Wall clock time and date at job start Mon Mar 30 2020 01:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47309 * 2 1 4 4 C 1.36932 * 120.00008 * 266.80187 * 3 2 1 5 5 H 1.08006 * 120.00347 * 13.16586 * 4 3 2 6 6 C 1.38812 * 120.00186 * 193.16999 * 4 3 2 7 7 N 1.31623 * 120.00247 * 21.68088 * 6 4 3 8 8 Si 1.86799 * 120.00261 * 201.67678 * 6 4 3 9 9 H 1.48509 * 109.46727 * 90.00012 * 8 6 4 10 10 H 1.48502 * 109.47351 * 209.99859 * 8 6 4 11 11 H 1.48503 * 109.47311 * 330.00509 * 8 6 4 12 12 C 1.46500 * 120.00266 * 86.79888 * 3 2 1 13 13 C 1.50693 * 109.47029 * 87.01341 * 12 3 2 14 14 C 1.39870 * 126.04599 * 1.84010 * 13 12 3 15 15 N 1.30832 * 108.20789 * 180.23101 * 14 13 12 16 16 N 1.40090 * 108.20316 * 359.77778 * 15 14 13 17 17 C 1.46504 * 126.03471 * 180.02562 * 16 15 14 18 18 C 1.34949 * 107.92460 * 0.02562 * 16 15 14 19 19 C 1.50703 * 126.12189 * 179.97438 * 18 16 15 20 20 F 1.39899 * 109.47234 * 34.08248 * 19 18 16 21 21 F 1.39904 * 109.46837 * 154.07519 * 19 18 16 22 22 F 1.39893 * 109.47076 * 274.07380 * 19 18 16 23 23 H 1.09005 * 109.47223 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46876 * 300.00173 * 1 2 3 25 25 H 1.08991 * 109.47298 * 59.99835 * 1 2 3 26 26 H 1.08996 * 109.46847 * 239.99847 * 2 1 3 27 27 H 1.09004 * 109.47095 * 119.99850 * 2 1 3 28 28 H 0.96989 * 120.00768 * 179.97438 * 7 6 4 29 29 H 1.09007 * 109.46764 * 327.01609 * 12 3 2 30 30 H 1.08996 * 109.47202 * 207.02007 * 12 3 2 31 31 H 1.08000 * 125.89199 * 0.02562 * 14 13 12 32 32 H 1.08997 * 109.47273 * 269.97532 * 17 16 15 33 33 H 1.09000 * 109.47081 * 29.97859 * 17 16 15 34 34 H 1.09003 * 109.46789 * 149.97626 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3090 2.0046 -1.1840 5 1 1.9841 1.5693 -2.1176 6 6 3.0213 3.1960 -1.1846 7 7 3.7740 3.5133 -0.1525 8 14 2.9116 4.3492 -2.6501 9 1 1.7942 5.3056 -2.4448 10 1 4.1862 5.0989 -2.7865 11 1 2.6671 3.5598 -3.8839 12 6 2.1958 2.0954 1.2667 13 6 3.5689 1.8083 1.8172 14 6 4.5509 1.0195 1.2092 15 7 5.6017 1.0021 1.9885 16 7 5.3229 1.7848 3.1165 17 6 6.2308 2.0325 4.2394 18 6 4.0705 2.2702 2.9860 19 6 3.3567 3.1624 3.9686 20 9 4.2802 4.0197 4.5763 21 9 2.3913 3.9188 3.2955 22 9 2.7359 2.3772 4.9459 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.2720 4.3456 -0.1530 29 1 1.4415 1.7629 1.9800 30 1 2.0887 3.1669 1.0978 31 1 4.4567 0.5098 0.2618 32 1 6.0845 1.2664 5.0007 33 1 7.2617 2.0021 3.8866 34 1 6.0215 3.0135 4.6661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133953714.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:06 Heat of formation + Delta-G solvation = -37.011936 kcal Electronic energy + Delta-G solvation = -23194.018803 eV Core-core repulsion = 19329.398420 eV Total energy + Delta-G solvation = -3864.620383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.79207 -47.37246 -47.21198 -40.42989 -36.12469 -32.62918 -31.88241 -30.99289 -28.95442 -27.09001 -25.34749 -24.44261 -23.39048 -20.69651 -20.32561 -19.63826 -18.16719 -17.85807 -17.23847 -16.51346 -15.23370 -14.86715 -14.68926 -14.21548 -14.05350 -13.78712 -13.75612 -13.64428 -13.52839 -13.38374 -13.20325 -12.91361 -12.43917 -12.34531 -11.93812 -11.73704 -11.41332 -11.18476 -11.07599 -10.76314 -10.60520 -10.26308 -10.02066 -9.86960 -9.70701 -8.73143 -8.57787 -7.40142 -6.94986 -5.74656 -3.13688 2.28347 2.80357 3.28207 3.40173 3.48085 3.49148 3.77091 4.18562 4.50188 4.54560 4.82867 5.06563 5.33522 5.43595 5.45154 5.68826 5.91350 5.97571 6.23350 6.33408 6.40178 6.44168 6.55672 6.77694 6.81869 6.93722 7.11142 7.39580 7.55053 7.59747 7.78768 8.30353 8.43224 9.17581 9.83249 10.28757 11.26336 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017204 B = 0.007883 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.109318 B = 3551.009416 C = 3887.899680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.594 5.594 4 C -0.257 4.257 5 H 0.074 0.926 6 C 0.004 3.996 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.289 1.289 10 H -0.295 1.295 11 H -0.282 1.282 12 C 0.229 3.771 13 C -0.060 4.060 14 C 0.101 3.899 15 N -0.289 5.289 16 N -0.373 5.373 17 C 0.097 3.903 18 C -0.077 4.077 19 C 0.545 3.455 20 F -0.185 7.185 21 F -0.158 7.158 22 F -0.182 7.182 23 H 0.037 0.963 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.252 0.748 29 H 0.024 0.976 30 H 0.099 0.901 31 H 0.183 0.817 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 -2.738 8.727 9.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.015 3.985 3 N -0.315 5.315 4 C -0.386 4.386 5 H 0.092 0.908 6 C -0.194 4.194 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.217 1.217 10 H -0.221 1.221 11 H -0.207 1.207 12 C 0.102 3.898 13 C -0.074 4.074 14 C -0.085 4.085 15 N -0.110 5.110 16 N -0.161 5.161 17 C -0.045 4.045 18 C -0.200 4.200 19 C 0.489 3.511 20 F -0.167 7.167 21 F -0.139 7.139 22 F -0.164 7.164 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.117 0.883 31 H 0.200 0.800 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.259 -2.977 9.023 9.584 hybrid contribution -0.680 1.355 -0.732 1.683 sum 0.579 -1.622 8.291 8.468 Atomic orbital electron populations 1.22328 0.99768 0.99136 1.01454 1.20774 0.92100 0.86536 0.99046 1.44023 1.75634 1.09215 1.02671 1.19207 1.29729 1.04078 0.85576 0.90792 1.24753 0.97476 0.99770 0.97401 1.70063 1.28756 1.23982 1.30636 0.86374 0.76883 0.81546 0.82468 1.21673 1.22138 1.20743 1.19341 0.86744 0.98894 0.84856 1.20950 1.00966 0.96027 0.89504 1.23449 0.89181 0.97945 0.97945 1.77209 1.23669 1.14798 0.95327 1.47835 1.09934 1.40505 1.17831 1.21886 0.94132 1.02199 0.86278 1.20075 0.90628 1.08876 1.00397 1.17358 0.76973 0.78183 0.78557 1.93081 1.66249 1.72566 1.84782 1.93238 1.64055 1.76729 1.79860 1.93191 1.83746 1.74606 1.64838 0.94371 0.93743 0.92965 0.93269 0.94739 0.93696 0.95806 0.88289 0.80049 0.91750 0.89717 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 10.24 37.16 0.38 -2.46 16 2 C 0.14 2.72 6.40 -4.04 -0.03 2.69 16 3 N -0.59 -13.56 1.78 -174.62 -0.31 -13.87 16 4 C -0.26 -6.46 9.68 -15.06 -0.15 -6.61 16 5 H 0.07 1.85 7.92 -52.48 -0.42 1.44 16 6 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 7 N -0.89 -23.70 8.71 55.49 0.48 -23.21 16 8 Si 0.90 21.10 29.61 -169.99 -5.03 16.07 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.23 5.20 4.16 -5.20 -0.02 5.18 16 13 C -0.06 -1.33 4.24 -105.06 -0.45 -1.77 16 14 C 0.10 2.25 10.65 -17.37 -0.19 2.07 16 15 N -0.29 -6.19 12.58 30.62 0.39 -5.81 16 16 N -0.37 -7.26 4.01 -63.88 -0.26 -7.51 16 17 C 0.10 1.38 11.22 59.85 0.67 2.06 16 18 C -0.08 -1.56 6.38 -82.26 -0.53 -2.09 16 19 C 0.55 9.93 3.37 36.01 0.12 10.05 16 20 F -0.19 -3.10 14.74 2.25 0.03 -3.07 16 21 F -0.16 -3.06 15.12 2.25 0.03 -3.03 16 22 F -0.18 -3.07 17.30 2.25 0.04 -3.03 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.92 8.01 -51.93 -0.42 0.51 16 27 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.02 0.51 8.10 -51.92 -0.42 0.09 16 30 H 0.10 2.52 5.55 -51.93 -0.29 2.23 16 31 H 0.18 4.13 7.85 -52.49 -0.41 3.72 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.16 5.68 -51.93 -0.30 0.86 16 LS Contribution 296.65 15.07 4.47 4.47 Total: -1.00 -27.36 296.65 -4.33 -31.69 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -3.92 Total: -1.85 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -0.26 Total: 9.15 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.30 Total: -50.41 kcal Atomic # 9 Polarization: -9.23 SS G_CDS: 0.11 Total: -9.12 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.36 -4.33 -31.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133953714.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.317 kcal (2) G-P(sol) polarization free energy of solvation -27.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds