Wall clock time and date at job start Mon Mar 30 2020 01:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47223 * 2 1 4 4 C 1.50700 * 109.47122 * 120.00232 * 2 1 3 5 5 H 1.07999 * 120.00233 * 119.99630 * 4 2 1 6 6 C 1.37883 * 120.00085 * 300.27216 * 4 2 1 7 7 N 1.31511 * 119.99753 * 359.72896 * 6 4 2 8 8 Si 1.86800 * 120.00098 * 179.72345 * 6 4 2 9 9 H 1.48506 * 109.46862 * 60.00114 * 8 6 4 10 10 H 1.48496 * 109.47165 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47388 * 300.00461 * 8 6 4 12 12 N 1.46504 * 109.46984 * 240.00016 * 2 1 3 13 13 C 1.34775 * 120.00071 * 84.99919 * 12 2 1 14 14 O 1.21593 * 119.99828 * 0.02562 * 13 12 2 15 15 N 1.34766 * 120.00074 * 179.97438 * 13 12 2 16 16 C 1.39983 * 120.00304 * 175.39056 * 15 13 12 17 17 C 1.38982 * 120.00266 * 214.83023 * 16 15 13 18 18 C 1.38215 * 120.22388 * 179.76152 * 17 16 15 19 19 C 1.38022 * 120.22029 * 0.51475 * 18 17 16 20 20 C 1.39574 * 119.99580 * 359.74192 * 19 18 17 21 21 C 1.47857 * 120.11215 * 179.97438 * 20 19 18 22 22 N 1.34780 * 119.99872 * 0.02562 * 21 20 19 23 23 O 1.21549 * 119.99951 * 180.02562 * 21 20 19 24 24 C 1.38589 * 119.99565 * 35.10414 * 16 15 13 25 25 H 1.08989 * 109.46954 * 59.99991 * 1 2 3 26 26 H 1.09000 * 109.47223 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46847 * 299.99511 * 1 2 3 28 28 H 0.97002 * 120.00053 * 179.97438 * 7 6 4 29 29 H 0.97004 * 120.00212 * 264.99892 * 12 2 1 30 30 H 0.96999 * 120.00449 * 355.39095 * 15 13 12 31 31 H 1.08005 * 119.88628 * 359.97438 * 17 16 15 32 32 H 1.07994 * 119.88988 * 180.23721 * 18 17 16 33 33 H 1.08003 * 120.00039 * 179.77069 * 19 18 17 34 34 H 0.97004 * 119.99916 * 359.97438 * 22 21 20 35 35 H 0.97006 * 119.99815 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.11281 * 359.95796 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6946 -0.2427 2.4828 7 7 0.9385 0.8265 2.6034 8 14 2.3109 -1.1279 4.0079 9 1 3.7960 -1.1286 4.0136 10 1 1.8121 -0.4307 5.2204 11 1 1.8154 -2.5277 4.0021 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1616 -2.4116 15 7 2.5967 -0.6535 -3.4574 16 6 2.6392 0.0179 -4.6850 17 6 2.3847 -0.6727 -5.8640 18 6 2.4207 -0.0133 -7.0781 19 6 2.7199 1.3332 -7.1289 20 6 2.9822 2.0345 -5.9510 21 6 3.3036 3.4768 -6.0024 22 7 3.3432 4.1166 -7.1880 23 8 3.5321 4.0855 -4.9754 24 6 2.9406 1.3700 -4.7252 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7006 1.1554 3.4845 29 1 2.2490 -1.6318 -1.1527 30 1 2.8909 -1.5759 -3.3988 31 1 2.1548 -1.7274 -5.8309 32 1 2.2183 -0.5543 -7.9906 33 1 2.7506 1.8441 -8.0799 34 1 3.1611 3.6307 -8.0076 35 1 3.5537 5.0629 -7.2217 36 1 3.1424 1.9076 -3.8104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156937755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:26 Heat of formation + Delta-G solvation = -39.792439 kcal Electronic energy + Delta-G solvation = -20732.948189 eV Core-core repulsion = 17410.063975 eV Total energy + Delta-G solvation = -3322.884215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46990 -39.42314 -37.94064 -35.17691 -34.30226 -33.66709 -32.40322 -31.02619 -29.82217 -28.16074 -25.24133 -24.24072 -23.05665 -21.29326 -20.51962 -19.83605 -18.46016 -18.15590 -17.00672 -16.36228 -16.10200 -15.76062 -15.06629 -14.92748 -14.67966 -14.31507 -14.06856 -13.83192 -13.64430 -13.16258 -12.65646 -12.38257 -11.99828 -11.73716 -11.54762 -11.09624 -10.98229 -10.76309 -10.36087 -10.22085 -10.18687 -10.01764 -9.79571 -9.41732 -9.04756 -8.94934 -8.55619 -8.19096 -7.80111 -6.11067 -4.20707 0.82025 1.37477 2.83844 3.09683 3.26621 3.32190 3.33571 3.44134 3.70671 4.00830 4.33079 4.69078 4.74993 4.92900 4.99864 5.15732 5.21324 5.45337 5.51322 5.86078 6.20845 6.27342 6.39548 6.51486 6.70239 6.80557 6.98672 7.10236 7.11339 7.21802 7.23899 7.46096 7.62437 7.83282 7.99261 8.16304 8.21707 8.72113 8.83976 9.22114 9.47246 10.94922 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028243 B = 0.003739 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.142379 B = 7487.329635 C = 8080.338399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.717 5.717 13 C 0.690 3.310 14 O -0.576 6.576 15 N -0.697 5.697 16 C 0.174 3.826 17 C -0.130 4.130 18 C -0.109 4.109 19 C -0.115 4.115 20 C -0.124 4.124 21 C 0.562 3.438 22 N -0.855 5.855 23 O -0.528 6.528 24 C -0.061 4.061 25 H 0.015 0.985 26 H 0.025 0.975 27 H 0.091 0.909 28 H 0.265 0.735 29 H 0.386 0.614 30 H 0.404 0.596 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.399 0.601 35 H 0.403 0.597 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.637 -3.292 -21.332 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.368 5.368 13 C 0.390 3.610 14 O -0.453 6.453 15 N -0.345 5.345 16 C 0.078 3.922 17 C -0.152 4.152 18 C -0.128 4.128 19 C -0.135 4.135 20 C -0.128 4.128 21 C 0.348 3.652 22 N -0.420 5.420 23 O -0.404 6.404 24 C -0.083 4.083 25 H 0.034 0.966 26 H 0.045 0.955 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.218 0.782 30 H 0.239 0.761 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.228 0.772 35 H 0.234 0.766 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.353 -1.849 -20.280 20.639 hybrid contribution 0.435 -1.306 0.397 1.433 sum 3.787 -3.156 -19.884 20.486 Atomic orbital electron populations 1.22104 0.98499 0.99058 1.01008 1.18708 0.90889 0.93846 0.78764 0.93138 1.21160 1.32603 1.13396 0.90247 0.92117 1.24882 0.94792 0.94970 0.99025 1.69895 1.35602 1.22379 1.24047 0.86484 0.79147 0.79522 0.81777 1.20169 1.21106 1.20195 1.45868 1.68468 1.13295 1.09161 1.16210 0.78785 0.85556 0.80459 1.90923 1.56693 1.13896 1.83766 1.42858 1.68620 1.16392 1.06604 1.17465 0.97860 0.92081 0.84820 1.21090 1.01896 1.00622 0.91543 1.20771 1.00567 0.94155 0.97295 1.21118 1.00908 0.94752 0.96747 1.19726 1.05680 0.93180 0.94175 1.18322 0.76269 0.87187 0.83447 1.43738 1.75196 1.14274 1.08758 1.90874 1.48108 1.67949 1.33459 1.21613 0.94531 0.93469 0.98657 0.96575 0.95539 0.89038 0.92456 0.78156 0.76085 0.85369 0.85287 0.85962 0.77181 0.76623 0.82344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.16 0.34 -3.40 16 2 C 0.28 7.21 2.56 -69.08 -0.18 7.04 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -14.24 8.73 -34.44 -0.30 -14.55 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.11 11.31 55.43 0.63 -24.48 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.72 -14.97 5.07 -59.81 -0.30 -15.27 16 13 C 0.69 14.20 8.37 -86.93 -0.73 13.47 16 14 O -0.58 -14.39 13.43 5.28 0.07 -14.32 16 15 N -0.70 -10.60 5.34 -14.26 -0.08 -10.68 16 16 C 0.17 2.58 6.30 -83.73 -0.53 2.05 16 17 C -0.13 -1.41 9.96 -39.31 -0.39 -1.81 16 18 C -0.11 -1.00 10.02 -39.67 -0.40 -1.40 16 19 C -0.12 -1.13 9.54 -39.16 -0.37 -1.50 16 20 C -0.12 -1.72 5.87 -104.99 -0.62 -2.34 16 21 C 0.56 8.08 8.05 -12.32 -0.10 7.98 16 22 N -0.85 -7.39 8.82 30.53 0.27 -7.12 16 23 O -0.53 -10.31 17.18 5.32 0.09 -10.22 16 24 C -0.06 -1.05 8.24 -38.98 -0.32 -1.37 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.51 6.06 -51.93 -0.31 2.20 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.39 6.77 8.56 -40.82 -0.35 6.42 16 30 H 0.40 4.55 8.84 -40.82 -0.36 4.19 16 31 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.12 0.72 6.40 -52.48 -0.34 0.38 16 34 H 0.40 2.06 6.86 -40.82 -0.28 1.78 16 35 H 0.40 2.94 8.93 -40.82 -0.36 2.57 16 36 H 0.16 3.37 5.81 -52.49 -0.30 3.07 16 LS Contribution 311.69 15.07 4.70 4.70 Total: -1.00 -35.54 311.69 -7.26 -42.80 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -3.93 Total: 13.00 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -3.68 Total: 5.90 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.52 Total: -57.55 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.16 Total: -24.54 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.54 -7.26 -42.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156937755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.006 kcal (2) G-P(sol) polarization free energy of solvation -35.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds