Wall clock time and date at job start Mon Mar 30 2020 01:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47308 * 2 1 4 4 C 1.50703 * 109.46667 * 240.00045 * 2 1 3 5 5 H 1.07995 * 120.00215 * 274.93803 * 4 2 1 6 6 C 1.37882 * 119.99717 * 94.94077 * 4 2 1 7 7 N 1.31514 * 119.99757 * 184.88936 * 6 4 2 8 8 Si 1.86799 * 119.99921 * 4.89464 * 6 4 2 9 9 H 1.48497 * 109.47230 * 94.87554 * 8 6 4 10 10 H 1.48497 * 109.46910 * 214.87457 * 8 6 4 11 11 H 1.48494 * 109.47257 * 334.87333 * 8 6 4 12 12 N 1.46503 * 109.46716 * 120.00525 * 2 1 3 13 13 C 1.34771 * 119.99921 * 274.99001 * 12 2 1 14 14 O 1.21593 * 120.00209 * 0.02562 * 13 12 2 15 15 N 1.34777 * 120.00353 * 180.02562 * 13 12 2 16 16 C 1.39973 * 120.00368 * 184.56303 * 15 13 12 17 17 C 1.38983 * 119.99962 * 144.60340 * 16 15 13 18 18 C 1.38215 * 120.22548 * 179.76360 * 17 16 15 19 19 C 1.38018 * 120.21706 * 0.51424 * 18 17 16 20 20 C 1.39574 * 119.99671 * 359.74951 * 19 18 17 21 21 C 1.47866 * 120.11056 * 179.97438 * 20 19 18 22 22 N 1.34778 * 120.00118 * 0.02562 * 21 20 19 23 23 O 1.21544 * 120.00091 * 180.02562 * 21 20 19 24 24 C 1.38586 * 119.99860 * 324.88447 * 16 15 13 25 25 H 1.08991 * 109.47397 * 175.00971 * 1 2 3 26 26 H 1.08999 * 109.46955 * 295.01074 * 1 2 3 27 27 H 1.09000 * 109.46941 * 55.00433 * 1 2 3 28 28 H 0.97000 * 119.99483 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99584 * 95.00243 * 12 2 1 30 30 H 0.97003 * 119.99512 * 4.56418 * 15 13 12 31 31 H 1.08003 * 119.88814 * 0.02562 * 17 16 15 32 32 H 1.08001 * 119.88909 * 180.23851 * 18 17 16 33 33 H 1.08004 * 120.00123 * 179.71893 * 19 18 17 34 34 H 0.97009 * 119.99727 * 0.02562 * 22 21 20 35 35 H 0.96999 * 120.00377 * 180.02562 * 22 21 20 36 36 H 1.07997 * 120.10909 * 359.95564 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1363 -1.7854 -1.2288 6 6 2.3589 0.0120 -2.3586 7 7 2.7050 -0.6133 -3.4625 8 14 2.3101 1.8790 -2.3186 9 1 3.6666 2.4033 -2.0184 10 1 1.8626 2.3907 -3.6388 11 1 1.3623 2.3270 -1.2669 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0185 2.3571 14 8 1.8577 1.1612 2.4119 15 7 2.5968 -0.6537 3.4574 16 6 2.6403 0.0179 4.6847 17 6 2.3742 -0.6695 5.8629 18 6 2.4207 -0.0120 7.0778 19 6 2.7214 1.3341 7.1281 20 6 2.9848 2.0347 5.9500 21 6 3.3066 3.4770 6.0009 22 7 3.3464 4.1172 7.1862 23 8 3.5352 4.0852 4.9737 24 6 2.9431 1.3697 4.7244 25 1 -0.3634 -1.0237 -0.0894 26 1 -0.3633 0.4345 0.9313 27 1 -0.3633 0.5894 -0.8419 28 1 2.9352 -0.1050 -4.2560 29 1 2.2489 -1.6319 1.1525 30 1 2.8902 -1.5764 3.3988 31 1 2.1344 -1.7221 5.8295 32 1 2.2168 -0.5524 7.9904 33 1 2.7523 1.8454 8.0789 34 1 3.1644 3.6316 8.0060 35 1 3.5572 5.0634 7.2196 36 1 3.1464 1.9065 3.8096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156937921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:28 Heat of formation + Delta-G solvation = -70.628679 kcal Electronic energy + Delta-G solvation = -20854.295886 eV Core-core repulsion = 17530.074512 eV Total energy + Delta-G solvation = -3324.221374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.75429 -40.75554 -39.17351 -36.93992 -35.78487 -34.77838 -34.37976 -31.98920 -31.88044 -29.86112 -27.34751 -25.26711 -24.34712 -22.63672 -21.63651 -21.57691 -20.06626 -19.43105 -18.41799 -18.09446 -17.44706 -17.00180 -16.68963 -16.36705 -16.01937 -15.85470 -15.40261 -15.02523 -14.94874 -14.63224 -14.48132 -14.33542 -13.74455 -13.30053 -13.05255 -12.81556 -12.80896 -12.66214 -12.46501 -11.88182 -11.53781 -11.23445 -11.20945 -11.06373 -10.85378 -10.78185 -9.94460 -9.92232 -9.10193 -8.42334 -6.47583 -0.16170 0.37599 1.24853 1.31918 1.44015 1.68188 1.80049 2.16690 2.24412 2.49652 2.91629 2.95081 3.41182 3.85689 3.98105 4.16208 4.25741 4.42286 4.49538 4.58321 4.71029 4.81218 4.93352 5.06968 5.27430 5.31415 5.35260 5.38692 5.44062 5.51162 5.71150 5.83525 5.94801 6.00544 6.27360 6.41823 6.58171 7.14206 7.21170 7.28018 7.59774 8.72470 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023155 B = 0.004438 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.936827 B = 6307.858832 C = 7178.664083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.247 3.753 3 H 0.028 0.972 4 C -0.523 4.523 5 H 0.063 0.937 6 C 0.039 3.961 7 N -0.926 5.926 8 Si 0.919 3.081 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.259 1.259 12 N -0.711 5.711 13 C 0.689 3.311 14 O -0.625 6.625 15 N -0.676 5.676 16 C 0.142 3.858 17 C -0.110 4.110 18 C -0.096 4.096 19 C -0.091 4.091 20 C -0.143 4.143 21 C 0.555 3.445 22 N -0.822 5.822 23 O -0.598 6.598 24 C -0.102 4.102 25 H 0.061 0.939 26 H 0.033 0.967 27 H 0.048 0.952 28 H 0.271 0.729 29 H 0.405 0.595 30 H 0.425 0.575 31 H 0.164 0.836 32 H 0.181 0.819 33 H 0.171 0.829 34 H 0.420 0.580 35 H 0.412 0.588 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 -1.040 28.240 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.143 3.857 3 H 0.046 0.954 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.162 4.162 7 N -0.564 5.564 8 Si 0.744 3.256 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.183 1.183 12 N -0.364 5.364 13 C 0.389 3.611 14 O -0.506 6.506 15 N -0.326 5.326 16 C 0.047 3.953 17 C -0.131 4.131 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.147 4.147 21 C 0.341 3.659 22 N -0.387 5.387 23 O -0.480 6.480 24 C -0.124 4.124 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.241 0.759 30 H 0.264 0.736 31 H 0.181 0.819 32 H 0.198 0.802 33 H 0.188 0.812 34 H 0.254 0.746 35 H 0.244 0.756 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.375 0.233 27.259 27.263 hybrid contribution 0.458 0.404 -0.808 1.013 sum 0.083 0.637 26.451 26.459 Atomic orbital electron populations 1.22102 0.97065 1.01374 0.99282 1.18887 0.91932 0.92941 0.81930 0.95389 1.21164 1.44292 0.94972 0.95727 0.91933 1.25500 0.93771 1.01833 0.95098 1.69959 1.46527 1.37530 1.02411 0.86158 0.79187 0.82122 0.78113 1.20548 1.19651 1.18287 1.45544 1.68770 1.14156 1.07899 1.16361 0.78474 0.84952 0.81291 1.90902 1.58820 1.16103 1.84790 1.42456 1.67515 1.17018 1.05590 1.17714 1.00362 0.91632 0.85600 1.21531 0.99114 1.02144 0.90316 1.21417 0.97818 0.93808 0.98326 1.21651 0.97429 0.95249 0.96720 1.19791 1.07126 0.93047 0.94748 1.18641 0.75636 0.87719 0.83864 1.43456 1.72692 1.14736 1.07866 1.90835 1.51676 1.69342 1.36118 1.21311 0.98141 0.94874 0.98026 0.91979 0.94821 0.93334 0.91931 0.75899 0.73642 0.81878 0.80167 0.81194 0.74644 0.75564 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.19 9.47 71.98 0.68 -5.51 16 2 C 0.25 12.10 2.20 44.25 0.10 12.20 16 3 H 0.03 1.54 4.50 -2.39 -0.01 1.53 16 4 C -0.52 -28.59 9.05 25.60 0.23 -28.36 16 5 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 6 C 0.04 2.23 5.47 84.66 0.46 2.69 16 7 N -0.93 -55.59 13.96 21.45 0.30 -55.29 16 8 Si 0.92 46.39 27.31 68.60 1.87 48.26 16 9 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 10 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.26 -13.11 6.36 99.48 0.63 -12.48 16 12 N -0.71 -28.88 5.07 -461.40 -2.34 -31.22 16 13 C 0.69 27.91 8.37 179.06 1.50 29.41 16 14 O -0.63 -31.47 13.44 -4.01 -0.05 -31.52 16 15 N -0.68 -19.65 5.34 -317.28 -1.69 -21.35 16 16 C 0.14 3.94 6.29 38.10 0.24 4.18 16 17 C -0.11 -1.83 9.96 22.44 0.22 -1.61 16 18 C -0.10 -1.09 10.02 22.21 0.22 -0.87 16 19 C -0.09 -1.29 9.54 22.54 0.21 -1.07 16 20 C -0.14 -3.76 5.87 -20.10 -0.12 -3.88 16 21 C 0.55 15.69 8.05 86.79 0.70 16.39 16 22 N -0.82 -11.97 8.82 -175.59 -1.55 -13.52 16 23 O -0.60 -24.63 17.18 -3.85 -0.07 -24.70 16 24 C -0.10 -3.52 8.24 22.66 0.19 -3.33 16 25 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.41 13.82 8.61 -92.71 -0.80 13.03 16 30 H 0.42 8.62 8.84 -92.71 -0.82 7.80 16 31 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 32 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 33 H 0.17 0.71 6.40 -2.91 -0.02 0.69 16 34 H 0.42 2.33 6.86 -92.70 -0.64 1.69 16 35 H 0.41 5.07 8.93 -92.71 -0.83 4.24 16 36 H 0.10 4.64 5.81 -2.91 -0.02 4.63 16 Total: -1.00 -86.83 311.08 -0.87 -87.70 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -1.98 Total: 21.40 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 4.64 Total: 20.24 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -5.29 Total: -121.38 kcal Atomic # 8 Polarization: -56.10 SS G_CDS: -0.12 Total: -56.22 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.87 Total: 48.26 kcal Total: -86.83 -0.87 -87.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156937921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.073 kcal (2) G-P(sol) polarization free energy of solvation -86.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds