Wall clock time and date at job start Mon Mar 30 2020 01:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46738 * 2 1 4 4 C 1.34771 * 120.00089 * 179.97438 * 3 2 1 5 5 O 1.21585 * 119.99857 * 0.02562 * 4 3 2 6 6 N 1.34783 * 120.00289 * 179.97438 * 4 3 2 7 7 N 1.40103 * 119.99921 * 0.02562 * 6 4 3 8 8 C 1.34771 * 119.99917 * 179.97438 * 7 6 4 9 9 O 1.21551 * 120.00219 * 0.02562 * 8 7 6 10 10 C 1.47890 * 119.99974 * 179.97438 * 8 7 6 11 11 C 1.39921 * 120.02467 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.35891 * 180.02562 * 11 10 8 13 13 C 1.37746 * 120.41487 * 359.97438 * 12 11 10 14 14 C 1.40748 * 120.03636 * 0.04443 * 13 12 11 15 15 C 1.41440 * 120.17756 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99720 * 24.37140 * 15 14 13 17 17 C 1.39937 * 120.00148 * 204.36580 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.85017 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84477 * 17 15 14 20 20 H 1.48503 * 109.46837 * 90.00406 * 19 17 15 21 21 H 1.48497 * 109.47376 * 210.00134 * 19 17 15 22 22 H 1.48500 * 109.46917 * 330.00618 * 19 17 15 23 23 C 1.38995 * 120.02459 * 180.02562 * 10 8 7 24 24 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47411 * 299.99792 * 1 2 3 26 26 H 1.08999 * 109.47736 * 59.99972 * 1 2 3 27 27 H 1.08995 * 109.47005 * 240.00368 * 2 1 3 28 28 H 1.08995 * 109.47301 * 119.99814 * 2 1 3 29 29 H 0.97003 * 120.00337 * 0.02562 * 3 2 1 30 30 H 0.97004 * 120.00016 * 179.97438 * 6 4 3 31 31 H 0.97004 * 119.99944 * 359.97438 * 7 6 4 32 32 H 1.08009 * 119.81903 * 0.02562 * 11 10 8 33 33 H 1.08002 * 119.79301 * 180.02562 * 12 11 10 34 34 H 1.08002 * 119.98415 * 179.97438 * 13 12 11 35 35 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 36 36 H 1.07999 * 120.20287 * 359.70146 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3432 1.6276 0.0005 5 8 4.1334 0.7035 0.0005 6 7 3.7925 2.8984 0.0000 7 7 2.8820 3.9632 -0.0005 8 6 3.3312 5.2339 -0.0005 9 8 4.5262 5.4561 -0.0005 10 6 2.3701 6.3579 -0.0017 11 6 0.9944 6.1028 -0.0033 12 6 0.0893 7.1489 -0.0049 13 6 0.5314 8.4535 -0.0044 14 6 1.9115 8.7297 -0.0032 15 6 2.3688 10.0681 -0.0032 16 1 1.7367 10.8546 0.3819 17 6 3.6401 10.3732 -0.5021 18 7 4.2623 9.5194 -1.2737 19 14 4.4489 11.9997 -0.0663 20 1 5.2473 11.8385 1.1754 21 1 5.3400 12.4226 -1.1764 22 1 3.4022 13.0310 0.1486 23 6 2.8328 7.6686 -0.0022 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3879 2.1185 0.0004 30 1 4.7462 3.0757 0.0008 31 1 1.9283 3.7859 -0.0009 32 1 0.6371 5.0835 -0.0033 33 1 -0.9706 6.9415 -0.0058 34 1 -0.1813 9.2649 -0.0061 35 1 5.1436 9.7307 -1.6192 36 1 3.8938 7.8702 0.0031 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139165333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:06 Heat of formation + Delta-G solvation = -35.626771 kcal Electronic energy + Delta-G solvation = -20613.802106 eV Core-core repulsion = 17291.098528 eV Total energy + Delta-G solvation = -3322.703578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.73508 -40.56411 -38.87899 -36.89446 -36.39039 -35.60938 -33.03052 -31.51481 -31.28240 -30.59906 -27.19951 -24.71478 -24.26611 -22.83655 -22.21010 -21.73181 -20.34280 -19.56315 -18.33740 -17.55266 -17.07559 -16.89883 -16.65415 -16.34190 -16.02712 -15.84328 -15.39183 -15.08501 -15.06809 -14.54984 -14.28538 -13.50675 -13.28661 -13.00108 -12.83231 -12.68773 -12.66205 -12.51551 -12.32523 -12.19466 -11.98151 -11.82632 -11.51057 -11.08310 -11.02862 -10.34973 -9.68269 -9.40563 -9.30421 -8.66844 -6.37609 0.28558 0.70541 1.01251 1.38348 1.48411 1.51730 1.75951 1.92213 2.06006 2.19596 2.76378 3.45277 3.69233 3.99261 4.11642 4.27121 4.41314 4.55021 4.56988 4.87682 4.91273 5.07213 5.10204 5.15463 5.24572 5.28174 5.33229 5.35587 5.50058 5.53361 5.83185 5.91166 6.05517 6.23170 6.31171 6.54607 6.61925 6.88731 6.93956 7.12488 7.32803 8.29483 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028501 B = 0.003867 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.175299 B = 7239.183508 C = 8128.880674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 N -0.730 5.730 4 C 0.712 3.288 5 O -0.615 6.615 6 N -0.533 5.533 7 N -0.510 5.510 8 C 0.569 3.431 9 O -0.577 6.577 10 C -0.128 4.128 11 C -0.196 4.196 12 C -0.091 4.091 13 C -0.213 4.213 14 C 0.068 3.932 15 C -0.496 4.496 16 H 0.085 0.915 17 C 0.031 3.969 18 N -0.823 5.823 19 Si 0.980 3.020 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.251 1.251 23 C -0.127 4.127 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.406 0.594 30 H 0.436 0.564 31 H 0.434 0.566 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.109 0.891 35 H 0.286 0.714 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.208 -11.946 1.973 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.003 3.997 3 N -0.389 5.389 4 C 0.411 3.589 5 O -0.492 6.492 6 N -0.287 5.287 7 N -0.265 5.265 8 C 0.359 3.641 9 O -0.455 6.455 10 C -0.133 4.133 11 C -0.215 4.215 12 C -0.109 4.109 13 C -0.232 4.232 14 C 0.066 3.934 15 C -0.525 4.525 16 H 0.103 0.897 17 C -0.184 4.184 18 N -0.449 5.449 19 Si 0.801 3.199 20 H -0.192 1.192 21 H -0.196 1.196 22 H -0.174 1.174 23 C -0.147 4.147 24 H 0.109 0.891 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.243 0.757 30 H 0.281 0.719 31 H 0.281 0.719 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.784 -12.634 1.818 15.494 hybrid contribution 0.672 1.220 -0.043 1.394 sum -8.112 -11.414 1.774 14.115 Atomic orbital electron populations 1.22003 0.91428 1.04635 1.03515 1.21415 0.96264 0.79999 1.02054 1.45220 1.03808 1.10917 1.78960 1.15809 0.84194 0.80797 0.78119 1.90979 1.56235 1.41203 1.60805 1.44530 1.06656 0.97141 1.80347 1.44662 1.05846 0.98422 1.77525 1.18902 0.88526 0.81710 0.74955 1.90731 1.18260 1.84709 1.51845 1.19379 0.93664 0.91188 1.09043 1.20867 0.90080 0.99478 1.11106 1.20943 0.99699 0.91768 0.98470 1.21452 0.94405 0.97137 1.10250 1.17910 0.92167 0.93459 0.89866 1.19887 1.00936 0.94116 1.37538 0.89727 1.26800 0.97220 1.02449 0.91952 1.69866 1.14103 1.37894 1.22998 0.85228 0.78592 0.77395 0.78712 1.19222 1.19637 1.17399 1.21428 0.99751 0.91059 1.02501 0.89057 0.90999 0.91074 0.92009 0.91924 0.75717 0.71910 0.71934 0.83914 0.83819 0.87276 0.90299 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 10.03 71.98 0.72 -0.54 16 2 C 0.13 1.92 6.39 86.38 0.55 2.47 16 3 N -0.73 -13.81 5.52 -478.55 -2.64 -16.45 16 4 C 0.71 19.90 8.68 179.05 1.55 21.45 16 5 O -0.61 -21.54 17.18 -3.98 -0.07 -21.61 16 6 N -0.53 -15.77 6.26 -184.74 -1.16 -16.93 16 7 N -0.51 -14.67 6.21 -175.58 -1.09 -15.76 16 8 C 0.57 22.74 7.89 86.80 0.68 23.42 16 9 O -0.58 -27.95 16.17 -3.88 -0.06 -28.02 16 10 C -0.13 -5.44 5.87 -20.13 -0.12 -5.56 16 11 C -0.20 -6.50 9.55 22.70 0.22 -6.28 16 12 C -0.09 -3.12 10.01 22.17 0.22 -2.90 16 13 C -0.21 -9.05 9.78 22.77 0.22 -8.83 16 14 C 0.07 3.48 5.57 -21.32 -0.12 3.36 16 15 C -0.50 -25.74 9.05 23.47 0.21 -25.53 16 16 H 0.08 4.15 7.91 -2.91 -0.02 4.13 16 17 C 0.03 1.57 5.14 85.25 0.44 2.00 16 18 N -0.82 -44.32 10.95 21.82 0.24 -44.08 16 19 Si 0.98 38.46 29.60 68.60 2.03 40.49 16 20 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 21 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 22 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 23 C -0.13 -6.56 8.23 23.01 0.19 -6.37 16 24 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.41 5.54 6.39 -92.71 -0.59 4.95 16 30 H 0.44 14.21 8.10 -213.31 -1.73 12.48 16 31 H 0.43 8.93 4.72 -213.31 -1.01 7.93 16 32 H 0.14 3.10 6.38 -2.91 -0.02 3.09 16 33 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.11 4.30 8.06 -2.91 -0.02 4.27 16 35 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 36 H 0.10 5.85 5.74 -2.91 -0.02 5.83 16 Total: -1.00 -70.05 313.76 -0.15 -70.20 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: -2.18 Total: 35.45 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 4.78 Total: -3.30 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -4.65 Total: -93.22 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -0.13 Total: -49.62 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -70.05 -0.15 -70.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139165333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.572 kcal (2) G-P(sol) polarization free energy of solvation -70.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds