Wall clock time and date at job start Mon Mar 30 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 N 1.46496 * 109.47317 * 239.99793 * 2 1 3 5 5 C 1.34774 * 120.00083 * 84.99639 * 4 2 1 6 6 N 1.34783 * 119.99962 * 180.27238 * 5 4 2 7 7 O 1.21588 * 120.00133 * 0.02562 * 5 4 2 8 8 C 1.50699 * 109.46812 * 119.99524 * 2 1 3 9 9 O 1.21282 * 119.99985 * 120.00200 * 8 2 1 10 10 N 1.34779 * 120.00284 * 299.99833 * 8 2 1 11 11 C 1.39239 * 119.99649 * 175.70602 * 10 8 2 12 12 C 1.39485 * 119.82860 * 215.02123 * 11 10 8 13 13 C 1.36377 * 120.16608 * 179.76991 * 12 11 10 14 14 C 1.40872 * 119.82392 * 0.50656 * 13 12 11 15 15 C 1.41160 * 120.15982 * 179.72312 * 14 13 12 16 16 H 1.07995 * 120.00103 * 214.79890 * 15 14 13 17 17 C 1.39907 * 120.00015 * 34.80101 * 15 14 13 18 18 N 1.30870 * 119.99887 * 355.57244 * 17 15 14 19 19 Si 1.86800 * 120.00139 * 175.56809 * 17 15 14 20 20 H 1.48502 * 109.46700 * 90.00028 * 19 17 15 21 21 H 1.48494 * 109.47445 * 210.00042 * 19 17 15 22 22 H 1.48500 * 109.47137 * 330.00276 * 19 17 15 23 23 C 1.40865 * 119.67822 * 359.74466 * 14 13 12 24 24 C 1.36376 * 119.82240 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.46862 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47171 * 300.00150 * 1 2 3 27 27 H 1.08997 * 109.46926 * 60.00656 * 1 2 3 28 28 H 0.96998 * 119.99758 * 265.00086 * 4 2 1 29 29 H 0.96994 * 119.99632 * 179.72307 * 6 5 4 30 30 H 0.96998 * 119.99825 * 359.73210 * 6 5 4 31 31 H 0.96995 * 120.00014 * 355.71624 * 10 8 2 32 32 H 1.07998 * 119.91839 * 0.02562 * 12 11 10 33 33 H 1.07993 * 120.08866 * 180.25784 * 13 12 11 34 34 H 0.97002 * 119.99784 * 180.02562 * 18 17 15 35 35 H 1.08003 * 120.08745 * 179.97438 * 23 14 13 36 36 H 1.07999 * 119.91083 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 7 2.5912 -0.6551 -3.4589 7 8 1.8583 1.1615 -2.4117 8 6 2.0323 -0.7103 1.2305 9 8 2.7296 -1.6964 1.1194 10 7 1.7067 -0.2498 2.4546 11 6 2.0953 -0.9558 3.5901 12 6 1.2602 -0.9877 4.7069 13 6 1.6319 -1.6810 5.8209 14 6 2.8676 -2.3570 5.8456 15 6 3.2620 -3.0718 6.9972 16 1 4.3035 -3.1068 7.2807 17 6 2.3037 -3.7351 7.7712 18 7 1.0333 -3.6217 7.4781 19 14 2.8375 -4.7826 9.2228 20 1 2.8848 -3.9439 10.4474 21 1 1.8669 -5.8894 9.4181 22 1 4.1850 -5.3470 8.9570 23 6 3.7079 -2.3157 4.7158 24 6 3.3204 -1.6222 3.6074 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 2.2491 -1.6318 -1.1525 29 1 2.6800 -0.1722 -4.2954 30 1 2.8219 -1.5963 -3.4152 31 1 1.2016 0.5734 2.5446 32 1 0.3151 -0.4656 4.6878 33 1 0.9825 -1.7083 6.6833 34 1 0.3688 -4.0813 8.0150 35 1 4.6569 -2.8312 4.7278 36 1 3.9638 -1.5892 2.7405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025401939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:06 Heat of formation + Delta-G solvation = -48.443683 kcal Electronic energy + Delta-G solvation = -20644.835012 eV Core-core repulsion = 17321.575651 eV Total energy + Delta-G solvation = -3323.259361 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45350 -39.37815 -37.38949 -34.98657 -34.52415 -33.85150 -32.97937 -30.42037 -29.58894 -28.72979 -25.46356 -24.12826 -21.87879 -21.15641 -20.62941 -19.78081 -18.63803 -17.77144 -17.34914 -16.54685 -16.08810 -15.56448 -15.24370 -14.82736 -14.77483 -14.36415 -13.97414 -13.57355 -13.11725 -12.76991 -12.68453 -12.39759 -12.10992 -11.77113 -11.65439 -11.40983 -11.18227 -11.02953 -10.75754 -10.45768 -10.07380 -9.87564 -9.55318 -9.49962 -9.31080 -9.09641 -8.91962 -7.59128 -6.92102 -6.65492 -4.38232 2.45190 2.64482 2.94955 3.04957 3.07398 3.08133 3.11699 3.27413 3.66199 3.95422 4.34286 4.65832 4.84870 5.00373 5.10942 5.49537 5.60851 5.68427 6.03828 6.15272 6.28735 6.39439 6.54319 6.68521 6.74817 6.86365 7.02574 7.15286 7.25076 7.59575 7.67633 7.79445 7.82836 8.02042 8.18583 8.27106 8.47738 8.55159 8.64303 8.89080 8.95219 10.25446 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.045926 B = 0.003271 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.526007 B = 8558.915543 C = 8829.937442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.145 3.855 3 H 0.112 0.888 4 N -0.725 5.725 5 C 0.710 3.290 6 N -0.867 5.867 7 O -0.599 6.599 8 C 0.496 3.504 9 O -0.530 6.530 10 N -0.642 5.642 11 C 0.000 4.000 12 C -0.118 4.118 13 C -0.142 4.142 14 C 0.101 3.899 15 C -0.460 4.460 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.811 5.811 19 Si 0.916 3.084 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.206 4.206 24 C -0.084 4.084 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.407 0.593 29 H 0.414 0.586 30 H 0.398 0.602 31 H 0.398 0.602 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.278 0.722 35 H 0.096 0.904 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 4.182 -12.868 13.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.130 0.870 4 N -0.383 5.383 5 C 0.408 3.592 6 N -0.435 5.435 7 O -0.478 6.478 8 C 0.282 3.718 9 O -0.407 6.407 10 N -0.285 5.285 11 C -0.092 4.092 12 C -0.138 4.138 13 C -0.162 4.162 14 C 0.099 3.901 15 C -0.491 4.491 16 H 0.094 0.906 17 C -0.146 4.146 18 N -0.438 5.438 19 Si 0.741 3.259 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.226 4.226 24 C -0.104 4.104 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.244 0.756 29 H 0.246 0.754 30 H 0.226 0.774 31 H 0.232 0.768 32 H 0.110 0.890 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.606 4.375 -12.737 13.563 hybrid contribution 0.098 -0.929 0.331 0.991 sum -1.508 3.446 -12.407 12.964 Atomic orbital electron populations 1.22142 0.93052 1.03175 1.03384 1.20579 0.95336 0.97644 0.82942 0.87047 1.44788 1.71036 1.14532 1.07937 1.15867 0.77926 0.84830 0.80624 1.42934 1.73762 1.15020 1.11787 1.90956 1.57646 1.14348 1.84831 1.20480 0.81598 0.85070 0.84699 1.90674 1.37326 1.26513 1.86170 1.42882 1.55256 1.25845 1.04511 1.17254 0.96738 1.07764 0.87479 1.20317 0.97107 1.02119 0.94277 1.21201 0.99356 0.97748 0.97862 1.17735 0.91574 0.89056 0.91773 1.19513 0.94892 1.27476 1.07225 0.90582 1.25886 0.94504 0.96429 0.97746 1.69757 1.01239 1.36366 1.36435 0.86188 0.79519 0.79477 0.80757 1.19499 1.20292 1.18715 1.20805 1.01804 1.06256 0.93760 1.20384 0.94091 0.98249 0.97676 0.91755 0.90851 0.90954 0.75648 0.75412 0.77386 0.76792 0.88969 0.84985 0.91104 0.88587 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.39 37.16 0.35 -1.38 16 2 C 0.14 1.85 2.98 -69.08 -0.21 1.64 16 3 H 0.11 1.42 7.58 -51.93 -0.39 1.03 16 4 N -0.73 -8.73 4.96 -59.81 -0.30 -9.03 16 5 C 0.71 8.71 8.80 -86.91 -0.77 7.94 16 6 N -0.87 -6.72 8.88 27.64 0.25 -6.48 16 7 O -0.60 -9.55 16.84 5.29 0.09 -9.46 16 8 C 0.50 8.08 7.05 -10.99 -0.08 8.01 16 9 O -0.53 -10.44 13.26 5.56 0.07 -10.37 16 10 N -0.64 -10.65 5.17 -9.74 -0.05 -10.70 16 11 C 0.00 0.00 6.30 -83.57 -0.53 -0.53 16 12 C -0.12 -2.61 9.90 -39.79 -0.39 -3.00 16 13 C -0.14 -3.56 8.62 -39.26 -0.34 -3.90 16 14 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 15 C -0.46 -12.11 9.03 -37.85 -0.34 -12.45 16 16 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 17 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 18 N -0.81 -20.76 10.60 55.55 0.59 -20.17 16 19 Si 0.92 18.75 29.56 -169.99 -5.03 13.72 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 C -0.21 -5.12 9.74 -39.26 -0.38 -5.51 16 24 C -0.08 -1.96 8.61 -39.79 -0.34 -2.30 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.41 4.64 7.80 -40.82 -0.32 4.32 16 29 H 0.41 2.62 8.93 -40.82 -0.36 2.25 16 30 H 0.40 2.08 8.84 -40.82 -0.36 1.72 16 31 H 0.40 5.15 8.37 -40.82 -0.34 4.81 16 32 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.13 3.43 6.13 -52.49 -0.32 3.11 16 34 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 35 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 36 H 0.11 2.45 6.22 -52.49 -0.33 2.12 16 LS Contribution 312.05 15.07 4.70 4.70 Total: -1.00 -32.06 312.05 -7.45 -39.50 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -4.06 Total: 16.05 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -3.71 Total: -7.77 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.49 Total: -46.37 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.16 Total: -19.82 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.06 -7.45 -39.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025401939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.940 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds