Wall clock time and date at job start Mon Mar 30 2020 01:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.46817 * 2 1 4 4 C 1.46894 * 111.00549 * 298.11874 * 3 2 1 5 5 C 1.50701 * 109.47454 * 292.92799 * 4 3 2 6 6 H 1.08003 * 119.99760 * 354.95192 * 5 4 3 7 7 C 1.37870 * 120.00196 * 174.95739 * 5 4 3 8 8 N 1.31515 * 120.00431 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00033 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47290 * 89.99764 * 9 7 5 11 11 H 1.48504 * 109.47306 * 209.99940 * 9 7 5 12 12 H 1.48504 * 109.46980 * 329.99757 * 9 7 5 13 13 C 1.46896 * 111.00233 * 62.07974 * 3 2 1 14 14 C 1.50697 * 109.47466 * 66.03953 * 13 3 2 15 15 N 1.30354 * 126.16331 * 90.04102 * 14 13 3 16 16 N 1.28654 * 109.58686 * 179.69599 * 15 14 13 17 17 C 1.31535 * 109.21969 * 0.44662 * 16 15 14 18 18 C 1.47032 * 126.40947 * 179.82665 * 17 16 15 19 19 C 1.36302 * 125.96914 * 359.68769 * 18 17 16 20 20 C 1.40720 * 106.72512 * 180.02562 * 19 18 17 21 21 C 1.34869 * 107.07845 * 0.02562 * 20 19 18 22 22 O 1.34225 * 108.73035 * 359.97438 * 21 20 19 23 23 O 1.34515 * 126.15980 * 270.00602 * 14 13 3 24 24 H 1.09000 * 109.47115 * 179.65025 * 1 2 3 25 25 H 1.08998 * 109.47165 * 299.65265 * 1 2 3 26 26 H 1.09002 * 109.47572 * 59.64790 * 1 2 3 27 27 H 1.09000 * 109.46814 * 240.00273 * 2 1 3 28 28 H 1.08993 * 109.47090 * 120.00415 * 2 1 3 29 29 H 1.09004 * 109.46728 * 52.92529 * 4 3 2 30 30 H 1.08998 * 109.47634 * 172.92118 * 4 3 2 31 31 H 0.97000 * 120.00254 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47023 * 306.04157 * 13 3 2 33 33 H 1.09001 * 109.47539 * 186.04621 * 13 3 2 34 34 H 1.08000 * 126.63530 * 359.73827 * 19 18 17 35 35 H 1.07998 * 126.46557 * 179.97438 * 20 19 18 36 36 H 1.07996 * 125.63385 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5857 2.0968 -1.2095 5 6 2.2651 1.4997 -2.4149 6 1 3.0112 0.7292 -2.2877 7 6 1.9342 1.9369 -3.6798 8 7 1.0253 2.8747 -3.8348 9 14 2.7768 1.1971 -5.1739 10 1 2.0028 0.0216 -5.6474 11 1 2.8471 2.2120 -6.2558 12 1 4.1507 0.7696 -4.8063 13 6 1.5896 2.0954 1.2117 14 6 2.2534 1.4804 2.4168 15 7 3.3993 1.8339 2.9280 16 7 3.6579 1.1022 3.9541 17 6 2.6794 0.2407 4.1293 18 6 2.5907 -0.7757 5.1880 19 6 3.5158 -0.9978 6.1641 20 6 3.0266 -2.0559 6.9524 21 6 1.8410 -2.4261 6.4269 22 8 1.5807 -1.6512 5.3622 23 8 1.7698 0.4683 3.1592 24 1 -0.3633 -1.0276 -0.0063 25 1 -0.3633 0.5084 0.8931 26 1 -0.3634 0.5193 -0.8868 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.5051 2.0035 -1.3180 30 1 1.8528 3.1503 -1.1266 31 1 0.7928 3.1826 -4.7247 32 1 0.5072 2.0174 1.3138 33 1 1.8728 3.1453 1.1372 34 1 4.4464 -0.4677 6.3027 35 1 3.5099 -2.4904 7.8149 36 1 1.2056 -3.2149 6.8014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:32 Heat of formation + Delta-G solvation = 44.537212 kcal Electronic energy + Delta-G solvation = -20918.461101 eV Core-core repulsion = 17599.233695 eV Total energy + Delta-G solvation = -3319.227407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.36761 -43.67631 -39.19617 -37.41991 -34.90219 -34.44047 -33.55984 -31.54597 -30.73411 -29.06309 -26.96256 -25.33218 -25.16727 -23.90355 -22.56037 -22.18462 -21.30036 -19.54388 -18.76503 -18.42469 -17.77895 -17.19065 -17.02225 -16.66208 -16.46842 -15.93560 -15.88143 -14.76378 -14.38611 -14.12685 -14.00003 -13.72416 -13.65470 -13.60858 -13.32816 -13.13978 -13.11139 -12.81436 -12.62900 -12.53015 -12.31342 -11.98405 -11.75064 -11.60760 -11.33349 -10.97229 -10.59205 -9.47393 -9.15528 -8.19405 -6.27575 -0.62817 0.60991 0.83643 1.24804 1.41949 1.43502 1.50218 1.54639 1.64766 2.41163 2.78101 3.14369 3.21393 3.36028 3.72137 3.86580 3.96352 4.05065 4.08761 4.12740 4.22175 4.38479 4.46127 4.54480 4.62166 4.80922 4.88251 4.89375 4.93059 5.12860 5.27780 5.38299 5.42596 5.63919 5.85308 6.00126 6.15509 6.44652 6.85515 7.01240 7.40949 8.90932 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033888 B = 0.003559 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.062641 B = 7865.450150 C = 8023.129065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.060 3.940 3 N -0.542 5.542 4 C 0.206 3.794 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.142 3.858 14 C 0.201 3.799 15 N -0.293 5.293 16 N -0.281 5.281 17 C 0.235 3.765 18 C -0.007 4.007 19 C -0.108 4.108 20 C -0.220 4.220 21 C 0.016 3.984 22 O -0.183 6.183 23 O -0.221 6.221 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.054 0.946 29 H -0.001 1.001 30 H 0.013 0.987 31 H 0.265 0.735 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.172 0.828 35 H 0.196 0.804 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.168 -11.157 21.407 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.068 4.068 3 N -0.267 5.267 4 C 0.081 3.919 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.189 4.189 8 N -0.569 5.569 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.195 1.195 13 C 0.013 3.987 14 C -0.010 4.010 15 N -0.140 5.140 16 N -0.131 5.131 17 C 0.028 3.972 18 C -0.058 4.058 19 C -0.130 4.130 20 C -0.238 4.238 21 C -0.053 4.053 22 O -0.079 6.079 23 O -0.101 6.101 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.017 0.983 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.143 0.857 34 H 0.190 0.810 35 H 0.214 0.786 36 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 0.112 -10.399 21.217 23.628 hybrid contribution -1.438 -0.544 -1.213 1.959 sum -1.326 -10.943 20.003 22.840 Atomic orbital electron populations 1.22253 0.97028 1.02849 1.01502 1.21988 0.94026 0.89735 1.01034 1.62235 1.60145 1.02995 1.01322 1.19509 0.94122 0.92944 0.85329 1.21350 1.22069 1.21499 0.91112 0.92570 1.25735 0.95811 0.95518 1.01830 1.70041 1.33012 1.30088 1.23722 0.85494 0.78987 0.78148 0.78666 1.19822 1.20749 1.19529 1.20710 0.97714 0.98134 0.82176 1.28186 0.91243 0.85995 0.95610 1.74397 1.12741 1.22083 1.04776 1.74791 1.21768 1.04627 1.11872 1.24155 0.85780 0.97372 0.89923 1.17846 0.93252 0.96396 0.98292 1.22263 0.99572 0.98610 0.92550 1.22283 0.97400 0.99502 1.04639 1.25502 0.99028 0.95701 0.85069 1.84134 1.40908 1.38723 1.44130 1.84977 1.45340 1.45033 1.34755 0.90769 0.92275 0.93172 0.91129 0.92740 0.98298 0.96859 0.92626 0.89700 0.85676 0.81044 0.78647 0.72334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.09 9.26 71.98 0.67 -5.42 16 2 C 0.06 2.34 5.71 86.30 0.49 2.83 16 3 N -0.54 -23.11 4.68 -905.40 -4.24 -27.35 16 4 C 0.21 10.33 4.53 85.56 0.39 10.72 16 5 C -0.52 -28.83 8.40 25.60 0.21 -28.61 16 6 H 0.06 3.13 7.38 -2.91 -0.02 3.11 16 7 C 0.01 0.54 5.46 84.65 0.46 1.00 16 8 N -0.93 -53.86 13.29 21.44 0.28 -53.58 16 9 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 C 0.14 5.04 5.38 85.56 0.46 5.50 16 14 C 0.20 7.22 7.03 88.33 0.62 7.84 16 15 N -0.29 -11.34 12.21 -165.25 -2.02 -13.35 16 16 N -0.28 -10.06 12.25 -166.49 -2.04 -12.10 16 17 C 0.23 7.58 8.28 87.05 0.72 8.30 16 18 C -0.01 -0.19 7.24 24.13 0.17 -0.01 16 19 C -0.11 -2.02 10.83 22.42 0.24 -1.78 16 20 C -0.22 -2.44 10.88 22.10 0.24 -2.20 16 21 C 0.02 0.17 12.08 67.05 0.81 0.98 16 22 O -0.18 -3.93 10.67 -6.66 -0.07 -4.00 16 23 O -0.22 -7.56 10.25 -10.71 -0.11 -7.67 16 24 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.06 1.83 6.34 -2.39 -0.02 1.81 16 26 H 0.05 1.97 6.28 -2.39 -0.01 1.96 16 27 H 0.07 2.99 6.99 -2.39 -0.02 2.98 16 28 H 0.05 2.02 6.71 -2.39 -0.02 2.00 16 29 H 0.00 -0.03 6.01 -2.38 -0.01 -0.05 16 30 H 0.01 0.71 7.91 -2.39 -0.02 0.69 16 31 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.09 2.68 6.07 -2.39 -0.01 2.67 16 33 H 0.13 4.26 7.92 -2.39 -0.02 4.24 16 34 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.20 0.75 8.06 -2.91 -0.02 0.73 16 36 H 0.26 0.04 8.06 -2.91 -0.02 0.02 16 Total: -1.00 -69.14 311.50 0.43 -68.71 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.11 Total: 4.31 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 5.49 Total: -0.86 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -8.01 Total: -106.38 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.18 Total: -11.67 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -69.14 0.43 -68.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.247 kcal (2) G-P(sol) polarization free energy of solvation -69.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds