Wall clock time and date at job start Mon Mar 30 2020 01:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46882 * 2 1 4 4 N 1.46499 * 109.47004 * 240.00157 * 2 1 3 5 5 C 1.34777 * 119.99944 * 84.99879 * 4 2 1 6 6 O 1.21584 * 119.99938 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00118 * 179.97438 * 5 4 2 8 8 C 1.39246 * 120.00140 * 175.70897 * 7 5 4 9 9 C 1.39479 * 119.83401 * 215.02222 * 8 7 5 10 10 C 1.36373 * 120.17210 * 179.76069 * 9 8 7 11 11 C 1.40876 * 119.82036 * 0.51402 * 10 9 8 12 12 C 1.41155 * 120.15829 * 179.71490 * 11 10 9 13 13 H 1.07998 * 119.99945 * 214.80344 * 12 11 10 14 14 C 1.39896 * 119.99926 * 34.81285 * 12 11 10 15 15 N 1.30881 * 120.00089 * 355.55054 * 14 12 11 16 16 Si 1.86800 * 119.99974 * 175.55481 * 14 12 11 17 17 H 1.48497 * 109.47334 * 89.99530 * 16 14 12 18 18 H 1.48503 * 109.47293 * 209.99739 * 16 14 12 19 19 H 1.48502 * 109.47114 * 329.99663 * 16 14 12 20 20 C 1.40869 * 119.67530 * 359.74125 * 11 10 9 21 21 C 1.36372 * 119.82914 * 359.97438 * 20 11 10 22 22 C 1.50693 * 109.47290 * 120.00067 * 2 1 3 23 23 N 1.34779 * 119.99832 * 300.00129 * 22 2 1 24 24 O 1.21282 * 120.00157 * 120.00158 * 22 2 1 25 25 H 1.09000 * 109.46882 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47137 * 299.99928 * 1 2 3 27 27 H 1.09002 * 109.47407 * 60.00130 * 1 2 3 28 28 H 0.96999 * 120.00261 * 264.99863 * 4 2 1 29 29 H 0.97000 * 119.99808 * 355.72099 * 7 5 4 30 30 H 1.08009 * 119.91118 * 0.02562 * 9 8 7 31 31 H 1.07991 * 120.08904 * 180.25343 * 10 9 8 32 32 H 0.97001 * 119.99835 * 180.02562 * 15 14 12 33 33 H 1.07993 * 120.08552 * 179.97438 * 20 11 10 34 34 H 1.07991 * 119.91758 * 179.97438 * 21 20 11 35 35 H 0.96998 * 120.00409 * 359.97438 * 23 22 2 36 36 H 0.97001 * 119.99756 * 179.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8574 1.1614 -2.4118 7 7 2.5967 -0.6533 -3.4575 8 6 2.6452 0.0167 -4.6772 9 6 2.3852 -0.6755 -5.8599 10 6 2.4261 -0.0251 -7.0579 11 6 2.7424 1.3471 -7.0996 12 6 2.7926 2.0260 -8.3361 13 1 3.5134 2.8154 -8.4899 14 6 1.9085 1.6764 -9.3624 15 7 1.0942 0.6633 -9.2079 16 14 1.8901 2.6553 -10.9532 17 1 2.8508 2.0564 -11.9142 18 1 0.5245 2.6272 -11.5360 19 1 2.2803 4.0607 -10.6741 20 6 3.0090 2.0381 -5.9013 21 6 2.9586 1.3754 -4.7105 22 6 2.0324 -0.7104 1.2304 23 7 1.7067 -0.2499 2.4545 24 8 2.7297 -1.6964 1.1191 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.2490 -1.6317 -1.1527 29 1 2.8864 -1.5773 -3.3998 30 1 2.1468 -1.7284 -5.8265 31 1 2.2206 -0.5614 -7.9724 32 1 0.4815 0.4207 -9.9197 33 1 3.2526 3.0899 -5.9256 34 1 3.1632 1.9036 -3.7911 35 1 1.1494 0.5389 2.5436 36 1 2.0298 -0.7074 3.2465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190926766.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:39 Heat of formation + Delta-G solvation = -72.229923 kcal Electronic energy + Delta-G solvation = -20592.487206 eV Core-core repulsion = 17268.196397 eV Total energy + Delta-G solvation = -3324.290810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68192 -40.56605 -39.15269 -36.43335 -35.78773 -34.92579 -34.59057 -31.72708 -31.35334 -30.24457 -26.83941 -25.59263 -23.48776 -22.74028 -21.73228 -21.32876 -19.75076 -19.16875 -18.88042 -17.88678 -17.33450 -16.99330 -16.68735 -16.13357 -15.87746 -15.71819 -15.50077 -14.81577 -14.60097 -14.48022 -14.00367 -13.80147 -13.54334 -13.34787 -13.20260 -12.83383 -12.79017 -12.62060 -12.45704 -11.81381 -11.37866 -11.23477 -11.11889 -11.01946 -10.72708 -10.64164 -10.21353 -9.43346 -8.67340 -8.47082 -6.29491 0.86389 1.17619 1.41263 1.46592 1.47498 1.55204 1.62285 2.15664 2.26639 2.53393 2.84153 3.31641 3.71492 3.82867 4.02813 4.13430 4.42130 4.55163 4.64671 4.78337 4.95816 5.14525 5.17194 5.22189 5.34814 5.37634 5.46676 5.71237 5.79862 5.85775 6.05326 6.13080 6.25247 6.34197 6.42637 6.71490 7.00046 7.03868 7.08623 7.22916 7.61127 8.45600 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.049364 B = 0.003174 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.083725 B = 8818.704236 C = 8913.160442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 H 0.112 0.888 4 N -0.722 5.722 5 C 0.699 3.301 6 O -0.615 6.615 7 N -0.659 5.659 8 C 0.040 3.960 9 C -0.121 4.121 10 C -0.158 4.158 11 C 0.066 3.934 12 C -0.498 4.498 13 H 0.072 0.928 14 C 0.027 3.973 15 N -0.843 5.843 16 Si 0.988 3.012 17 H -0.260 1.260 18 H -0.270 1.270 19 H -0.263 1.263 20 C -0.218 4.218 21 C -0.096 4.096 22 C 0.523 3.477 23 N -0.824 5.824 24 O -0.580 6.580 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.052 0.948 28 H 0.411 0.589 29 H 0.413 0.587 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.284 0.716 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.420 0.580 36 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.339 -3.653 18.430 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.030 3.970 3 H 0.129 0.871 4 N -0.380 5.380 5 C 0.400 3.600 6 O -0.495 6.495 7 N -0.307 5.307 8 C -0.054 4.054 9 C -0.141 4.141 10 C -0.178 4.178 11 C 0.064 3.936 12 C -0.529 4.529 13 H 0.090 0.910 14 C -0.184 4.184 15 N -0.471 5.471 16 Si 0.809 3.191 17 H -0.185 1.185 18 H -0.194 1.194 19 H -0.187 1.187 20 C -0.238 4.238 21 C -0.117 4.117 22 C 0.306 3.694 23 N -0.389 5.389 24 O -0.459 6.459 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.071 0.929 28 H 0.248 0.752 29 H 0.249 0.751 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.252 0.748 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.376 -3.337 18.078 18.536 hybrid contribution 0.031 -0.201 -0.397 0.446 sum -2.345 -3.538 17.681 18.183 Atomic orbital electron populations 1.22143 0.91432 1.03450 1.04257 1.20719 0.96606 0.97563 0.82108 0.87060 1.44703 1.71508 1.14400 1.07369 1.16009 0.78242 0.84873 0.80890 1.90879 1.58312 1.15658 1.84650 1.41894 1.66757 1.16219 1.05809 1.17101 1.11661 0.92650 0.83952 1.20526 1.02541 0.99492 0.91539 1.21156 1.05156 0.94500 0.96969 1.18026 0.90477 0.92191 0.92947 1.19706 1.17609 1.17860 0.97740 0.90978 1.26727 0.93430 0.95522 1.02766 1.69834 1.18205 1.24592 1.34430 0.85110 0.78512 0.78972 0.76489 1.18493 1.19440 1.18686 1.20924 1.11780 0.98572 0.92502 1.20524 1.00071 0.94051 0.97020 1.20509 0.79008 0.83643 0.86231 1.43540 1.54823 1.33915 1.06611 1.90740 1.39702 1.28181 1.87313 0.91476 0.87572 0.92876 0.75206 0.75056 0.85937 0.86327 0.90553 0.88530 0.87234 0.74764 0.75316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.38 71.98 0.68 -1.85 16 2 C 0.14 2.82 2.98 44.24 0.13 2.95 16 3 H 0.11 2.40 7.58 -2.39 -0.02 2.38 16 4 N -0.72 -18.65 4.96 -461.43 -2.29 -20.94 16 5 C 0.70 24.48 8.36 179.05 1.50 25.98 16 6 O -0.61 -26.25 13.42 -3.98 -0.05 -26.30 16 7 N -0.66 -23.18 5.31 -316.78 -1.68 -24.86 16 8 C 0.04 1.81 6.31 38.56 0.24 2.05 16 9 C -0.12 -5.53 9.90 22.13 0.22 -5.31 16 10 C -0.16 -8.38 8.62 22.48 0.19 -8.18 16 11 C 0.07 3.70 5.55 -21.27 -0.12 3.58 16 12 C -0.50 -27.77 9.02 23.39 0.21 -27.56 16 13 H 0.07 3.89 7.85 -2.91 -0.02 3.86 16 14 C 0.03 1.41 5.42 85.24 0.46 1.87 16 15 N -0.84 -45.05 10.60 21.82 0.23 -44.82 16 16 Si 0.99 39.66 29.56 68.60 2.03 41.68 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 18 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 20 C -0.22 -11.53 9.74 22.48 0.22 -11.31 16 21 C -0.10 -4.75 8.61 22.13 0.19 -4.56 16 22 C 0.52 9.34 7.49 87.65 0.66 10.00 16 23 N -0.82 -6.62 8.77 -173.53 -1.52 -8.14 16 24 O -0.58 -15.04 16.67 -3.04 -0.05 -15.09 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.11 0.89 7.57 -2.38 -0.02 0.88 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.41 9.47 7.81 -92.71 -0.72 8.75 16 29 H 0.41 11.30 8.83 -92.71 -0.82 10.48 16 30 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 31 H 0.12 6.55 6.13 -2.92 -0.02 6.53 16 32 H 0.28 13.79 8.30 -92.71 -0.77 13.02 16 33 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 34 H 0.11 5.35 6.22 -2.92 -0.02 5.33 16 35 H 0.42 0.84 8.25 -92.71 -0.76 0.08 16 36 H 0.41 2.38 8.93 -92.71 -0.83 1.56 16 Total: -1.00 -73.97 311.84 -0.72 -74.69 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -1.96 Total: 36.12 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 4.58 Total: -12.34 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -5.26 Total: -98.77 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.10 Total: -41.39 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.68 kcal Total: -73.97 -0.72 -74.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190926766.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.463 kcal (2) G-P(sol) polarization free energy of solvation -73.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds