Wall clock time and date at job start Mon Mar 30 2020 01:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47223 * 2 1 4 4 C 1.50700 * 109.47122 * 120.00232 * 2 1 3 5 5 H 1.07999 * 120.00233 * 119.99630 * 4 2 1 6 6 C 1.37883 * 120.00085 * 300.27216 * 4 2 1 7 7 N 1.31511 * 119.99753 * 359.72896 * 6 4 2 8 8 Si 1.86800 * 120.00098 * 179.72345 * 6 4 2 9 9 H 1.48506 * 109.46862 * 60.00114 * 8 6 4 10 10 H 1.48496 * 109.47165 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47388 * 300.00461 * 8 6 4 12 12 N 1.46504 * 109.46984 * 240.00016 * 2 1 3 13 13 C 1.34775 * 120.00071 * 84.99919 * 12 2 1 14 14 O 1.21593 * 119.99828 * 0.02562 * 13 12 2 15 15 N 1.34766 * 120.00074 * 179.97438 * 13 12 2 16 16 C 1.39983 * 120.00304 * 175.39056 * 15 13 12 17 17 C 1.38982 * 120.00266 * 214.83023 * 16 15 13 18 18 C 1.38215 * 120.22388 * 179.76152 * 17 16 15 19 19 C 1.38022 * 120.22029 * 0.51475 * 18 17 16 20 20 C 1.39574 * 119.99580 * 359.74192 * 19 18 17 21 21 C 1.47857 * 120.11215 * 179.97438 * 20 19 18 22 22 N 1.34780 * 119.99872 * 0.02562 * 21 20 19 23 23 O 1.21549 * 119.99951 * 180.02562 * 21 20 19 24 24 C 1.38589 * 119.99565 * 35.10414 * 16 15 13 25 25 H 1.08989 * 109.46954 * 59.99991 * 1 2 3 26 26 H 1.09000 * 109.47223 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46847 * 299.99511 * 1 2 3 28 28 H 0.97002 * 120.00053 * 179.97438 * 7 6 4 29 29 H 0.97004 * 120.00212 * 264.99892 * 12 2 1 30 30 H 0.96999 * 120.00449 * 355.39095 * 15 13 12 31 31 H 1.08005 * 119.88628 * 359.97438 * 17 16 15 32 32 H 1.07994 * 119.88988 * 180.23721 * 18 17 16 33 33 H 1.08003 * 120.00039 * 179.77069 * 19 18 17 34 34 H 0.97004 * 119.99916 * 359.97438 * 22 21 20 35 35 H 0.97006 * 119.99815 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.11281 * 359.95796 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6946 -0.2427 2.4828 7 7 0.9385 0.8265 2.6034 8 14 2.3109 -1.1279 4.0079 9 1 3.7960 -1.1286 4.0136 10 1 1.8121 -0.4307 5.2204 11 1 1.8154 -2.5277 4.0021 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1616 -2.4116 15 7 2.5967 -0.6535 -3.4574 16 6 2.6392 0.0179 -4.6850 17 6 2.3847 -0.6727 -5.8640 18 6 2.4207 -0.0133 -7.0781 19 6 2.7199 1.3332 -7.1289 20 6 2.9822 2.0345 -5.9510 21 6 3.3036 3.4768 -6.0024 22 7 3.3432 4.1166 -7.1880 23 8 3.5321 4.0855 -4.9754 24 6 2.9406 1.3700 -4.7252 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7006 1.1554 3.4845 29 1 2.2490 -1.6318 -1.1527 30 1 2.8909 -1.5759 -3.3988 31 1 2.1548 -1.7274 -5.8309 32 1 2.2183 -0.5543 -7.9906 33 1 2.7506 1.8441 -8.0799 34 1 3.1611 3.6307 -8.0076 35 1 3.5537 5.0629 -7.2217 36 1 3.1424 1.9076 -3.8104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156937755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:25 Heat of formation + Delta-G solvation = -69.976438 kcal Electronic energy + Delta-G solvation = -20734.257066 eV Core-core repulsion = 17410.063975 eV Total energy + Delta-G solvation = -3324.193091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.73527 -40.73822 -39.15226 -36.92196 -35.78207 -34.78234 -34.29740 -31.98367 -31.36464 -29.68371 -27.35210 -25.26437 -24.38473 -22.78053 -21.64243 -21.57628 -19.86215 -19.41922 -18.13000 -17.96738 -17.32924 -16.99537 -16.72683 -16.39397 -15.96012 -15.83880 -15.43389 -15.02235 -14.94159 -14.51002 -14.37857 -13.90615 -13.59129 -13.00254 -12.90450 -12.80307 -12.74192 -12.63301 -12.27857 -12.15238 -11.52962 -11.21412 -11.13588 -11.04058 -10.77673 -10.61134 -9.92777 -9.88888 -9.09099 -8.18093 -6.36418 -0.15807 0.38336 1.44473 1.47712 1.55276 1.71172 1.81302 2.19237 2.41313 2.50984 2.92500 3.12241 3.42881 3.86400 3.98551 4.16749 4.26219 4.47685 4.58377 4.71629 4.89750 4.94734 5.07027 5.26003 5.33742 5.37464 5.40173 5.50806 5.57711 5.64269 5.82560 5.85024 6.00791 6.07436 6.24336 6.42623 6.71194 7.21468 7.28892 7.32628 7.65873 8.88447 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028243 B = 0.003739 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.142379 B = 7487.329635 C = 8080.338399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.287 3.713 3 H -0.006 1.006 4 C -0.548 4.548 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.977 3.023 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.260 1.260 12 N -0.711 5.711 13 C 0.688 3.312 14 O -0.627 6.627 15 N -0.675 5.675 16 C 0.142 3.858 17 C -0.111 4.111 18 C -0.095 4.095 19 C -0.091 4.091 20 C -0.144 4.144 21 C 0.554 3.446 22 N -0.822 5.822 23 O -0.598 6.598 24 C -0.103 4.103 25 H 0.008 0.992 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.266 0.734 29 H 0.405 0.595 30 H 0.425 0.575 31 H 0.165 0.835 32 H 0.182 0.818 33 H 0.172 0.828 34 H 0.420 0.580 35 H 0.412 0.588 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -6.390 -24.759 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.184 3.816 3 H 0.012 0.988 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.801 3.199 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.364 5.364 13 C 0.388 3.612 14 O -0.508 6.508 15 N -0.325 5.325 16 C 0.047 3.953 17 C -0.131 4.131 18 C -0.113 4.113 19 C -0.111 4.111 20 C -0.148 4.148 21 C 0.341 3.659 22 N -0.387 5.387 23 O -0.480 6.480 24 C -0.125 4.125 25 H 0.027 0.973 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.241 0.759 30 H 0.264 0.736 31 H 0.182 0.818 32 H 0.200 0.800 33 H 0.189 0.811 34 H 0.254 0.746 35 H 0.245 0.755 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.577 -5.015 -23.844 24.627 hybrid contribution 0.388 -0.298 1.224 1.318 sum 3.966 -5.313 -22.620 23.572 Atomic orbital electron populations 1.21906 0.98266 0.99562 0.99421 1.18262 0.91031 0.91525 0.80824 0.98850 1.21503 1.32776 1.13808 0.90551 0.90520 1.25855 0.94803 0.95601 1.02462 1.70064 1.36857 1.23998 1.24749 0.85326 0.78545 0.78748 0.77262 1.19662 1.21230 1.18498 1.45409 1.68813 1.13961 1.08239 1.16363 0.78534 0.84926 0.81389 1.90911 1.58704 1.16416 1.84749 1.42426 1.67578 1.16978 1.05512 1.17735 1.00347 0.91623 0.85638 1.21527 0.99232 1.02121 0.90254 1.21426 0.97763 0.93788 0.98338 1.21655 0.97449 0.95270 0.96680 1.19801 1.07136 0.93073 0.94740 1.18643 0.75645 0.87724 0.83877 1.43443 1.72714 1.14723 1.07816 1.90841 1.51653 1.69327 1.36171 1.21313 0.98210 0.94954 0.97994 0.97320 0.93723 0.91397 0.92501 0.75927 0.73632 0.81778 0.80040 0.81105 0.74627 0.75549 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.01 9.26 71.98 0.67 -6.34 16 2 C 0.29 15.58 2.56 44.24 0.11 15.70 16 3 H -0.01 -0.42 7.58 -2.39 -0.02 -0.44 16 4 C -0.55 -29.65 8.73 25.60 0.22 -29.43 16 5 H 0.08 3.81 7.74 -2.91 -0.02 3.78 16 6 C 0.01 0.71 5.30 84.66 0.45 1.15 16 7 N -0.92 -54.23 11.31 21.45 0.24 -53.99 16 8 Si 0.98 42.63 29.54 68.60 2.03 44.66 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 12 N -0.71 -30.72 5.07 -461.41 -2.34 -33.06 16 13 C 0.69 29.89 8.37 179.06 1.50 31.39 16 14 O -0.63 -34.32 13.43 -4.01 -0.05 -34.37 16 15 N -0.67 -20.73 5.34 -317.28 -1.70 -22.43 16 16 C 0.14 4.16 6.30 38.10 0.24 4.40 16 17 C -0.11 -1.96 9.96 22.44 0.22 -1.73 16 18 C -0.10 -1.17 10.02 22.21 0.22 -0.95 16 19 C -0.09 -1.38 9.54 22.54 0.21 -1.17 16 20 C -0.14 -3.98 5.87 -20.10 -0.12 -4.10 16 21 C 0.55 16.46 8.05 86.79 0.70 17.16 16 22 N -0.82 -12.84 8.82 -175.59 -1.55 -14.39 16 23 O -0.60 -25.64 17.18 -3.87 -0.07 -25.71 16 24 C -0.10 -3.75 8.24 22.66 0.19 -3.57 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.07 3.91 6.06 -2.38 -0.01 3.89 16 28 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.41 14.10 8.56 -92.71 -0.79 13.31 16 30 H 0.42 8.99 8.84 -92.71 -0.82 8.18 16 31 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.17 0.86 6.40 -2.91 -0.02 0.84 16 34 H 0.42 2.71 6.86 -92.71 -0.64 2.08 16 35 H 0.41 5.48 8.93 -92.70 -0.83 4.65 16 36 H 0.10 4.78 5.81 -2.91 -0.02 4.76 16 Total: -1.00 -88.73 311.69 -0.72 -89.45 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -1.90 Total: 27.33 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 4.62 Total: 22.51 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -5.34 Total: -123.87 kcal Atomic # 8 Polarization: -59.96 SS G_CDS: -0.12 Total: -60.08 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -88.73 -0.72 -89.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156937755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.476 kcal (2) G-P(sol) polarization free energy of solvation -88.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds