Wall clock time and date at job start Mon Mar 30 2020 01:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46738 * 2 1 4 4 C 1.34771 * 120.00089 * 179.97438 * 3 2 1 5 5 O 1.21585 * 119.99857 * 0.02562 * 4 3 2 6 6 N 1.34783 * 120.00289 * 179.97438 * 4 3 2 7 7 N 1.40103 * 119.99921 * 0.02562 * 6 4 3 8 8 C 1.34771 * 119.99917 * 179.97438 * 7 6 4 9 9 O 1.21551 * 120.00219 * 0.02562 * 8 7 6 10 10 C 1.47890 * 119.99974 * 179.97438 * 8 7 6 11 11 C 1.39921 * 120.02467 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.35891 * 180.02562 * 11 10 8 13 13 C 1.37746 * 120.41487 * 359.97438 * 12 11 10 14 14 C 1.40748 * 120.03636 * 0.04443 * 13 12 11 15 15 C 1.41440 * 120.17756 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99720 * 24.37140 * 15 14 13 17 17 C 1.39937 * 120.00148 * 204.36580 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.85017 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84477 * 17 15 14 20 20 H 1.48503 * 109.46837 * 90.00406 * 19 17 15 21 21 H 1.48497 * 109.47376 * 210.00134 * 19 17 15 22 22 H 1.48500 * 109.46917 * 330.00618 * 19 17 15 23 23 C 1.38995 * 120.02459 * 180.02562 * 10 8 7 24 24 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47411 * 299.99792 * 1 2 3 26 26 H 1.08999 * 109.47736 * 59.99972 * 1 2 3 27 27 H 1.08995 * 109.47005 * 240.00368 * 2 1 3 28 28 H 1.08995 * 109.47301 * 119.99814 * 2 1 3 29 29 H 0.97003 * 120.00337 * 0.02562 * 3 2 1 30 30 H 0.97004 * 120.00016 * 179.97438 * 6 4 3 31 31 H 0.97004 * 119.99944 * 359.97438 * 7 6 4 32 32 H 1.08009 * 119.81903 * 0.02562 * 11 10 8 33 33 H 1.08002 * 119.79301 * 180.02562 * 12 11 10 34 34 H 1.08002 * 119.98415 * 179.97438 * 13 12 11 35 35 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 36 36 H 1.07999 * 120.20287 * 359.70146 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3432 1.6276 0.0005 5 8 4.1334 0.7035 0.0005 6 7 3.7925 2.8984 0.0000 7 7 2.8820 3.9632 -0.0005 8 6 3.3312 5.2339 -0.0005 9 8 4.5262 5.4561 -0.0005 10 6 2.3701 6.3579 -0.0017 11 6 0.9944 6.1028 -0.0033 12 6 0.0893 7.1489 -0.0049 13 6 0.5314 8.4535 -0.0044 14 6 1.9115 8.7297 -0.0032 15 6 2.3688 10.0681 -0.0032 16 1 1.7367 10.8546 0.3819 17 6 3.6401 10.3732 -0.5021 18 7 4.2623 9.5194 -1.2737 19 14 4.4489 11.9997 -0.0663 20 1 5.2473 11.8385 1.1754 21 1 5.3400 12.4226 -1.1764 22 1 3.4022 13.0310 0.1486 23 6 2.8328 7.6686 -0.0022 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3879 2.1185 0.0004 30 1 4.7462 3.0757 0.0008 31 1 1.9283 3.7859 -0.0009 32 1 0.6371 5.0835 -0.0033 33 1 -0.9706 6.9415 -0.0058 34 1 -0.1813 9.2649 -0.0061 35 1 5.1436 9.7307 -1.6192 36 1 3.8938 7.8702 0.0031 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139165333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:07 Heat of formation + Delta-G solvation = -14.328990 kcal Electronic energy + Delta-G solvation = -20612.878565 eV Core-core repulsion = 17291.098528 eV Total energy + Delta-G solvation = -3321.780037 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42029 -39.08091 -37.22077 -35.48604 -35.40028 -33.88007 -31.51390 -30.44678 -29.63593 -29.26021 -25.44190 -23.52497 -23.07164 -21.24846 -21.01121 -20.21379 -19.05623 -17.94044 -16.88645 -15.97796 -15.94826 -15.64133 -15.15224 -14.74598 -14.73291 -14.58128 -14.01036 -13.99873 -13.36153 -12.89138 -12.73280 -12.66160 -12.08041 -11.88406 -11.77592 -11.34832 -11.21625 -11.07793 -10.85172 -10.61200 -10.56918 -10.20699 -9.84420 -9.37653 -9.34955 -9.32602 -8.19687 -7.76655 -7.67312 -6.91879 -4.53732 1.97111 2.04981 2.69087 2.94118 3.00434 3.02165 3.05418 3.07794 3.65550 3.83752 4.49420 4.68183 4.85208 4.86848 5.08542 5.34148 5.45608 5.54500 5.66298 5.76525 5.87594 6.08364 6.21959 6.47609 6.60789 6.66849 6.84731 6.86218 7.07653 7.21511 7.47165 7.55612 7.63314 7.78975 7.86580 8.03694 8.34197 8.36248 8.67486 8.68637 8.74257 10.02620 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028501 B = 0.003867 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.175299 B = 7239.183508 C = 8128.880674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.132 3.868 3 N -0.747 5.747 4 C 0.712 3.288 5 O -0.583 6.583 6 N -0.530 5.530 7 N -0.538 5.538 8 C 0.569 3.431 9 O -0.536 6.536 10 C -0.120 4.120 11 C -0.224 4.224 12 C -0.092 4.092 13 C -0.210 4.210 14 C 0.100 3.900 15 C -0.456 4.456 16 H 0.084 0.916 17 C 0.073 3.927 18 N -0.780 5.780 19 Si 0.912 3.088 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.087 4.087 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.394 0.606 30 H 0.442 0.558 31 H 0.417 0.583 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.287 0.713 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.207 -10.420 1.650 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.008 3.992 3 N -0.405 5.405 4 C 0.411 3.589 5 O -0.459 6.459 6 N -0.284 5.284 7 N -0.293 5.293 8 C 0.360 3.640 9 O -0.412 6.412 10 C -0.125 4.125 11 C -0.245 4.245 12 C -0.110 4.110 13 C -0.230 4.230 14 C 0.097 3.903 15 C -0.484 4.484 16 H 0.102 0.898 17 C -0.147 4.147 18 N -0.404 5.404 19 Si 0.737 3.263 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.107 4.107 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.229 0.771 30 H 0.288 0.712 31 H 0.260 0.740 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.680 -11.069 1.491 12.530 hybrid contribution -0.072 1.013 0.035 1.016 sum -5.752 -10.056 1.526 11.685 Atomic orbital electron populations 1.22035 0.94270 1.03343 1.02840 1.21195 0.94035 0.81400 1.02536 1.45209 1.05251 1.09461 1.80629 1.15673 0.83157 0.81696 0.78346 1.90998 1.54965 1.40542 1.59369 1.44439 1.06857 0.97129 1.79981 1.45154 1.05081 0.99523 1.79528 1.19098 0.89367 0.80610 0.74938 1.90744 1.16617 1.83915 1.49892 1.19168 0.91801 0.91932 1.09564 1.20250 0.91834 0.96599 1.15778 1.20420 0.97092 0.93146 1.00385 1.21119 0.95447 0.95005 1.11452 1.17591 0.90646 0.93315 0.88721 1.19642 0.99685 0.93577 1.35535 0.89836 1.25997 0.96954 0.99210 0.92570 1.69769 1.13675 1.35791 1.21142 0.86232 0.79542 0.81320 0.79255 1.19049 1.20143 1.18499 1.21636 1.01153 0.89082 0.98871 0.90571 0.91783 0.91761 0.91404 0.91412 0.77146 0.71238 0.74037 0.89495 0.88642 0.88396 0.90225 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.03 37.16 0.37 -0.63 16 2 C 0.13 1.19 6.39 -4.04 -0.03 1.16 16 3 N -0.75 -8.20 5.52 -65.23 -0.36 -8.56 16 4 C 0.71 10.58 8.68 -86.92 -0.75 9.83 16 5 O -0.58 -10.46 17.18 5.29 0.09 -10.37 16 6 N -0.53 -8.19 6.26 27.63 0.17 -8.01 16 7 N -0.54 -8.38 6.21 30.54 0.19 -8.19 16 8 C 0.57 11.54 7.89 -12.31 -0.10 11.44 16 9 O -0.54 -12.60 16.17 5.32 0.09 -12.52 16 10 C -0.12 -2.60 5.87 -105.04 -0.62 -3.21 16 11 C -0.22 -4.21 9.55 -38.92 -0.37 -4.58 16 12 C -0.09 -1.78 10.01 -39.73 -0.40 -2.18 16 13 C -0.21 -4.63 9.78 -38.81 -0.38 -5.01 16 14 C 0.10 2.48 5.57 -106.87 -0.60 1.89 16 15 C -0.46 -11.35 9.05 -37.73 -0.34 -11.70 16 16 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 17 C 0.07 1.75 5.14 -17.34 -0.09 1.66 16 18 N -0.78 -19.75 10.95 55.55 0.61 -19.14 16 19 Si 0.91 18.02 29.60 -169.99 -5.03 12.99 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 21 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 C -0.09 -2.18 8.23 -38.44 -0.32 -2.49 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.39 3.56 6.39 -40.82 -0.26 3.29 16 30 H 0.44 7.21 8.10 -182.59 -1.48 5.73 16 31 H 0.42 5.21 4.72 -182.59 -0.86 4.35 16 32 H 0.09 1.25 6.38 -52.48 -0.33 0.92 16 33 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.29 6.68 8.30 -40.82 -0.34 6.35 16 36 H 0.14 3.69 5.74 -52.49 -0.30 3.39 16 LS Contribution 313.76 15.07 4.73 4.73 Total: -1.00 -29.94 313.76 -8.87 -38.81 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -5.75 Total: 14.08 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -3.61 Total: -3.82 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.61 Total: -43.91 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.18 Total: -22.89 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.94 -8.87 -38.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139165333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.486 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds