Wall clock time and date at job start Mon Mar 30 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 N 1.46496 * 109.47317 * 239.99793 * 2 1 3 5 5 C 1.34774 * 120.00083 * 84.99639 * 4 2 1 6 6 N 1.34783 * 119.99962 * 180.27238 * 5 4 2 7 7 O 1.21588 * 120.00133 * 0.02562 * 5 4 2 8 8 C 1.50699 * 109.46812 * 119.99524 * 2 1 3 9 9 O 1.21282 * 119.99985 * 120.00200 * 8 2 1 10 10 N 1.34779 * 120.00284 * 299.99833 * 8 2 1 11 11 C 1.39239 * 119.99649 * 175.70602 * 10 8 2 12 12 C 1.39485 * 119.82860 * 215.02123 * 11 10 8 13 13 C 1.36377 * 120.16608 * 179.76991 * 12 11 10 14 14 C 1.40872 * 119.82392 * 0.50656 * 13 12 11 15 15 C 1.41160 * 120.15982 * 179.72312 * 14 13 12 16 16 H 1.07995 * 120.00103 * 214.79890 * 15 14 13 17 17 C 1.39907 * 120.00015 * 34.80101 * 15 14 13 18 18 N 1.30870 * 119.99887 * 355.57244 * 17 15 14 19 19 Si 1.86800 * 120.00139 * 175.56809 * 17 15 14 20 20 H 1.48502 * 109.46700 * 90.00028 * 19 17 15 21 21 H 1.48494 * 109.47445 * 210.00042 * 19 17 15 22 22 H 1.48500 * 109.47137 * 330.00276 * 19 17 15 23 23 C 1.40865 * 119.67822 * 359.74466 * 14 13 12 24 24 C 1.36376 * 119.82240 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.46862 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47171 * 300.00150 * 1 2 3 27 27 H 1.08997 * 109.46926 * 60.00656 * 1 2 3 28 28 H 0.96998 * 119.99758 * 265.00086 * 4 2 1 29 29 H 0.96994 * 119.99632 * 179.72307 * 6 5 4 30 30 H 0.96998 * 119.99825 * 359.73210 * 6 5 4 31 31 H 0.96995 * 120.00014 * 355.71624 * 10 8 2 32 32 H 1.07998 * 119.91839 * 0.02562 * 12 11 10 33 33 H 1.07993 * 120.08866 * 180.25784 * 13 12 11 34 34 H 0.97002 * 119.99784 * 180.02562 * 18 17 15 35 35 H 1.08003 * 120.08745 * 179.97438 * 23 14 13 36 36 H 1.07999 * 119.91083 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 7 2.5912 -0.6551 -3.4589 7 8 1.8583 1.1615 -2.4117 8 6 2.0323 -0.7103 1.2305 9 8 2.7296 -1.6964 1.1194 10 7 1.7067 -0.2498 2.4546 11 6 2.0953 -0.9558 3.5901 12 6 1.2602 -0.9877 4.7069 13 6 1.6319 -1.6810 5.8209 14 6 2.8676 -2.3570 5.8456 15 6 3.2620 -3.0718 6.9972 16 1 4.3035 -3.1068 7.2807 17 6 2.3037 -3.7351 7.7712 18 7 1.0333 -3.6217 7.4781 19 14 2.8375 -4.7826 9.2228 20 1 2.8848 -3.9439 10.4474 21 1 1.8669 -5.8894 9.4181 22 1 4.1850 -5.3470 8.9570 23 6 3.7079 -2.3157 4.7158 24 6 3.3204 -1.6222 3.6074 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 2.2491 -1.6318 -1.1525 29 1 2.6800 -0.1722 -4.2954 30 1 2.8219 -1.5963 -3.4152 31 1 1.2016 0.5734 2.5446 32 1 0.3151 -0.4656 4.6878 33 1 0.9825 -1.7083 6.6833 34 1 0.3688 -4.0813 8.0150 35 1 4.6569 -2.8312 4.7278 36 1 3.9638 -1.5892 2.7405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025401939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:06 Heat of formation + Delta-G solvation = -73.030956 kcal Electronic energy + Delta-G solvation = -20645.901196 eV Core-core repulsion = 17321.575651 eV Total energy + Delta-G solvation = -3324.325545 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.68646 -40.60135 -39.09742 -36.31011 -35.95677 -34.85937 -34.56740 -31.66460 -31.35493 -30.36419 -27.06994 -25.42304 -23.45050 -22.75320 -21.93434 -21.15033 -19.71088 -19.22282 -18.83402 -17.87418 -17.39952 -17.00747 -16.64032 -16.07182 -15.84024 -15.73570 -15.48182 -14.92807 -14.62296 -14.44983 -14.03765 -13.80655 -13.56008 -13.30257 -13.21852 -12.85361 -12.76482 -12.65246 -12.45719 -11.77583 -11.51540 -11.38878 -11.21058 -10.84865 -10.73138 -10.60374 -10.11878 -9.45797 -8.74081 -8.50142 -6.32901 0.77167 1.14785 1.40517 1.42852 1.53487 1.61935 1.75984 2.11741 2.24532 2.40754 2.80841 3.51125 3.65002 3.73191 4.03745 4.12168 4.41278 4.52607 4.66739 4.79061 4.94025 5.12888 5.14568 5.18926 5.30305 5.36184 5.42778 5.70406 5.81632 5.90309 6.01794 6.03308 6.13650 6.39473 6.62536 6.69480 6.97397 6.99260 7.00153 7.27863 7.60563 8.42290 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.045926 B = 0.003271 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.526007 B = 8558.915543 C = 8829.937442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.118 0.882 4 N -0.725 5.725 5 C 0.706 3.294 6 N -0.846 5.846 7 O -0.637 6.637 8 C 0.500 3.500 9 O -0.563 6.563 10 N -0.635 5.635 11 C 0.020 3.980 12 C -0.115 4.115 13 C -0.160 4.160 14 C 0.069 3.931 15 C -0.498 4.498 16 H 0.071 0.929 17 C 0.029 3.971 18 N -0.840 5.840 19 Si 0.987 3.013 20 H -0.260 1.260 21 H -0.269 1.269 22 H -0.263 1.263 23 C -0.221 4.221 24 C -0.095 4.095 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.411 0.589 29 H 0.423 0.577 30 H 0.413 0.587 31 H 0.419 0.581 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.285 0.715 35 H 0.095 0.905 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 4.539 -13.852 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.045 3.955 3 H 0.135 0.865 4 N -0.383 5.383 5 C 0.404 3.596 6 N -0.415 5.415 7 O -0.519 6.519 8 C 0.287 3.713 9 O -0.442 6.442 10 N -0.280 5.280 11 C -0.074 4.074 12 C -0.135 4.135 13 C -0.180 4.180 14 C 0.066 3.934 15 C -0.529 4.529 16 H 0.090 0.910 17 C -0.183 4.183 18 N -0.467 5.467 19 Si 0.808 3.192 20 H -0.185 1.185 21 H -0.194 1.194 22 H -0.187 1.187 23 C -0.241 4.241 24 C -0.115 4.115 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.248 0.752 29 H 0.257 0.743 30 H 0.243 0.757 31 H 0.257 0.743 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.389 4.740 -13.773 14.760 hybrid contribution 0.342 -0.972 0.442 1.121 sum -2.047 3.767 -13.331 14.003 Atomic orbital electron populations 1.22124 0.91197 1.03332 1.04477 1.20517 0.96527 0.97135 0.81312 0.86466 1.44769 1.71102 1.14622 1.07786 1.16017 0.77896 0.84416 0.81262 1.42756 1.72111 1.15735 1.10928 1.90932 1.59437 1.16025 1.85471 1.21098 0.80337 0.84495 0.85322 1.90668 1.38673 1.28138 1.86703 1.42774 1.55452 1.26397 1.03365 1.17286 0.95459 1.06056 0.88588 1.20571 0.98314 1.01283 0.93337 1.21185 0.99125 0.98941 0.98740 1.18037 0.92684 0.90152 0.92497 1.19729 0.95207 1.29352 1.08606 0.91032 1.26708 0.94338 0.97135 1.00156 1.69817 1.02120 1.37188 1.37616 0.85123 0.78979 0.77803 0.77291 1.18486 1.19407 1.18746 1.20923 1.01922 1.07040 0.94235 1.20506 0.95137 0.98724 0.97168 0.92026 0.88976 0.90694 0.75234 0.74327 0.75675 0.74264 0.85492 0.86341 0.90465 0.88691 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.39 71.98 0.68 -2.22 16 2 C 0.15 3.59 2.98 44.25 0.13 3.72 16 3 H 0.12 2.69 7.58 -2.39 -0.02 2.67 16 4 N -0.73 -16.04 4.96 -461.41 -2.29 -18.32 16 5 C 0.71 15.95 8.80 179.05 1.58 17.53 16 6 N -0.85 -11.24 8.88 -184.74 -1.64 -12.88 16 7 O -0.64 -19.24 16.84 -3.99 -0.07 -19.30 16 8 C 0.50 15.29 7.05 87.66 0.62 15.91 16 9 O -0.56 -21.50 13.26 -3.04 -0.04 -21.54 16 10 N -0.63 -19.51 5.17 -303.11 -1.57 -21.08 16 11 C 0.02 0.81 6.30 38.56 0.24 1.05 16 12 C -0.12 -4.94 9.90 22.14 0.22 -4.72 16 13 C -0.16 -8.14 8.62 22.48 0.19 -7.95 16 14 C 0.07 3.72 5.55 -21.27 -0.12 3.61 16 15 C -0.50 -27.10 9.03 23.39 0.21 -26.89 16 16 H 0.07 3.78 7.85 -2.91 -0.02 3.75 16 17 C 0.03 1.45 5.42 85.24 0.46 1.91 16 18 N -0.84 -43.66 10.60 21.82 0.23 -43.43 16 19 Si 0.99 38.72 29.56 68.60 2.03 40.75 16 20 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 21 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 C -0.22 -11.29 9.74 22.48 0.22 -11.07 16 24 C -0.10 -4.44 8.61 22.13 0.19 -4.25 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.09 1.39 7.67 -2.39 -0.02 1.37 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.41 8.63 7.80 -92.71 -0.72 7.90 16 29 H 0.42 4.40 8.93 -92.71 -0.83 3.57 16 30 H 0.41 3.31 8.84 -92.71 -0.82 2.49 16 31 H 0.42 9.44 8.37 -92.71 -0.78 8.66 16 32 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.12 6.31 6.13 -2.91 -0.02 6.29 16 34 H 0.28 13.44 8.30 -92.71 -0.77 12.68 16 35 H 0.09 4.68 8.06 -2.91 -0.02 4.66 16 36 H 0.11 4.99 6.22 -2.91 -0.02 4.98 16 Total: -1.00 -70.32 312.05 -0.70 -71.01 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -1.98 Total: 38.17 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 4.62 Total: -13.37 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -5.26 Total: -95.71 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.11 Total: -40.85 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -70.32 -0.70 -71.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025401939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.019 kcal (2) G-P(sol) polarization free energy of solvation -70.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds