1.20913 1.03220 0.93336 1.05450 1.21039 0.91239 0.98627 0.95835 1.21294 1.00398 0.99164 1.07010 1.19703 0.85695 0.94714 0.92446 1.83966 1.24241 1.37324 1.68933 1.21988 1.02517 0.90864 1.33717 0.87634 1.26759 0.97627 1.03356 0.94786 1.70241 1.21374 1.32433 1.32436 0.84437 0.77250 0.74834 0.79008 1.16988 1.19349 1.19172 1.20213 0.96508 0.98133 1.08940 0.87279 0.93950 0.93513 0.88754 0.89106 0.78925 0.79456 0.73289 0.81927 0.82198 0.85910 0.91895 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 10.29 71.98 0.74 -2.58 16 2 C 0.04 0.74 6.85 71.98 0.49 1.24 16 3 O -0.33 -9.20 7.94 -58.82 -0.47 -9.67 16 4 C 0.15 2.88 10.43 66.95 0.70 3.58 16 5 C -0.33 -7.24 9.82 22.27 0.22 -7.02 16 6 C 0.53 18.62 7.40 85.11 0.63 19.25 16 7 O -0.57 -27.60 12.26 17.72 0.22 -27.39 16 8 N -0.66 -20.67 5.32 -311.48 -1.66 -22.32 16 9 C 0.19 7.54 6.29 38.16 0.24 7.78 16 10 C -0.21 -6.91 9.96 22.43 0.22 -6.69 16 11 C -0.05 -1.75 10.03 22.23 0.22 -1.53 16 12 C -0.26 -12.23 9.16 22.41 0.21 -12.03 16 13 C 0.13 7.15 6.64 22.56 0.15 7.30 16 14 O -0.24 -16.07 9.76 -22.82 -0.22 -16.29 16 15 C -0.41 -26.12 9.49 67.92 0.64 -25.47 16 16 H 0.11 6.02 5.20 -2.91 -0.02 6.00 16 17 C -0.03 -1.75 5.49 84.83 0.47 -1.28 16 18 N -0.93 -61.15 13.67 21.61 0.30 -60.86 16 19 Si 1.03 45.36 29.55 68.60 2.03 47.39 16 20 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 C -0.22 -11.47 8.63 22.51 0.19 -11.28 16 24 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.19 1.09 8.01 -2.91 -0.02 1.06 16 30 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.43 8.59 8.78 -92.71 -0.81 7.78 16 32 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 33 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.12 5.76 5.63 -2.91 -0.02 5.75 16 35 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 36 H 0.10 5.75 6.23 -2.91 -0.02 5.74 16 Total: -1.00 -96.44 317.37 5.62 -90.82 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.30 Total: 27.04 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 5.13 Total: -28.72 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -1.36 Total: -83.18 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.47 Total: -53.35 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -96.44 5.62 -90.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624808501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.728 kcal (2) G-P(sol) polarization free energy of solvation -96.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds