Wall clock time and date at job start Mon Mar 30 2020 01:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47603 * 2 1 4 4 C 1.53003 * 109.47265 * 120.00234 * 2 1 3 5 5 N 1.46901 * 109.46897 * 184.75220 * 4 2 1 6 6 C 1.47966 * 110.99767 * 175.18098 * 5 4 2 7 7 C 1.53926 * 86.18053 * 222.41644 * 6 5 4 8 8 O 1.42906 * 113.73426 * 269.25605 * 7 6 5 9 9 C 1.50701 * 113.73539 * 138.08043 * 7 6 5 10 10 H 1.08009 * 119.99732 * 5.91637 * 9 7 6 11 11 C 1.37874 * 120.00517 * 185.91670 * 9 7 6 12 12 N 1.31508 * 120.00179 * 184.70715 * 11 9 7 13 13 Si 1.86803 * 119.99805 * 4.70291 * 11 9 7 14 14 H 1.48495 * 109.47116 * 270.00263 * 13 11 9 15 15 H 1.48503 * 109.47024 * 30.00004 * 13 11 9 16 16 H 1.48496 * 109.47051 * 150.00170 * 13 11 9 17 17 C 1.48191 * 111.07357 * 75.75122 * 5 4 2 18 18 C 1.53004 * 109.47183 * 240.00509 * 2 1 3 19 19 S 1.81398 * 109.47344 * 64.99702 * 18 2 1 20 20 C 1.81402 * 101.92026 * 180.02562 * 19 18 2 21 21 O 1.42098 * 108.57896 * 294.49111 * 19 18 2 22 22 O 1.42096 * 108.57534 * 65.51748 * 19 18 2 23 23 H 1.08995 * 109.47019 * 183.45994 * 1 2 3 24 24 H 1.09004 * 109.47042 * 303.46134 * 1 2 3 25 25 H 1.09004 * 109.46811 * 63.45930 * 1 2 3 26 26 H 1.08999 * 109.47107 * 64.74972 * 4 2 1 27 27 H 1.09004 * 109.47008 * 304.75076 * 4 2 1 28 28 H 1.09003 * 113.75852 * 108.09893 * 6 5 4 29 29 H 1.09000 * 113.85920 * 336.75283 * 6 5 4 30 30 H 0.96702 * 113.99989 * 173.00158 * 8 7 6 31 31 H 0.97002 * 120.00259 * 354.98237 * 12 11 9 32 32 H 1.09001 * 113.75895 * 23.23523 * 17 5 4 33 33 H 1.09001 * 113.82065 * 251.80683 * 17 5 4 34 34 H 1.09000 * 109.46867 * 185.00034 * 18 2 1 35 35 H 1.09003 * 109.46462 * 304.99571 * 18 2 1 36 36 H 1.08996 * 109.47014 * 60.00214 * 20 19 18 37 37 H 1.09004 * 109.46982 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47180 * 300.00281 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5046 -0.6227 1.3079 6 6 4.0257 -1.2095 2.5623 7 6 4.9663 0.0075 2.6199 8 8 6.2227 -0.2055 1.9731 9 6 5.1084 0.5997 3.9984 10 1 4.6513 0.1105 4.8460 11 6 5.8218 1.7658 4.1777 12 7 6.0244 2.2329 5.3902 13 14 6.5005 2.6823 2.6982 14 1 7.8664 2.1863 2.3926 15 1 5.6173 2.4538 1.5264 16 1 6.5574 4.1353 2.9994 17 6 3.9307 0.7295 1.7392 18 6 2.0400 -0.7212 -1.2493 19 16 1.5601 0.2157 -2.7267 20 6 2.2539 -0.8026 -4.0579 21 8 0.1433 0.1969 -2.8343 22 8 2.2382 1.4644 -2.7109 23 1 -0.3633 -1.0258 0.0620 24 1 -0.3633 0.5666 0.8574 25 1 -0.3633 0.4592 -0.9194 26 1 1.7479 -1.7706 1.2077 27 1 1.6089 -0.2590 2.1372 28 1 4.5433 -2.1584 2.4214 29 1 3.2960 -1.2394 3.3715 30 1 6.7735 0.5870 1.9130 31 1 5.6114 1.7983 6.1527 32 1 3.1720 1.2691 2.3061 33 1 4.3726 1.3270 0.9418 34 1 3.1263 -0.7994 -1.2056 35 1 1.6054 -1.7197 -1.2952 36 1 1.8126 -1.7986 -4.0211 37 1 2.0324 -0.3421 -5.0207 38 1 3.3339 -0.8789 -3.9319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653387258.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:01 Heat of formation + Delta-G solvation = -108.929146 kcal Electronic energy + Delta-G solvation = -20667.717992 eV Core-core repulsion = 17444.986984 eV Total energy + Delta-G solvation = -3222.731007 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.12608 -37.98009 -37.63471 -36.94572 -35.63606 -34.64330 -30.50667 -30.19502 -28.36680 -27.34662 -27.07292 -23.81287 -21.29348 -20.86173 -19.96368 -19.75121 -17.84767 -17.59295 -17.17615 -17.08568 -16.71288 -16.48805 -15.52913 -15.37110 -15.11053 -14.68505 -14.25824 -14.15229 -13.93875 -13.89675 -13.71432 -13.51504 -13.22681 -12.96760 -12.85638 -12.84383 -12.36610 -12.34638 -12.25866 -11.97894 -11.93956 -11.74664 -11.50859 -11.11004 -10.99226 -10.90035 -10.35732 -9.75155 -8.80814 -6.60464 -0.85070 1.35539 1.46676 1.58955 1.94380 2.36150 2.76017 2.86440 2.96855 3.18109 3.53457 3.62030 3.82663 3.90145 4.01596 4.13419 4.15704 4.27188 4.36041 4.49221 4.56651 4.62947 4.74646 4.78064 4.81834 4.89353 4.98712 5.02576 5.17027 5.18719 5.33362 5.42525 5.64309 5.85949 6.16200 6.36446 6.85126 7.24266 8.50703 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026117 B = 0.005042 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.841477 B = 5552.182139 C = 5880.492077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.077 4.077 3 H 0.063 0.937 4 C 0.029 3.971 5 N -0.465 5.465 6 C 0.029 3.971 7 C 0.184 3.816 8 O -0.559 6.559 9 C -0.618 4.618 10 H 0.029 0.971 11 C -0.015 4.015 12 N -0.931 5.931 13 Si 1.061 2.939 14 H -0.252 1.252 15 H -0.230 1.230 16 H -0.287 1.287 17 C -0.029 4.029 18 C -0.589 4.589 19 S 2.412 3.588 20 C -0.637 4.637 21 O -0.973 6.973 22 O -0.994 6.994 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.037 0.963 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.357 0.643 31 H 0.256 0.744 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.145 0.855 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.138 0.862 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.258 -8.302 -18.627 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.097 4.097 3 H 0.082 0.918 4 C -0.101 4.101 5 N -0.188 5.188 6 C -0.100 4.100 7 C 0.143 3.857 8 O -0.368 6.368 9 C -0.656 4.656 10 H 0.047 0.953 11 C -0.214 4.214 12 N -0.566 5.566 13 Si 0.881 3.119 14 H -0.177 1.177 15 H -0.154 1.154 16 H -0.213 1.213 17 C -0.158 4.158 18 C -0.719 4.719 19 S 2.601 3.399 20 C -0.790 4.790 21 O -0.970 6.970 22 O -0.991 6.991 23 H 0.102 0.898 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.115 0.885 27 H 0.055 0.945 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.208 0.792 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.163 0.837 35 H 0.182 0.818 36 H 0.176 0.824 37 H 0.156 0.844 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.891 -7.081 -19.811 22.840 hybrid contribution -0.613 -0.916 2.372 2.616 sum -9.504 -7.997 -17.439 21.410 Atomic orbital electron populations 1.22343 0.92952 1.04484 1.03971 1.20782 0.96587 0.98926 0.93360 0.91814 1.22731 0.89048 1.01922 0.96409 1.68477 1.11096 1.07637 1.31568 1.23854 0.96136 0.98552 0.91441 1.20548 0.81726 0.94177 0.89202 1.86392 1.30823 1.38278 1.81320 1.22614 1.38328 1.10567 0.94055 0.95270 1.27240 0.94393 0.96167 1.03617 1.70914 1.42036 1.44314 0.99358 0.84025 0.78535 0.75945 0.73364 1.17720 1.15401 1.21333 1.25019 0.99338 0.92937 0.98519 1.30214 1.13433 1.14593 1.13672 1.07698 0.75206 0.77334 0.79691 1.30074 1.15013 1.16743 1.17145 1.93507 1.29535 1.87709 1.86282 1.93545 1.76757 1.41826 1.86976 0.89833 0.91841 0.90348 0.88451 0.94461 0.89406 0.91233 0.79246 0.93498 0.91759 0.89648 0.83651 0.81764 0.82435 0.84400 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.86 8.94 71.98 0.64 -3.21 16 2 C -0.08 -1.87 2.45 -10.79 -0.03 -1.90 16 3 H 0.06 1.83 7.63 -2.39 -0.02 1.81 16 4 C 0.03 0.78 4.14 86.30 0.36 1.14 16 5 N -0.47 -16.07 5.59 -910.22 -5.08 -21.15 16 6 C 0.03 1.13 7.37 86.41 0.64 1.77 16 7 C 0.18 8.54 1.06 -10.90 -0.01 8.53 16 8 O -0.56 -25.79 13.42 -148.98 -2.00 -27.79 16 9 C -0.62 -34.33 9.04 25.60 0.23 -34.10 16 10 H 0.03 1.77 8.04 -2.91 -0.02 1.75 16 11 C -0.01 -0.83 5.47 84.65 0.46 -0.37 16 12 N -0.93 -57.11 13.70 21.45 0.29 -56.82 16 13 Si 1.06 46.73 24.82 68.60 1.70 48.43 16 14 H -0.25 -10.06 6.95 99.48 0.69 -9.37 16 15 H -0.23 -8.97 4.69 99.48 0.47 -8.50 16 16 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 17 C -0.03 -1.18 5.37 86.36 0.46 -0.71 16 18 C -0.59 -10.33 5.21 71.98 0.37 -9.95 16 19 S 2.41 44.17 5.16 -56.49 -0.29 43.87 16 20 C -0.64 -5.24 10.62 113.37 1.20 -4.03 16 21 O -0.97 -22.79 15.40 -127.37 -1.96 -24.75 16 22 O -0.99 -28.56 18.10 -127.37 -2.31 -30.86 16 23 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.08 1.80 5.19 -2.39 -0.01 1.79 16 26 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.04 1.10 7.69 -2.39 -0.02 1.08 16 28 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 29 H 0.07 2.70 7.83 -2.39 -0.02 2.68 16 30 H 0.36 15.35 4.45 -74.06 -0.33 15.03 16 31 H 0.26 15.90 8.72 -92.71 -0.81 15.09 16 32 H 0.06 2.69 7.66 -2.39 -0.02 2.67 16 33 H 0.09 3.39 6.41 -2.39 -0.02 3.38 16 34 H 0.15 2.65 7.61 -2.39 -0.02 2.63 16 35 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.16 0.42 8.14 -2.39 -0.02 0.41 16 37 H 0.14 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -77.17 310.96 -4.88 -82.05 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.43 Total: 29.86 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 4.34 Total: -42.84 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -4.79 Total: -77.97 kcal Atomic # 8 Polarization: -77.14 SS G_CDS: -6.27 Total: -83.40 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.70 Total: 48.43 kcal Atomic # 16 Polarization: 44.17 SS G_CDS: -0.29 Total: 43.87 kcal Total: -77.17 -4.88 -82.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653387258.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.883 kcal (2) G-P(sol) polarization free energy of solvation -77.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds