Wall clock time and date at job start Mon Mar 30 2020 01:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.46817 * 2 1 4 4 C 1.46894 * 111.00549 * 298.11874 * 3 2 1 5 5 C 1.50701 * 109.47454 * 292.92799 * 4 3 2 6 6 H 1.08003 * 119.99760 * 354.95192 * 5 4 3 7 7 C 1.37870 * 120.00196 * 174.95739 * 5 4 3 8 8 N 1.31515 * 120.00431 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00033 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47290 * 89.99764 * 9 7 5 11 11 H 1.48504 * 109.47306 * 209.99940 * 9 7 5 12 12 H 1.48504 * 109.46980 * 329.99757 * 9 7 5 13 13 C 1.46896 * 111.00233 * 62.07974 * 3 2 1 14 14 C 1.50697 * 109.47466 * 66.03953 * 13 3 2 15 15 N 1.30354 * 126.16331 * 90.04102 * 14 13 3 16 16 N 1.28654 * 109.58686 * 179.69599 * 15 14 13 17 17 C 1.31535 * 109.21969 * 0.44662 * 16 15 14 18 18 C 1.47032 * 126.40947 * 179.82665 * 17 16 15 19 19 C 1.36302 * 125.96914 * 359.68769 * 18 17 16 20 20 C 1.40720 * 106.72512 * 180.02562 * 19 18 17 21 21 C 1.34869 * 107.07845 * 0.02562 * 20 19 18 22 22 O 1.34225 * 108.73035 * 359.97438 * 21 20 19 23 23 O 1.34515 * 126.15980 * 270.00602 * 14 13 3 24 24 H 1.09000 * 109.47115 * 179.65025 * 1 2 3 25 25 H 1.08998 * 109.47165 * 299.65265 * 1 2 3 26 26 H 1.09002 * 109.47572 * 59.64790 * 1 2 3 27 27 H 1.09000 * 109.46814 * 240.00273 * 2 1 3 28 28 H 1.08993 * 109.47090 * 120.00415 * 2 1 3 29 29 H 1.09004 * 109.46728 * 52.92529 * 4 3 2 30 30 H 1.08998 * 109.47634 * 172.92118 * 4 3 2 31 31 H 0.97000 * 120.00254 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47023 * 306.04157 * 13 3 2 33 33 H 1.09001 * 109.47539 * 186.04621 * 13 3 2 34 34 H 1.08000 * 126.63530 * 359.73827 * 19 18 17 35 35 H 1.07998 * 126.46557 * 179.97438 * 20 19 18 36 36 H 1.07996 * 125.63385 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5857 2.0968 -1.2095 5 6 2.2651 1.4997 -2.4149 6 1 3.0112 0.7292 -2.2877 7 6 1.9342 1.9369 -3.6798 8 7 1.0253 2.8747 -3.8348 9 14 2.7768 1.1971 -5.1739 10 1 2.0028 0.0216 -5.6474 11 1 2.8471 2.2120 -6.2558 12 1 4.1507 0.7696 -4.8063 13 6 1.5896 2.0954 1.2117 14 6 2.2534 1.4804 2.4168 15 7 3.3993 1.8339 2.9280 16 7 3.6579 1.1022 3.9541 17 6 2.6794 0.2407 4.1293 18 6 2.5907 -0.7757 5.1880 19 6 3.5158 -0.9978 6.1641 20 6 3.0266 -2.0559 6.9524 21 6 1.8410 -2.4261 6.4269 22 8 1.5807 -1.6512 5.3622 23 8 1.7698 0.4683 3.1592 24 1 -0.3633 -1.0276 -0.0063 25 1 -0.3633 0.5084 0.8931 26 1 -0.3634 0.5193 -0.8868 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.5051 2.0035 -1.3180 30 1 1.8528 3.1503 -1.1266 31 1 0.7928 3.1826 -4.7247 32 1 0.5072 2.0174 1.3138 33 1 1.8728 3.1453 1.1372 34 1 4.4464 -0.4677 6.3027 35 1 3.5099 -2.4904 7.8149 36 1 1.2056 -3.2149 6.8014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:32 Heat of formation + Delta-G solvation = 69.769407 kcal Electronic energy + Delta-G solvation = -20917.366951 eV Core-core repulsion = 17599.233695 eV Total energy + Delta-G solvation = -3318.133257 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.08037 -42.90411 -37.57091 -36.10881 -33.64389 -32.91325 -32.32149 -30.29473 -29.23094 -27.55145 -25.35307 -24.18465 -23.48340 -22.52038 -21.65289 -21.27150 -19.68167 -18.63233 -17.47213 -16.72625 -16.32061 -16.26230 -15.73943 -15.22312 -14.94585 -14.44551 -14.16132 -13.51284 -13.29779 -13.12786 -13.01514 -12.41143 -12.36925 -11.99148 -11.93366 -11.77138 -11.30594 -11.12238 -11.01433 -10.80258 -10.65269 -10.55363 -10.22510 -10.16750 -9.92335 -9.34347 -8.55228 -8.49036 -7.48521 -6.09518 -4.10885 0.44170 1.67411 1.92995 2.17058 2.46818 2.66019 3.29244 3.36056 3.40963 3.92188 4.37410 4.43607 4.54545 4.67963 4.81278 4.91235 5.16756 5.26623 5.39834 5.42709 5.51606 5.58157 5.62002 5.66347 5.78878 5.89876 5.98677 6.00211 6.27588 6.53388 6.58846 6.74567 7.08754 7.24902 7.66377 7.87235 8.00423 8.31684 8.36894 8.95990 9.53552 11.01096 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033888 B = 0.003559 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.062641 B = 7865.450150 C = 8023.129065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.527 5.527 4 C 0.190 3.810 5 C -0.508 4.508 6 H 0.064 0.936 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.137 3.863 14 C 0.209 3.791 15 N -0.271 5.271 16 N -0.252 5.252 17 C 0.217 3.783 18 C 0.048 3.952 19 C -0.127 4.127 20 C -0.216 4.216 21 C -0.008 4.008 22 O -0.163 6.163 23 O -0.216 6.216 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.011 0.989 30 H 0.033 0.967 31 H 0.262 0.738 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 -8.929 19.546 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.072 4.072 3 N -0.252 5.252 4 C 0.066 3.934 5 C -0.546 4.546 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.007 3.993 14 C -0.001 4.001 15 N -0.119 5.119 16 N -0.103 5.103 17 C 0.010 3.990 18 C -0.003 4.003 19 C -0.149 4.149 20 C -0.235 4.235 21 C -0.078 4.078 22 O -0.058 6.058 23 O -0.095 6.095 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.029 0.971 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.184 0.816 35 H 0.179 0.821 36 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.249 -8.174 19.334 20.993 hybrid contribution -1.490 -1.071 -0.892 2.040 sum -1.240 -9.245 18.442 20.667 Atomic orbital electron populations 1.22380 0.98688 1.01594 1.02073 1.22055 0.92681 0.90784 1.01666 1.62439 1.59276 1.02285 1.01238 1.19877 0.95196 0.93914 0.84367 1.21073 1.22134 1.21653 0.89753 0.91768 1.24954 0.95226 0.95164 0.99059 1.69941 1.31812 1.28956 1.22992 0.86484 0.80038 0.78725 0.82133 1.20736 1.21204 1.19702 1.20757 0.96696 0.98266 0.83584 1.28441 0.91209 0.85249 0.95238 1.74486 1.12157 1.21197 1.04027 1.74869 1.20703 1.03334 1.11407 1.23548 0.87005 0.97995 0.90478 1.17854 0.90999 0.94459 0.96991 1.21877 1.00324 0.98919 0.93760 1.21850 0.97307 1.00447 1.03930 1.24391 0.98901 0.96974 0.87541 1.84141 1.40898 1.38302 1.42446 1.84993 1.44990 1.45145 1.34386 0.92953 0.93743 0.90718 0.89156 0.93605 0.97150 0.94940 0.92808 0.91534 0.86141 0.81639 0.82148 0.76974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 9.26 37.16 0.34 -2.94 16 2 C 0.06 1.09 5.71 -3.82 -0.02 1.07 16 3 N -0.53 -11.02 4.68 -237.53 -1.11 -12.13 16 4 C 0.19 4.63 4.53 -4.98 -0.02 4.61 16 5 C -0.51 -13.73 8.40 -34.44 -0.29 -14.02 16 6 H 0.06 1.75 7.38 -52.48 -0.39 1.36 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 9 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.14 2.39 5.38 -4.98 -0.03 2.37 16 14 C 0.21 3.70 7.03 -12.91 -0.09 3.61 16 15 N -0.27 -5.12 12.21 32.59 0.40 -4.73 16 16 N -0.25 -4.43 12.25 31.95 0.39 -4.04 16 17 C 0.22 3.49 8.28 -14.12 -0.12 3.38 16 18 C 0.05 0.63 7.24 -36.72 -0.27 0.37 16 19 C -0.13 -1.32 10.83 -39.34 -0.43 -1.74 16 20 C -0.22 -1.64 10.88 -39.84 -0.43 -2.07 16 21 C -0.01 -0.06 12.08 29.54 0.36 0.29 16 22 O -0.16 -1.93 10.67 4.54 0.05 -1.88 16 23 O -0.22 -3.68 10.25 3.41 0.03 -3.65 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.71 6.34 -51.93 -0.33 0.38 16 26 H 0.07 1.46 6.28 -51.93 -0.33 1.13 16 27 H 0.09 1.88 6.99 -51.93 -0.36 1.51 16 28 H 0.05 0.85 6.71 -51.93 -0.35 0.50 16 29 H 0.01 0.27 6.01 -51.93 -0.31 -0.04 16 30 H 0.03 0.83 7.91 -51.93 -0.41 0.42 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.07 1.06 6.07 -51.93 -0.32 0.75 16 33 H 0.12 1.99 7.92 -51.93 -0.41 1.58 16 34 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.21 0.64 8.06 -52.49 -0.42 0.21 16 LS Contribution 311.50 15.07 4.69 4.69 Total: -1.00 -31.17 311.50 -4.95 -36.12 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.03 Total: -2.09 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.09 Total: -3.60 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.41 Total: -45.84 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: 0.08 Total: -5.53 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.17 -4.95 -36.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.888 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds