Wall clock time and date at job start Mon Mar 30 2020 01:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47603 * 2 1 4 4 C 1.53003 * 109.47265 * 120.00234 * 2 1 3 5 5 N 1.46901 * 109.46897 * 184.75220 * 4 2 1 6 6 C 1.47966 * 110.99767 * 175.18098 * 5 4 2 7 7 C 1.53926 * 86.18053 * 222.41644 * 6 5 4 8 8 O 1.42906 * 113.73426 * 269.25605 * 7 6 5 9 9 C 1.50701 * 113.73539 * 138.08043 * 7 6 5 10 10 H 1.08009 * 119.99732 * 5.91637 * 9 7 6 11 11 C 1.37874 * 120.00517 * 185.91670 * 9 7 6 12 12 N 1.31508 * 120.00179 * 184.70715 * 11 9 7 13 13 Si 1.86803 * 119.99805 * 4.70291 * 11 9 7 14 14 H 1.48495 * 109.47116 * 270.00263 * 13 11 9 15 15 H 1.48503 * 109.47024 * 30.00004 * 13 11 9 16 16 H 1.48496 * 109.47051 * 150.00170 * 13 11 9 17 17 C 1.48191 * 111.07357 * 75.75122 * 5 4 2 18 18 C 1.53004 * 109.47183 * 240.00509 * 2 1 3 19 19 S 1.81398 * 109.47344 * 64.99702 * 18 2 1 20 20 C 1.81402 * 101.92026 * 180.02562 * 19 18 2 21 21 O 1.42098 * 108.57896 * 294.49111 * 19 18 2 22 22 O 1.42096 * 108.57534 * 65.51748 * 19 18 2 23 23 H 1.08995 * 109.47019 * 183.45994 * 1 2 3 24 24 H 1.09004 * 109.47042 * 303.46134 * 1 2 3 25 25 H 1.09004 * 109.46811 * 63.45930 * 1 2 3 26 26 H 1.08999 * 109.47107 * 64.74972 * 4 2 1 27 27 H 1.09004 * 109.47008 * 304.75076 * 4 2 1 28 28 H 1.09003 * 113.75852 * 108.09893 * 6 5 4 29 29 H 1.09000 * 113.85920 * 336.75283 * 6 5 4 30 30 H 0.96702 * 113.99989 * 173.00158 * 8 7 6 31 31 H 0.97002 * 120.00259 * 354.98237 * 12 11 9 32 32 H 1.09001 * 113.75895 * 23.23523 * 17 5 4 33 33 H 1.09001 * 113.82065 * 251.80683 * 17 5 4 34 34 H 1.09000 * 109.46867 * 185.00034 * 18 2 1 35 35 H 1.09003 * 109.46462 * 304.99571 * 18 2 1 36 36 H 1.08996 * 109.47014 * 60.00214 * 20 19 18 37 37 H 1.09004 * 109.46982 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47180 * 300.00281 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5046 -0.6227 1.3079 6 6 4.0257 -1.2095 2.5623 7 6 4.9663 0.0075 2.6199 8 8 6.2227 -0.2055 1.9731 9 6 5.1084 0.5997 3.9984 10 1 4.6513 0.1105 4.8460 11 6 5.8218 1.7658 4.1777 12 7 6.0244 2.2329 5.3902 13 14 6.5005 2.6823 2.6982 14 1 7.8664 2.1863 2.3926 15 1 5.6173 2.4538 1.5264 16 1 6.5574 4.1353 2.9994 17 6 3.9307 0.7295 1.7392 18 6 2.0400 -0.7212 -1.2493 19 16 1.5601 0.2157 -2.7267 20 6 2.2539 -0.8026 -4.0579 21 8 0.1433 0.1969 -2.8343 22 8 2.2382 1.4644 -2.7109 23 1 -0.3633 -1.0258 0.0620 24 1 -0.3633 0.5666 0.8574 25 1 -0.3633 0.4592 -0.9194 26 1 1.7479 -1.7706 1.2077 27 1 1.6089 -0.2590 2.1372 28 1 4.5433 -2.1584 2.4214 29 1 3.2960 -1.2394 3.3715 30 1 6.7735 0.5870 1.9130 31 1 5.6114 1.7983 6.1527 32 1 3.1720 1.2691 2.3061 33 1 4.3726 1.3270 0.9418 34 1 3.1263 -0.7994 -1.2056 35 1 1.6054 -1.7197 -1.2952 36 1 1.8126 -1.7986 -4.0211 37 1 2.0324 -0.3421 -5.0207 38 1 3.3339 -0.8789 -3.9319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653387258.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:01 Heat of formation + Delta-G solvation = -77.741160 kcal Electronic energy + Delta-G solvation = -20666.365579 eV Core-core repulsion = 17444.986984 eV Total energy + Delta-G solvation = -3221.378595 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.51597 -37.08456 -36.42812 -35.93388 -34.10459 -32.50515 -29.94533 -28.65241 -27.53696 -25.64600 -25.35805 -22.26336 -20.15289 -19.11330 -18.93046 -17.92039 -16.92940 -16.36536 -16.12400 -15.74544 -15.24574 -15.01472 -14.35722 -13.97833 -13.55280 -13.48280 -13.40016 -13.15266 -12.83890 -12.72278 -12.31239 -12.12387 -12.05365 -11.78164 -11.64947 -11.48825 -11.28457 -11.12814 -11.01029 -10.82667 -10.47195 -10.21402 -10.02563 -9.59588 -9.31040 -8.85139 -8.51402 -8.08730 -6.60963 -4.37474 -0.11098 2.64645 3.19490 3.28275 3.41095 3.50355 3.89713 4.27214 4.41056 4.51270 4.57039 4.65702 4.83941 4.91150 4.99107 5.27717 5.40025 5.42018 5.50858 5.64214 5.68219 5.75411 5.85223 5.91075 6.01965 6.11101 6.21997 6.28306 6.42068 6.59099 6.89884 6.90751 7.65069 7.69345 8.14046 8.61159 8.72585 9.37796 10.73388 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026117 B = 0.005042 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.841477 B = 5552.182139 C = 5880.492077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.071 4.071 3 H 0.086 0.914 4 C 0.031 3.969 5 N -0.480 5.480 6 C 0.024 3.976 7 C 0.203 3.797 8 O -0.556 6.556 9 C -0.612 4.612 10 H 0.065 0.935 11 C 0.034 3.966 12 N -0.898 5.898 13 Si 1.028 2.972 14 H -0.277 1.277 15 H -0.260 1.260 16 H -0.282 1.282 17 C -0.037 4.037 18 C -0.589 4.589 19 S 2.411 3.589 20 C -0.659 4.659 21 O -0.944 6.944 22 O -0.939 6.939 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.352 0.648 31 H 0.271 0.729 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.973 -6.579 -15.615 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.091 4.091 3 H 0.104 0.896 4 C -0.100 4.100 5 N -0.203 5.203 6 C -0.104 4.104 7 C 0.162 3.838 8 O -0.364 6.364 9 C -0.650 4.650 10 H 0.083 0.917 11 C -0.173 4.173 12 N -0.531 5.531 13 Si 0.856 3.144 14 H -0.204 1.204 15 H -0.185 1.185 16 H -0.208 1.208 17 C -0.166 4.166 18 C -0.719 4.719 19 S 2.594 3.406 20 C -0.808 4.808 21 O -0.941 6.941 22 O -0.936 6.936 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.202 0.798 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.164 0.836 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.576 -5.355 -16.828 19.632 hybrid contribution -0.659 -1.331 1.407 2.046 sum -9.235 -6.686 -15.421 19.178 Atomic orbital electron populations 1.22355 0.94056 1.03231 1.04277 1.20801 0.95604 0.99938 0.92772 0.89597 1.22619 0.91585 1.00073 0.95681 1.68534 1.08523 1.09948 1.33289 1.23907 0.96813 0.99337 0.90353 1.20404 0.80971 0.91734 0.90708 1.86414 1.30577 1.37728 1.81704 1.22402 1.39100 1.10694 0.92816 0.91715 1.25813 0.94222 0.95207 1.02052 1.70784 1.40138 1.43401 0.98768 0.84379 0.77149 0.77396 0.75467 1.20427 1.18501 1.20824 1.25238 1.00415 0.91721 0.99190 1.30228 1.13412 1.13131 1.15132 1.08089 0.76058 0.77595 0.78839 1.30281 1.14155 1.16586 1.19756 1.93548 1.27707 1.87159 1.85674 1.93612 1.76100 1.37999 1.85913 0.91868 0.91621 0.89866 0.91061 0.93585 0.90374 0.91244 0.79832 0.91889 0.91015 0.90103 0.83550 0.85330 0.85505 0.85605 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 8.94 37.16 0.33 -1.78 16 2 C -0.07 -0.94 2.45 -90.62 -0.22 -1.16 16 3 H 0.09 1.25 7.63 -51.93 -0.40 0.86 16 4 C 0.03 0.46 4.14 -3.82 -0.02 0.44 16 5 N -0.48 -8.82 5.59 -238.04 -1.33 -10.15 16 6 C 0.02 0.50 7.37 -2.76 -0.02 0.48 16 7 C 0.20 4.78 1.06 -90.84 -0.10 4.68 16 8 O -0.56 -13.33 13.42 -35.23 -0.47 -13.80 16 9 C -0.61 -16.67 9.04 -34.44 -0.31 -16.98 16 10 H 0.06 1.88 8.04 -52.48 -0.42 1.46 16 11 C 0.03 0.93 5.47 -17.82 -0.10 0.84 16 12 N -0.90 -26.67 13.70 55.43 0.76 -25.91 16 13 Si 1.03 23.51 24.82 -169.99 -4.22 19.30 16 14 H -0.28 -5.97 6.95 56.52 0.39 -5.58 16 15 H -0.26 -5.42 4.69 56.52 0.26 -5.15 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C -0.04 -0.77 5.37 -2.63 -0.01 -0.78 16 18 C -0.59 -6.08 5.21 37.16 0.19 -5.89 16 19 S 2.41 24.57 5.16 -107.50 -0.55 24.02 16 20 C -0.66 -4.17 10.62 101.05 1.07 -3.10 16 21 O -0.94 -11.82 15.40 -57.83 -0.89 -12.71 16 22 O -0.94 -13.75 18.10 -57.83 -1.05 -14.80 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 1.01 5.19 -51.93 -0.27 0.74 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.71 7.69 -51.93 -0.40 0.31 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.07 1.37 7.83 -51.93 -0.41 0.96 16 30 H 0.35 7.96 4.45 45.56 0.20 8.16 16 31 H 0.27 8.00 8.72 -40.82 -0.36 7.65 16 32 H 0.07 1.51 7.66 -51.93 -0.40 1.11 16 33 H 0.08 1.69 6.41 -51.93 -0.33 1.36 16 34 H 0.15 1.58 7.61 -51.92 -0.40 1.19 16 35 H 0.13 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.13 0.69 8.14 -51.92 -0.42 0.26 16 LS Contribution 310.96 15.07 4.69 4.69 Total: -1.00 -34.61 310.96 -7.74 -42.36 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.50 Total: 10.27 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 0.82 Total: -23.25 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.57 Total: -36.06 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -2.41 Total: -41.31 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.22 Total: 19.30 kcal Atomic # 16 Polarization: 24.57 SS G_CDS: -0.55 Total: 24.02 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.61 -7.74 -42.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653387258.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.385 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds