Wall clock time and date at job start Mon Mar 30 2020 01:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.46908 * 2 1 4 4 C 1.53004 * 109.47076 * 240.00333 * 2 1 3 5 5 N 1.46895 * 109.47211 * 64.99657 * 4 2 1 6 6 C 1.47961 * 111.00270 * 170.00151 * 5 4 2 7 7 C 1.53934 * 86.18427 * 222.41862 * 6 5 4 8 8 O 1.42895 * 113.73076 * 269.25870 * 7 6 5 9 9 C 1.50696 * 113.73266 * 138.07361 * 7 6 5 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 7 6 11 11 C 1.37885 * 119.99717 * 179.97438 * 9 7 6 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 7 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.47958 * 110.99863 * 70.64272 * 5 4 2 18 18 C 1.52999 * 109.47589 * 120.00021 * 2 1 3 19 19 S 1.81400 * 109.46906 * 295.00242 * 18 2 1 20 20 C 1.81404 * 101.91966 * 179.97438 * 19 18 2 21 21 O 1.42102 * 108.57991 * 294.48403 * 19 18 2 22 22 O 1.42103 * 108.58134 * 65.50959 * 19 18 2 23 23 H 1.09003 * 109.47898 * 60.00007 * 1 2 3 24 24 H 1.08999 * 109.47415 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47003 * 299.99609 * 1 2 3 26 26 H 1.09005 * 109.46718 * 304.99775 * 4 2 1 27 27 H 1.08999 * 109.46778 * 185.00228 * 4 2 1 28 28 H 1.08996 * 113.76309 * 108.09300 * 6 5 4 29 29 H 1.09008 * 113.85816 * 336.74814 * 6 5 4 30 30 H 0.96697 * 114.00066 * 178.10080 * 8 7 6 31 31 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 32 32 H 1.08993 * 113.76569 * 23.26601 * 17 5 4 33 33 H 1.09005 * 113.75789 * 251.89882 * 17 5 4 34 34 H 1.08999 * 109.46665 * 54.99577 * 18 2 1 35 35 H 1.08991 * 109.47399 * 174.99825 * 18 2 1 36 36 H 1.08995 * 109.47458 * 59.99930 * 20 19 18 37 37 H 1.09004 * 109.46950 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.47034 * 299.99453 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6512 0.0375 -2.4456 6 6 2.3241 -0.4931 -3.6519 7 6 2.5495 0.9774 -4.0473 8 8 1.5000 1.5251 -4.8475 9 6 3.9207 1.2508 -4.6095 10 1 4.6364 0.4474 -4.7023 11 6 4.2612 2.5267 -5.0064 12 7 5.4576 2.7653 -5.4975 13 14 3.0229 3.9161 -4.8465 14 1 2.2207 4.0101 -6.0926 15 1 2.1222 3.6467 -3.6970 16 1 3.7417 5.1962 -4.6228 17 6 2.4198 1.2977 -2.5472 18 6 2.0400 -0.7212 1.2492 19 16 1.5601 0.2156 2.7266 20 6 2.2540 -0.8028 4.0578 21 8 2.2381 1.4644 2.7109 22 8 0.1433 0.1967 2.8343 23 1 -0.3635 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.6053 -1.7198 -1.2952 27 1 3.1262 -0.7994 -1.2056 28 1 1.6576 -1.0319 -4.3254 29 1 3.2447 -1.0370 -3.4400 30 1 1.6235 2.4571 -5.0739 31 1 5.6970 3.6628 -5.7770 32 1 3.3682 1.2782 -2.0104 33 1 1.8297 2.1900 -2.3381 34 1 1.6054 -1.7197 1.2951 35 1 3.1263 -0.7994 1.2055 36 1 3.3340 -0.8790 3.9318 37 1 2.0317 -0.3427 5.0207 38 1 1.8127 -1.7987 4.0209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653387257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:59 Heat of formation + Delta-G solvation = -102.271477 kcal Electronic energy + Delta-G solvation = -20493.043855 eV Core-core repulsion = 17270.601546 eV Total energy + Delta-G solvation = -3222.442309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15183 -37.99428 -37.68786 -36.96589 -35.71776 -34.54289 -30.59095 -30.26508 -28.26939 -27.62336 -27.08330 -24.14492 -21.29843 -20.79883 -19.77055 -19.35493 -18.13800 -17.79462 -17.22841 -17.04749 -16.65433 -16.26998 -15.54962 -15.40683 -15.22360 -14.74343 -14.54835 -14.02888 -13.90734 -13.90302 -13.74309 -13.50287 -13.28826 -12.98772 -12.90678 -12.74334 -12.50408 -12.34772 -12.29500 -12.21979 -11.96665 -11.88594 -11.70845 -11.15260 -11.04373 -10.86630 -10.43659 -9.62516 -8.46160 -6.55170 -0.88844 1.19668 1.27070 1.34712 1.93190 2.14714 2.71441 2.78436 3.01999 3.15329 3.50205 3.69323 3.76613 3.88141 4.04278 4.12645 4.19360 4.22675 4.36520 4.47063 4.52359 4.70866 4.75410 4.79195 4.83344 4.91696 4.98715 5.04990 5.11772 5.22660 5.33299 5.39819 5.50292 6.01639 6.22435 6.49578 6.75790 7.12841 8.69673 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027692 B = 0.004530 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.888363 B = 6179.590417 C = 6415.874603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 H 0.061 0.939 4 C 0.029 3.971 5 N -0.475 5.475 6 C 0.031 3.969 7 C 0.181 3.819 8 O -0.558 6.558 9 C -0.546 4.546 10 H 0.052 0.948 11 C 0.026 3.974 12 N -0.928 5.928 13 Si 0.916 3.084 14 H -0.253 1.253 15 H -0.239 1.239 16 H -0.284 1.284 17 C -0.023 4.023 18 C -0.596 4.596 19 S 2.410 3.590 20 C -0.633 4.633 21 O -0.996 6.996 22 O -0.976 6.976 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.349 0.651 31 H 0.272 0.728 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.170 0.830 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.136 0.864 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.471 -9.906 18.698 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.101 4.101 3 H 0.080 0.920 4 C -0.101 4.101 5 N -0.197 5.197 6 C -0.097 4.097 7 C 0.140 3.860 8 O -0.368 6.368 9 C -0.584 4.584 10 H 0.070 0.930 11 C -0.174 4.174 12 N -0.566 5.566 13 Si 0.742 3.258 14 H -0.179 1.179 15 H -0.163 1.163 16 H -0.210 1.210 17 C -0.153 4.153 18 C -0.726 4.726 19 S 2.599 3.401 20 C -0.786 4.786 21 O -0.993 6.993 22 O -0.973 6.973 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.201 0.799 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.188 0.812 35 H 0.174 0.826 36 H 0.170 0.830 37 H 0.154 0.846 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.787 -9.557 18.804 22.485 hybrid contribution 1.559 0.785 -0.465 1.806 sum -6.228 -8.772 18.340 21.262 Atomic orbital electron populations 1.22179 0.93640 1.03907 1.02859 1.20785 0.97276 0.98982 0.93051 0.92017 1.22757 0.98860 0.98619 0.89845 1.68477 1.45616 1.03316 1.02294 1.23950 0.97791 0.95541 0.92463 1.20684 0.84610 0.93411 0.87283 1.86453 1.48697 1.28466 1.73229 1.21611 0.98128 0.95661 1.42966 0.92983 1.25788 0.96990 1.01218 0.93400 1.70003 1.21382 1.22820 1.42384 0.86362 0.79719 0.78995 0.80753 1.17892 1.16347 1.21017 1.24824 0.96487 0.94685 0.99304 1.30289 1.13570 1.15072 1.13694 1.07739 0.75238 0.77367 0.79759 1.30059 1.15132 1.16620 1.16814 1.93550 1.76811 1.41892 1.87052 1.93528 1.29817 1.87659 1.86299 0.92557 0.90343 0.91349 0.88397 0.93465 0.89453 0.90015 0.79902 0.91887 0.90994 0.91269 0.81183 0.82554 0.83027 0.84555 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.38 8.72 71.98 0.63 -3.75 16 2 C -0.08 -2.02 2.40 -10.80 -0.03 -2.05 16 3 H 0.06 1.83 7.41 -2.39 -0.02 1.81 16 4 C 0.03 0.78 4.21 86.31 0.36 1.14 16 5 N -0.47 -17.32 5.72 -910.80 -5.21 -22.53 16 6 C 0.03 1.23 7.36 86.41 0.64 1.87 16 7 C 0.18 8.57 1.05 -10.89 -0.01 8.56 16 8 O -0.56 -27.17 13.32 -148.98 -1.98 -29.15 16 9 C -0.55 -30.31 9.20 25.60 0.24 -30.08 16 10 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 11 C 0.03 1.48 5.47 84.66 0.46 1.95 16 12 N -0.93 -55.60 13.96 21.45 0.30 -55.30 16 13 Si 0.92 41.85 24.34 68.60 1.67 43.52 16 14 H -0.25 -10.93 7.06 99.48 0.70 -10.23 16 15 H -0.24 -10.32 5.28 99.48 0.52 -9.79 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 C -0.02 -0.99 5.63 86.41 0.49 -0.50 16 18 C -0.60 -8.26 5.26 71.98 0.38 -7.88 16 19 S 2.41 40.32 5.15 -56.49 -0.29 40.03 16 20 C -0.63 -3.46 10.62 113.37 1.20 -2.26 16 21 O -1.00 -27.32 18.10 -127.37 -2.31 -29.62 16 22 O -0.98 -23.13 15.46 -127.37 -1.97 -25.10 16 23 H 0.06 1.70 7.75 -2.39 -0.02 1.68 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.07 1.83 5.40 -2.38 -0.01 1.82 16 26 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.05 1.26 7.69 -2.39 -0.02 1.24 16 28 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 29 H 0.08 3.05 7.75 -2.38 -0.02 3.03 16 30 H 0.35 16.26 3.31 -74.06 -0.25 16.02 16 31 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.07 3.01 7.73 -2.39 -0.02 2.99 16 33 H 0.07 2.96 6.98 -2.38 -0.02 2.95 16 34 H 0.17 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.16 1.43 8.14 -2.40 -0.02 1.41 16 36 H 0.15 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.16 0.00 8.14 -2.39 -0.02 -0.02 16 Total: -1.00 -78.87 310.93 -4.81 -83.69 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.62 Total: 27.45 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 4.36 Total: -33.00 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -4.91 Total: -77.83 kcal Atomic # 8 Polarization: -77.61 SS G_CDS: -6.26 Total: -83.87 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.67 Total: 43.52 kcal Atomic # 16 Polarization: 40.32 SS G_CDS: -0.29 Total: 40.03 kcal Total: -78.87 -4.81 -83.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653387257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.585 kcal (2) G-P(sol) polarization free energy of solvation -78.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds