Wall clock time and date at job start Mon Mar 30 2020 02:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00202 * 2 1 4 4 C 1.50703 * 109.47104 * 270.00190 * 3 2 1 5 5 H 1.08000 * 119.99911 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99853 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99930 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 120.00352 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.47028 * 90.00092 * 8 6 4 10 10 H 1.48500 * 109.47219 * 209.99807 * 8 6 4 11 11 H 1.48494 * 109.47114 * 330.00474 * 8 6 4 12 12 C 1.34770 * 119.99672 * 179.97438 * 2 1 3 13 13 O 1.21588 * 119.99915 * 179.97438 * 12 2 1 14 14 N 1.34776 * 120.00191 * 0.02562 * 12 2 1 15 15 C 1.39435 * 119.99977 * 184.55040 * 14 12 2 16 16 C 1.39139 * 119.92425 * 324.84588 * 15 14 12 17 17 C 1.37661 * 120.07382 * 180.02562 * 16 15 14 18 18 C 1.39765 * 119.92637 * 359.97438 * 17 16 15 19 19 C 1.47575 * 120.07422 * 180.02562 * 18 17 16 20 20 N 1.34780 * 119.99702 * 180.02562 * 19 18 17 21 21 O 1.21589 * 120.00374 * 359.97438 * 19 18 17 22 22 C 1.39759 * 119.84938 * 0.27508 * 18 17 16 23 23 C 1.37664 * 119.92675 * 359.47011 * 22 18 17 24 24 H 1.08997 * 109.47550 * 270.00476 * 1 2 3 25 25 H 1.09005 * 109.46830 * 30.00160 * 1 2 3 26 26 H 1.09000 * 109.47381 * 150.00127 * 1 2 3 27 27 H 1.09006 * 109.47119 * 29.99964 * 3 2 1 28 28 H 1.08998 * 109.47588 * 149.99562 * 3 2 1 29 29 H 0.96998 * 119.99857 * 179.97438 * 7 6 4 30 30 H 0.96993 * 119.99898 * 4.54399 * 14 12 2 31 31 H 1.07991 * 119.96302 * 0.02562 * 16 15 14 32 32 H 1.07997 * 120.03877 * 179.97438 * 17 16 15 33 33 H 0.96998 * 120.00514 * 359.97438 * 20 19 18 34 34 H 0.97001 * 119.99714 * 179.72602 * 20 19 18 35 35 H 1.07996 * 120.03757 * 179.69889 * 22 18 17 36 36 H 1.07991 * 119.96623 * 180.25173 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8773 -1.6727 7 7 3.3465 3.2568 -2.9127 8 14 3.7340 3.9286 -0.2529 9 1 5.1071 3.5067 0.1236 10 1 3.7500 5.3553 -0.6648 11 1 2.8276 3.7595 0.9111 12 6 2.1388 -1.1672 0.0005 13 8 3.3547 -1.1672 0.0001 14 7 1.4649 -2.3344 0.0005 15 6 2.1587 -3.5400 0.0969 16 6 3.4045 -3.6741 -0.5080 17 6 4.0920 -4.8632 -0.4152 18 6 3.5374 -5.9362 0.2879 19 6 4.2717 -7.2122 0.3898 20 7 3.7352 -8.2462 1.0678 21 8 5.3603 -7.3311 -0.1386 22 6 2.2834 -5.7998 0.8898 23 6 1.6036 -4.6062 0.7976 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 3.8234 4.0827 -3.0899 30 1 0.4973 -2.3357 -0.0664 31 1 3.8327 -2.8445 -1.0507 32 1 5.0588 -4.9668 -0.8853 33 1 2.8666 -8.1515 1.4890 34 1 4.2161 -9.0862 1.1314 35 1 1.8499 -6.6285 1.4297 36 1 0.6365 -4.4988 1.2659 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049211013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:04 Heat of formation + Delta-G solvation = -54.675727 kcal Electronic energy + Delta-G solvation = -20668.516154 eV Core-core repulsion = 17344.986551 eV Total energy + Delta-G solvation = -3323.529602 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.84555 -40.80689 -39.15149 -36.78217 -35.92993 -34.83171 -34.54482 -31.94056 -31.17256 -29.89783 -27.46660 -25.45449 -23.98881 -23.83588 -21.69877 -20.97610 -19.46764 -19.15726 -19.04002 -18.28539 -17.73185 -16.74413 -16.70461 -16.10212 -15.92704 -15.80131 -15.36450 -15.10049 -14.86768 -14.49162 -14.42987 -14.06518 -13.71690 -13.66597 -13.57199 -13.21709 -12.80520 -12.43745 -12.31080 -12.03688 -11.75060 -11.49135 -11.27040 -10.97965 -10.82769 -10.69901 -10.00063 -9.59375 -9.07905 -8.33890 -6.39417 -0.22497 0.40230 1.33356 1.38894 1.46152 1.58585 1.79115 2.18534 2.31587 2.57239 2.89371 2.96659 3.02312 3.82862 3.94204 3.99425 4.25189 4.31830 4.39050 4.56350 4.62033 4.74051 4.87391 4.93555 4.99960 5.11848 5.27502 5.30637 5.44122 5.48722 5.54469 5.88816 5.95304 5.95863 6.25201 6.46592 6.62238 6.94680 7.22441 7.32909 7.52981 8.83201 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029908 B = 0.003693 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.989892 B = 7580.022192 C = 8126.575554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.615 5.615 3 C 0.239 3.761 4 C -0.538 4.538 5 H 0.027 0.973 6 C 0.009 3.991 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.232 1.232 12 C 0.691 3.309 13 O -0.617 6.617 14 N -0.672 5.672 15 C 0.188 3.812 16 C -0.159 4.159 17 C -0.054 4.054 18 C -0.177 4.177 19 C 0.565 3.435 20 N -0.825 5.825 21 O -0.597 6.597 22 C -0.043 4.043 23 C -0.143 4.143 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.020 0.980 29 H 0.268 0.732 30 H 0.425 0.575 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.419 0.581 34 H 0.413 0.587 35 H 0.183 0.817 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.071 -20.202 13.636 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.349 5.349 3 C 0.117 3.883 4 C -0.576 4.576 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.155 1.155 12 C 0.393 3.607 13 O -0.497 6.497 14 N -0.322 5.322 15 C 0.091 3.909 16 C -0.180 4.180 17 C -0.074 4.074 18 C -0.181 4.181 19 C 0.352 3.648 20 N -0.390 5.390 21 O -0.479 6.479 22 C -0.062 4.062 23 C -0.164 4.164 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.266 0.734 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.252 0.748 34 H 0.245 0.755 35 H 0.200 0.800 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.576 -19.851 13.176 26.068 hybrid contribution 0.353 0.792 -0.370 0.942 sum -10.222 -19.060 12.806 25.135 Atomic orbital electron populations 1.21990 0.77321 1.04076 1.03328 1.47124 1.08201 1.04359 1.75216 1.19302 0.92660 0.81150 0.95224 1.21593 1.36848 1.06672 0.92529 0.95492 1.25876 0.95267 0.99032 0.98666 1.70059 1.42718 1.24514 1.21417 0.85696 0.79563 0.77636 0.79905 1.20499 1.20106 1.15519 1.16151 0.85098 0.81343 0.78125 1.90885 1.13884 1.86410 1.58473 1.42523 1.11014 1.02320 1.76379 1.18071 0.92500 0.85733 0.94614 1.21202 0.96876 0.97753 1.02125 1.21050 0.98947 0.91496 0.95917 1.19880 0.97987 0.94115 1.06092 1.18313 0.84362 0.84703 0.77397 1.43484 1.25106 1.14870 1.55505 1.90805 1.23434 1.84230 1.49447 1.21467 0.91211 0.98052 0.95456 1.21202 1.03376 0.91804 0.99968 0.89601 0.90855 0.89753 0.92291 0.96204 0.92290 0.73368 0.87500 0.86529 0.74782 0.75476 0.80027 0.80613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.88 10.24 127.77 1.31 3.19 16 2 N -0.61 -23.97 2.86 -869.32 -2.48 -26.45 16 3 C 0.24 11.39 4.23 85.63 0.36 11.75 16 4 C -0.54 -31.49 9.94 25.60 0.25 -31.24 16 5 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 6 C 0.01 0.56 5.47 84.65 0.46 1.02 16 7 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 8 Si 0.95 44.21 27.47 68.60 1.88 46.09 16 9 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.23 -9.48 6.54 99.48 0.65 -8.83 16 12 C 0.69 27.94 8.12 179.06 1.45 29.39 16 13 O -0.62 -31.48 13.33 -3.99 -0.05 -31.53 16 14 N -0.67 -18.89 5.19 -317.16 -1.65 -20.54 16 15 C 0.19 5.15 6.30 38.37 0.24 5.39 16 16 C -0.16 -5.50 8.67 22.35 0.19 -5.31 16 17 C -0.05 -1.69 9.58 22.50 0.22 -1.47 16 18 C -0.18 -4.07 5.88 -20.08 -0.12 -4.19 16 19 C 0.57 12.90 8.04 86.71 0.70 13.60 16 20 N -0.82 -8.73 8.82 -175.78 -1.55 -10.28 16 21 O -0.60 -19.87 17.17 -3.99 -0.07 -19.94 16 22 C -0.04 -0.60 9.53 22.50 0.21 -0.39 16 23 C -0.14 -2.33 9.94 22.35 0.22 -2.11 16 24 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 2.01 8.07 -2.38 -0.02 1.99 16 26 H 0.08 1.56 6.30 -2.39 -0.02 1.55 16 27 H 0.06 2.51 7.13 -2.38 -0.02 2.49 16 28 H 0.02 1.02 6.85 -2.39 -0.02 1.01 16 29 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 30 H 0.42 8.01 6.51 -92.71 -0.60 7.40 16 31 H 0.11 4.67 6.20 -2.92 -0.02 4.66 16 32 H 0.12 3.94 7.64 -2.91 -0.02 3.92 16 33 H 0.42 1.06 6.85 -92.71 -0.64 0.43 16 34 H 0.41 3.38 8.93 -92.71 -0.83 2.55 16 35 H 0.18 0.51 6.39 -2.91 -0.02 0.49 16 36 H 0.18 1.33 8.06 -2.92 -0.02 1.31 16 Total: -1.00 -90.73 308.93 0.92 -89.80 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -0.97 Total: 13.15 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 5.51 Total: 19.64 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -5.38 Total: -117.21 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -0.12 Total: -51.47 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.09 kcal Total: -90.73 0.92 -89.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049211013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.128 kcal (2) G-P(sol) polarization free energy of solvation -90.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds