Wall clock time and date at job start Mon Mar 30 2020 01:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.46908 * 2 1 4 4 C 1.53004 * 109.47076 * 240.00333 * 2 1 3 5 5 N 1.46895 * 109.47211 * 64.99657 * 4 2 1 6 6 C 1.47961 * 111.00270 * 170.00151 * 5 4 2 7 7 C 1.53934 * 86.18427 * 222.41862 * 6 5 4 8 8 O 1.42895 * 113.73076 * 269.25870 * 7 6 5 9 9 C 1.50696 * 113.73266 * 138.07361 * 7 6 5 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 7 6 11 11 C 1.37885 * 119.99717 * 179.97438 * 9 7 6 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 7 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.47958 * 110.99863 * 70.64272 * 5 4 2 18 18 C 1.52999 * 109.47589 * 120.00021 * 2 1 3 19 19 S 1.81400 * 109.46906 * 295.00242 * 18 2 1 20 20 C 1.81404 * 101.91966 * 179.97438 * 19 18 2 21 21 O 1.42102 * 108.57991 * 294.48403 * 19 18 2 22 22 O 1.42103 * 108.58134 * 65.50959 * 19 18 2 23 23 H 1.09003 * 109.47898 * 60.00007 * 1 2 3 24 24 H 1.08999 * 109.47415 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47003 * 299.99609 * 1 2 3 26 26 H 1.09005 * 109.46718 * 304.99775 * 4 2 1 27 27 H 1.08999 * 109.46778 * 185.00228 * 4 2 1 28 28 H 1.08996 * 113.76309 * 108.09300 * 6 5 4 29 29 H 1.09008 * 113.85816 * 336.74814 * 6 5 4 30 30 H 0.96697 * 114.00066 * 178.10080 * 8 7 6 31 31 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 32 32 H 1.08993 * 113.76569 * 23.26601 * 17 5 4 33 33 H 1.09005 * 113.75789 * 251.89882 * 17 5 4 34 34 H 1.08999 * 109.46665 * 54.99577 * 18 2 1 35 35 H 1.08991 * 109.47399 * 174.99825 * 18 2 1 36 36 H 1.08995 * 109.47458 * 59.99930 * 20 19 18 37 37 H 1.09004 * 109.46950 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.47034 * 299.99453 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6512 0.0375 -2.4456 6 6 2.3241 -0.4931 -3.6519 7 6 2.5495 0.9774 -4.0473 8 8 1.5000 1.5251 -4.8475 9 6 3.9207 1.2508 -4.6095 10 1 4.6364 0.4474 -4.7023 11 6 4.2612 2.5267 -5.0064 12 7 5.4576 2.7653 -5.4975 13 14 3.0229 3.9161 -4.8465 14 1 2.2207 4.0101 -6.0926 15 1 2.1222 3.6467 -3.6970 16 1 3.7417 5.1962 -4.6228 17 6 2.4198 1.2977 -2.5472 18 6 2.0400 -0.7212 1.2492 19 16 1.5601 0.2156 2.7266 20 6 2.2540 -0.8028 4.0578 21 8 2.2381 1.4644 2.7109 22 8 0.1433 0.1967 2.8343 23 1 -0.3635 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.6053 -1.7198 -1.2952 27 1 3.1262 -0.7994 -1.2056 28 1 1.6576 -1.0319 -4.3254 29 1 3.2447 -1.0370 -3.4400 30 1 1.6235 2.4571 -5.0739 31 1 5.6970 3.6628 -5.7770 32 1 3.3682 1.2782 -2.0104 33 1 1.8297 2.1900 -2.3381 34 1 1.6054 -1.7197 1.2951 35 1 3.1263 -0.7994 1.2055 36 1 3.3340 -0.8790 3.9318 37 1 2.0317 -0.3427 5.0207 38 1 1.8127 -1.7987 4.0209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653387257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:00 Heat of formation + Delta-G solvation = -70.584414 kcal Electronic energy + Delta-G solvation = -20491.669801 eV Core-core repulsion = 17270.601546 eV Total energy + Delta-G solvation = -3221.068255 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.52975 -37.15859 -36.47013 -35.99751 -34.18728 -32.42261 -30.05947 -28.79619 -27.35421 -25.90173 -25.41146 -22.62028 -20.08390 -19.09184 -19.01282 -17.42475 -16.88088 -16.45337 -16.22707 -16.11348 -15.21682 -15.02624 -14.27459 -14.06977 -13.57269 -13.52805 -13.46711 -13.05356 -12.94232 -12.67984 -12.43447 -12.13455 -12.10456 -11.97047 -11.54765 -11.44350 -11.30701 -11.11868 -11.00521 -10.87719 -10.49670 -10.43705 -10.06208 -9.96811 -9.27608 -8.88217 -8.58143 -8.02290 -6.32957 -4.37179 -0.23203 2.54654 3.08615 3.16224 3.23987 3.41771 3.77724 4.14153 4.30768 4.42887 4.46442 4.69213 4.76615 4.85689 4.94939 5.21878 5.28726 5.36259 5.51595 5.56127 5.70724 5.78445 5.91398 6.01109 6.11919 6.18940 6.30367 6.44694 6.54085 6.62430 6.89737 6.95034 7.34490 7.73130 8.14494 8.68518 8.69007 9.26827 10.79641 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027692 B = 0.004530 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.888363 B = 6179.590417 C = 6415.874603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.075 4.075 3 H 0.086 0.914 4 C 0.032 3.968 5 N -0.476 5.476 6 C 0.024 3.976 7 C 0.201 3.799 8 O -0.551 6.551 9 C -0.538 4.538 10 H 0.085 0.915 11 C 0.078 3.922 12 N -0.883 5.883 13 Si 0.860 3.140 14 H -0.268 1.268 15 H -0.253 1.253 16 H -0.286 1.286 17 C -0.033 4.033 18 C -0.602 4.602 19 S 2.417 3.583 20 C -0.660 4.660 21 O -0.938 6.938 22 O -0.936 6.936 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.348 0.652 31 H 0.269 0.731 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.695 -8.147 16.682 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.095 4.095 3 H 0.104 0.896 4 C -0.098 4.098 5 N -0.198 5.198 6 C -0.105 4.105 7 C 0.160 3.840 8 O -0.362 6.362 9 C -0.576 4.576 10 H 0.103 0.897 11 C -0.126 4.126 12 N -0.519 5.519 13 Si 0.688 3.312 14 H -0.194 1.194 15 H -0.178 1.178 16 H -0.213 1.213 17 C -0.162 4.162 18 C -0.732 4.732 19 S 2.600 3.400 20 C -0.809 4.809 21 O -0.935 6.935 22 O -0.933 6.933 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.199 0.801 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.977 -7.814 16.811 19.807 hybrid contribution 1.254 0.384 0.122 1.317 sum -5.723 -7.431 16.932 19.356 Atomic orbital electron populations 1.22195 0.93201 1.03066 1.04192 1.20824 0.97547 0.99666 0.91417 0.89568 1.22613 0.98191 0.97892 0.91123 1.68541 1.46216 1.04106 1.00972 1.23997 0.97052 0.97664 0.91749 1.20451 0.86517 0.90605 0.86389 1.86460 1.48728 1.28181 1.72785 1.21394 0.96866 0.96390 1.42904 0.89727 1.25006 0.95261 0.98608 0.93749 1.69875 1.19321 1.21989 1.40744 0.87305 0.81727 0.82378 0.79748 1.19442 1.17775 1.21266 1.25055 0.96238 0.93386 1.01545 1.30369 1.11821 1.14182 1.16877 1.07963 0.76192 0.77382 0.78477 1.30309 1.13902 1.16726 1.19950 1.93618 1.76256 1.37752 1.85878 1.93582 1.27334 1.86904 1.85464 0.90159 0.92299 0.91024 0.90971 0.94035 0.90106 0.90902 0.80065 0.92103 0.90848 0.90760 0.84921 0.84992 0.85405 0.85437 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 8.72 37.15 0.32 -1.98 16 2 C -0.07 -1.00 2.40 -90.62 -0.22 -1.22 16 3 H 0.09 1.28 7.41 -51.93 -0.38 0.89 16 4 C 0.03 0.48 4.21 -3.82 -0.02 0.46 16 5 N -0.48 -9.03 5.72 -238.22 -1.36 -10.40 16 6 C 0.02 0.49 7.36 -2.77 -0.02 0.47 16 7 C 0.20 4.80 1.05 -90.84 -0.10 4.71 16 8 O -0.55 -13.65 13.32 -35.23 -0.47 -14.12 16 9 C -0.54 -14.65 9.20 -34.44 -0.32 -14.97 16 10 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 11 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 12 N -0.88 -25.82 13.96 55.43 0.77 -25.04 16 13 Si 0.86 20.22 24.34 -169.99 -4.14 16.08 16 14 H -0.27 -6.11 7.06 56.52 0.40 -5.71 16 15 H -0.25 -5.68 5.28 56.52 0.30 -5.38 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 C -0.03 -0.70 5.63 -2.76 -0.02 -0.72 16 18 C -0.60 -5.20 5.26 37.16 0.20 -5.00 16 19 S 2.42 22.41 5.15 -107.50 -0.55 21.86 16 20 C -0.66 -3.30 10.62 101.05 1.07 -2.22 16 21 O -0.94 -12.87 18.10 -57.83 -1.05 -13.92 16 22 O -0.94 -11.55 15.46 -57.83 -0.89 -12.45 16 23 H 0.08 1.23 7.75 -51.93 -0.40 0.83 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.97 5.40 -51.93 -0.28 0.69 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 28 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.07 1.40 7.75 -51.92 -0.40 1.00 16 30 H 0.35 8.30 3.31 45.56 0.15 8.45 16 31 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.07 1.54 7.73 -51.93 -0.40 1.14 16 33 H 0.07 1.61 6.98 -51.93 -0.36 1.24 16 34 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -34.97 310.93 -7.72 -42.69 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.53 Total: 9.02 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 0.81 Total: -18.41 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.59 Total: -35.44 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -2.41 Total: -40.48 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.14 Total: 16.08 kcal Atomic # 16 Polarization: 22.41 SS G_CDS: -0.55 Total: 21.86 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.97 -7.72 -42.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653387257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.898 kcal (2) G-P(sol) polarization free energy of solvation -34.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds