Wall clock time and date at job start Mon Mar 30 2020 01:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47308 * 2 1 4 4 C 1.50703 * 109.46667 * 240.00045 * 2 1 3 5 5 H 1.07995 * 120.00215 * 274.93803 * 4 2 1 6 6 C 1.37882 * 119.99717 * 94.94077 * 4 2 1 7 7 N 1.31514 * 119.99757 * 184.88936 * 6 4 2 8 8 Si 1.86799 * 119.99921 * 4.89464 * 6 4 2 9 9 H 1.48497 * 109.47230 * 94.87554 * 8 6 4 10 10 H 1.48497 * 109.46910 * 214.87457 * 8 6 4 11 11 H 1.48494 * 109.47257 * 334.87333 * 8 6 4 12 12 N 1.46503 * 109.46716 * 120.00525 * 2 1 3 13 13 C 1.34771 * 119.99921 * 274.99001 * 12 2 1 14 14 O 1.21593 * 120.00209 * 0.02562 * 13 12 2 15 15 N 1.34777 * 120.00353 * 180.02562 * 13 12 2 16 16 C 1.39973 * 120.00368 * 184.56303 * 15 13 12 17 17 C 1.38983 * 119.99962 * 144.60340 * 16 15 13 18 18 C 1.38215 * 120.22548 * 179.76360 * 17 16 15 19 19 C 1.38018 * 120.21706 * 0.51424 * 18 17 16 20 20 C 1.39574 * 119.99671 * 359.74951 * 19 18 17 21 21 C 1.47866 * 120.11056 * 179.97438 * 20 19 18 22 22 N 1.34778 * 120.00118 * 0.02562 * 21 20 19 23 23 O 1.21544 * 120.00091 * 180.02562 * 21 20 19 24 24 C 1.38586 * 119.99860 * 324.88447 * 16 15 13 25 25 H 1.08991 * 109.47397 * 175.00971 * 1 2 3 26 26 H 1.08999 * 109.46955 * 295.01074 * 1 2 3 27 27 H 1.09000 * 109.46941 * 55.00433 * 1 2 3 28 28 H 0.97000 * 119.99483 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99584 * 95.00243 * 12 2 1 30 30 H 0.97003 * 119.99512 * 4.56418 * 15 13 12 31 31 H 1.08003 * 119.88814 * 0.02562 * 17 16 15 32 32 H 1.08001 * 119.88909 * 180.23851 * 18 17 16 33 33 H 1.08004 * 120.00123 * 179.71893 * 19 18 17 34 34 H 0.97009 * 119.99727 * 0.02562 * 22 21 20 35 35 H 0.96999 * 120.00377 * 180.02562 * 22 21 20 36 36 H 1.07997 * 120.10909 * 359.95564 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1363 -1.7854 -1.2288 6 6 2.3589 0.0120 -2.3586 7 7 2.7050 -0.6133 -3.4625 8 14 2.3101 1.8790 -2.3186 9 1 3.6666 2.4033 -2.0184 10 1 1.8626 2.3907 -3.6388 11 1 1.3623 2.3270 -1.2669 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0185 2.3571 14 8 1.8577 1.1612 2.4119 15 7 2.5968 -0.6537 3.4574 16 6 2.6403 0.0179 4.6847 17 6 2.3742 -0.6695 5.8629 18 6 2.4207 -0.0120 7.0778 19 6 2.7214 1.3341 7.1281 20 6 2.9848 2.0347 5.9500 21 6 3.3066 3.4770 6.0009 22 7 3.3464 4.1172 7.1862 23 8 3.5352 4.0852 4.9737 24 6 2.9431 1.3697 4.7244 25 1 -0.3634 -1.0237 -0.0894 26 1 -0.3633 0.4345 0.9313 27 1 -0.3633 0.5894 -0.8419 28 1 2.9352 -0.1050 -4.2560 29 1 2.2489 -1.6319 1.1525 30 1 2.8902 -1.5764 3.3988 31 1 2.1344 -1.7221 5.8295 32 1 2.2168 -0.5524 7.9904 33 1 2.7523 1.8454 8.0789 34 1 3.1644 3.6316 8.0060 35 1 3.5572 5.0634 7.2196 36 1 3.1464 1.9065 3.8096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156937921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:29 Heat of formation + Delta-G solvation = -39.685196 kcal Electronic energy + Delta-G solvation = -20852.954076 eV Core-core repulsion = 17530.074512 eV Total energy + Delta-G solvation = -3322.879564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54062 -39.50550 -38.02074 -35.28706 -34.37481 -33.72492 -32.38273 -31.07855 -30.30208 -28.59145 -25.30497 -24.29167 -23.11148 -21.25772 -20.55030 -19.87432 -18.56095 -18.30685 -17.06277 -16.55334 -16.25222 -16.04145 -15.17362 -14.90978 -14.73154 -14.43503 -14.02400 -13.91061 -13.62917 -13.21044 -12.75087 -12.52701 -12.37826 -12.02758 -11.61504 -11.53754 -11.07451 -10.79331 -10.61352 -10.28332 -10.07623 -9.84557 -9.83600 -9.52382 -9.17002 -9.00413 -8.70427 -8.31590 -7.91559 -6.23928 -4.27896 0.76976 1.32053 2.78359 3.01147 3.29544 3.37959 3.38727 3.47171 3.61747 3.93423 4.34217 4.62458 4.69426 4.77723 4.94244 5.11062 5.20056 5.40073 5.46273 5.80870 6.15945 6.21281 6.32135 6.37783 6.45509 6.53829 6.65171 6.69601 6.88275 7.04128 7.10772 7.18837 7.33381 7.47769 7.55883 8.16519 8.23468 8.64079 8.77571 9.10002 9.38505 10.87476 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023155 B = 0.004438 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.936827 B = 6307.858832 C = 7178.664083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.243 3.757 3 H 0.055 0.945 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.082 3.918 7 N -0.888 5.888 8 Si 0.871 3.129 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.255 1.255 12 N -0.712 5.712 13 C 0.689 3.311 14 O -0.581 6.581 15 N -0.695 5.695 16 C 0.173 3.827 17 C -0.128 4.128 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.124 4.124 21 C 0.562 3.438 22 N -0.855 5.855 23 O -0.529 6.529 24 C -0.062 4.062 25 H 0.046 0.954 26 H 0.029 0.971 27 H 0.052 0.948 28 H 0.268 0.732 29 H 0.390 0.610 30 H 0.406 0.594 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.399 0.601 35 H 0.403 0.597 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.426 0.205 23.855 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.140 3.860 3 H 0.073 0.927 4 C -0.568 4.568 5 H 0.097 0.903 6 C -0.122 4.122 7 N -0.524 5.524 8 Si 0.697 3.303 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.179 1.179 12 N -0.364 5.364 13 C 0.390 3.610 14 O -0.459 6.459 15 N -0.343 5.343 16 C 0.077 3.923 17 C -0.150 4.150 18 C -0.128 4.128 19 C -0.134 4.134 20 C -0.128 4.128 21 C 0.348 3.652 22 N -0.419 5.419 23 O -0.405 6.405 24 C -0.083 4.083 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.224 0.776 30 H 0.241 0.759 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.228 0.772 35 H 0.234 0.766 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.293 1.525 22.756 22.808 hybrid contribution 0.226 0.071 0.298 0.381 sum 0.519 1.596 23.054 23.115 Atomic orbital electron populations 1.22222 0.98640 1.00475 0.99295 1.19180 0.90804 0.94461 0.81514 0.92680 1.20997 1.45394 0.95600 0.94830 0.90348 1.24931 0.93463 0.98728 0.95120 1.69885 1.44584 1.36227 1.01708 0.86912 0.79717 0.85746 0.77884 1.19921 1.20992 1.17909 1.46015 1.68270 1.13610 1.08500 1.16297 0.78667 0.85564 0.80514 1.90911 1.57040 1.13981 1.83929 1.42844 1.68508 1.16450 1.06532 1.17465 0.97963 0.92084 0.84834 1.21106 1.01650 1.00719 0.91512 1.20782 1.00529 0.94156 0.97314 1.21126 1.00792 0.94751 0.96752 1.19722 1.05706 0.93181 0.94177 1.18324 0.76252 0.87184 0.83451 1.43738 1.75139 1.14292 1.08764 1.90869 1.48180 1.67986 1.33470 1.21596 0.94591 0.93463 0.98636 0.93499 0.95175 0.92883 0.92215 0.77633 0.75887 0.85299 0.85234 0.85933 0.77154 0.76609 0.82423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.47 37.16 0.35 -2.92 16 2 C 0.24 5.83 2.20 -69.08 -0.15 5.68 16 3 H 0.06 1.46 4.50 -51.93 -0.23 1.23 16 4 C -0.53 -14.23 9.05 -34.44 -0.31 -14.54 16 5 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 6 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 7 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 8 Si 0.87 21.89 27.31 -169.99 -4.64 17.25 16 9 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.25 -6.39 6.36 56.52 0.36 -6.03 16 12 N -0.71 -14.29 5.07 -59.81 -0.30 -14.59 16 13 C 0.69 13.60 8.37 -86.92 -0.73 12.87 16 14 O -0.58 -13.83 13.44 5.28 0.07 -13.76 16 15 N -0.70 -10.22 5.34 -14.26 -0.08 -10.30 16 16 C 0.17 2.47 6.29 -83.73 -0.53 1.95 16 17 C -0.13 -1.34 9.96 -39.31 -0.39 -1.73 16 18 C -0.11 -0.96 10.02 -39.67 -0.40 -1.35 16 19 C -0.11 -1.07 9.54 -39.16 -0.37 -1.45 16 20 C -0.12 -1.67 5.87 -104.99 -0.62 -2.29 16 21 C 0.56 7.88 8.05 -12.32 -0.10 7.78 16 22 N -0.85 -7.12 8.82 30.53 0.27 -6.85 16 23 O -0.53 -10.13 17.18 5.33 0.09 -10.04 16 24 C -0.06 -1.02 8.24 -38.98 -0.32 -1.34 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.39 6.70 8.61 -40.82 -0.35 6.34 16 30 H 0.41 4.42 8.84 -40.82 -0.36 4.06 16 31 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.12 0.68 6.40 -52.48 -0.34 0.34 16 34 H 0.40 1.94 6.86 -40.82 -0.28 1.66 16 35 H 0.40 2.82 8.93 -40.82 -0.36 2.46 16 36 H 0.16 3.27 5.81 -52.49 -0.31 2.96 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -36.20 311.08 -6.74 -42.94 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -3.94 Total: 11.22 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -3.66 Total: 4.86 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.66 Total: -57.15 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.16 Total: -23.80 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.64 Total: 17.25 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -36.20 -6.74 -42.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156937921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.253 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds