Wall clock time and date at job start Mon Mar 30 2020 01:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46882 * 2 1 4 4 N 1.46499 * 109.47004 * 240.00157 * 2 1 3 5 5 C 1.34777 * 119.99944 * 84.99879 * 4 2 1 6 6 O 1.21584 * 119.99938 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00118 * 179.97438 * 5 4 2 8 8 C 1.39246 * 120.00140 * 175.70897 * 7 5 4 9 9 C 1.39479 * 119.83401 * 215.02222 * 8 7 5 10 10 C 1.36373 * 120.17210 * 179.76069 * 9 8 7 11 11 C 1.40876 * 119.82036 * 0.51402 * 10 9 8 12 12 C 1.41155 * 120.15829 * 179.71490 * 11 10 9 13 13 H 1.07998 * 119.99945 * 214.80344 * 12 11 10 14 14 C 1.39896 * 119.99926 * 34.81285 * 12 11 10 15 15 N 1.30881 * 120.00089 * 355.55054 * 14 12 11 16 16 Si 1.86800 * 119.99974 * 175.55481 * 14 12 11 17 17 H 1.48497 * 109.47334 * 89.99530 * 16 14 12 18 18 H 1.48503 * 109.47293 * 209.99739 * 16 14 12 19 19 H 1.48502 * 109.47114 * 329.99663 * 16 14 12 20 20 C 1.40869 * 119.67530 * 359.74125 * 11 10 9 21 21 C 1.36372 * 119.82914 * 359.97438 * 20 11 10 22 22 C 1.50693 * 109.47290 * 120.00067 * 2 1 3 23 23 N 1.34779 * 119.99832 * 300.00129 * 22 2 1 24 24 O 1.21282 * 120.00157 * 120.00158 * 22 2 1 25 25 H 1.09000 * 109.46882 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47137 * 299.99928 * 1 2 3 27 27 H 1.09002 * 109.47407 * 60.00130 * 1 2 3 28 28 H 0.96999 * 120.00261 * 264.99863 * 4 2 1 29 29 H 0.97000 * 119.99808 * 355.72099 * 7 5 4 30 30 H 1.08009 * 119.91118 * 0.02562 * 9 8 7 31 31 H 1.07991 * 120.08904 * 180.25343 * 10 9 8 32 32 H 0.97001 * 119.99835 * 180.02562 * 15 14 12 33 33 H 1.07993 * 120.08552 * 179.97438 * 20 11 10 34 34 H 1.07991 * 119.91758 * 179.97438 * 21 20 11 35 35 H 0.96998 * 120.00409 * 359.97438 * 23 22 2 36 36 H 0.97001 * 119.99756 * 179.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8574 1.1614 -2.4118 7 7 2.5967 -0.6533 -3.4575 8 6 2.6452 0.0167 -4.6772 9 6 2.3852 -0.6755 -5.8599 10 6 2.4261 -0.0251 -7.0579 11 6 2.7424 1.3471 -7.0996 12 6 2.7926 2.0260 -8.3361 13 1 3.5134 2.8154 -8.4899 14 6 1.9085 1.6764 -9.3624 15 7 1.0942 0.6633 -9.2079 16 14 1.8901 2.6553 -10.9532 17 1 2.8508 2.0564 -11.9142 18 1 0.5245 2.6272 -11.5360 19 1 2.2803 4.0607 -10.6741 20 6 3.0090 2.0381 -5.9013 21 6 2.9586 1.3754 -4.7105 22 6 2.0324 -0.7104 1.2304 23 7 1.7067 -0.2499 2.4545 24 8 2.7297 -1.6964 1.1191 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.2490 -1.6317 -1.1527 29 1 2.8864 -1.5773 -3.3998 30 1 2.1468 -1.7284 -5.8265 31 1 2.2206 -0.5614 -7.9724 32 1 0.4815 0.4207 -9.9197 33 1 3.2526 3.0899 -5.9256 34 1 3.1632 1.9036 -3.7911 35 1 1.1494 0.5389 2.5436 36 1 2.0298 -0.7074 3.2465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190926766.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:40 Heat of formation + Delta-G solvation = -46.132300 kcal Electronic energy + Delta-G solvation = -20591.355528 eV Core-core repulsion = 17268.196397 eV Total energy + Delta-G solvation = -3323.159132 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46076 -39.38263 -37.39603 -35.07648 -34.25126 -34.06677 -32.87761 -30.47060 -29.48255 -28.52324 -25.26613 -24.41669 -21.82467 -20.99875 -20.38860 -20.10272 -18.49229 -17.86592 -17.23078 -16.60495 -16.27132 -15.56215 -15.19544 -14.84924 -14.71576 -14.28634 -13.87222 -13.60643 -13.07932 -12.79489 -12.65975 -12.52224 -12.07615 -11.82009 -11.64739 -11.30911 -11.11827 -10.96203 -10.68446 -10.23915 -10.08100 -10.07033 -9.52013 -9.42096 -9.21525 -9.00669 -8.83653 -7.48537 -6.78545 -6.56365 -4.28539 2.26511 2.63544 2.82064 3.12333 3.12789 3.16853 3.21086 3.32498 3.71592 4.02240 4.45040 4.65656 4.75837 4.88927 4.98343 5.34621 5.59519 5.70661 5.99776 6.24967 6.34898 6.44893 6.53302 6.81665 6.85650 6.93884 7.09950 7.20595 7.31828 7.45764 7.70728 7.85480 7.91095 8.02444 8.14761 8.36234 8.50116 8.69335 8.96425 8.98618 9.12042 10.34835 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.049364 B = 0.003174 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.083725 B = 8818.704236 C = 8913.160442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.116 0.884 4 N -0.737 5.737 5 C 0.699 3.301 6 O -0.579 6.579 7 N -0.664 5.664 8 C 0.024 3.976 9 C -0.123 4.123 10 C -0.140 4.140 11 C 0.098 3.902 12 C -0.462 4.462 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.814 5.814 16 Si 0.915 3.085 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.264 1.264 20 C -0.204 4.204 21 C -0.086 4.086 22 C 0.517 3.483 23 N -0.850 5.850 24 O -0.539 6.539 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.402 0.598 29 H 0.393 0.607 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.277 0.723 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.404 0.596 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -3.183 16.969 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.133 0.867 4 N -0.396 5.396 5 C 0.400 3.600 6 O -0.456 6.456 7 N -0.310 5.310 8 C -0.069 4.069 9 C -0.143 4.143 10 C -0.160 4.160 11 C 0.095 3.905 12 C -0.493 4.493 13 H 0.093 0.907 14 C -0.145 4.145 15 N -0.441 5.441 16 Si 0.740 3.260 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.224 4.224 21 C -0.107 4.107 22 C 0.301 3.699 23 N -0.415 5.415 24 O -0.415 6.415 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.238 0.762 29 H 0.227 0.773 30 H 0.109 0.891 31 H 0.150 0.850 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.127 0.873 35 H 0.233 0.767 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.723 -2.841 16.516 16.847 hybrid contribution -0.148 -0.304 -0.178 0.383 sum -1.870 -3.146 16.338 16.743 Atomic orbital electron populations 1.22184 0.93051 1.02985 1.03728 1.20474 0.95376 0.97927 0.82645 0.86653 1.44819 1.72742 1.14104 1.07933 1.15917 0.78625 0.85295 0.80166 1.90899 1.56869 1.13932 1.83943 1.42081 1.66465 1.15448 1.06973 1.17083 1.14311 0.93137 0.82370 1.20300 1.03646 0.97996 0.92382 1.21175 1.03925 0.94665 0.96272 1.17715 0.89166 0.91322 0.92267 1.19475 1.16301 1.16927 0.96588 0.90695 1.25862 0.94389 0.94644 0.99635 1.69769 1.17754 1.23474 1.33133 0.86212 0.78072 0.80752 0.80997 1.19591 1.20370 1.18777 1.20801 1.11213 0.98243 0.92150 1.20418 0.99649 0.93025 0.97567 1.20774 0.79356 0.84260 0.85526 1.43765 1.55993 1.33938 1.07781 1.90746 1.37645 1.26375 1.86750 0.91953 0.91388 0.90105 0.76211 0.77332 0.89123 0.85046 0.91243 0.88654 0.87328 0.76703 0.76549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.38 37.16 0.35 -1.15 16 2 C 0.15 1.61 2.98 -69.09 -0.21 1.40 16 3 H 0.12 1.33 7.58 -51.93 -0.39 0.94 16 4 N -0.74 -10.08 4.96 -59.82 -0.30 -10.38 16 5 C 0.70 12.60 8.36 -86.92 -0.73 11.87 16 6 O -0.58 -12.45 13.42 5.29 0.07 -12.38 16 7 N -0.66 -12.13 5.31 -14.10 -0.07 -12.20 16 8 C 0.02 0.53 6.31 -83.57 -0.53 0.01 16 9 C -0.12 -2.85 9.90 -39.79 -0.39 -3.24 16 10 C -0.14 -3.65 8.62 -39.26 -0.34 -3.99 16 11 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 12 C -0.46 -12.47 9.02 -37.86 -0.34 -12.82 16 13 H 0.07 1.94 7.85 -52.49 -0.41 1.53 16 14 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 15 N -0.81 -21.42 10.60 55.55 0.59 -20.83 16 16 Si 0.91 19.24 29.56 -169.99 -5.03 14.21 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 20 C -0.20 -5.24 9.74 -39.26 -0.38 -5.62 16 21 C -0.09 -2.11 8.61 -39.79 -0.34 -2.45 16 22 C 0.52 5.23 7.49 -10.99 -0.08 5.14 16 23 N -0.85 -4.76 8.77 31.22 0.27 -4.49 16 24 O -0.54 -7.47 16.67 5.56 0.09 -7.38 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.41 7.57 -51.93 -0.39 0.01 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.40 5.00 7.81 -40.82 -0.32 4.68 16 29 H 0.39 5.80 8.83 -40.82 -0.36 5.44 16 30 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16 32 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 33 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 34 H 0.11 2.62 6.22 -52.49 -0.33 2.29 16 35 H 0.40 1.16 8.25 -40.82 -0.34 0.82 16 36 H 0.40 1.80 8.93 -40.82 -0.36 1.44 16 LS Contribution 311.84 15.07 4.70 4.70 Total: -1.00 -33.34 311.84 -7.40 -40.74 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -4.05 Total: 15.08 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -3.68 Total: -7.09 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.49 Total: -47.89 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.16 Total: -19.75 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.34 -7.40 -40.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190926766.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.390 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds