Wall clock time and date at job start Mon Mar 30 2020 01:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47176 * 2 1 4 4 N 1.46508 * 109.46918 * 119.99877 * 2 1 3 5 5 C 1.34777 * 119.99586 * 275.00076 * 4 2 1 6 6 O 1.21581 * 120.00289 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99587 * 179.97438 * 5 4 2 8 8 C 1.39238 * 119.99914 * 174.85603 * 7 5 4 9 9 C 1.39488 * 119.83532 * 325.32685 * 8 7 5 10 10 C 1.36367 * 120.17081 * 179.76057 * 9 8 7 11 11 C 1.40872 * 119.82997 * 0.51408 * 10 9 8 12 12 C 1.41147 * 120.16869 * 179.71893 * 11 10 9 13 13 H 1.08002 * 120.00546 * 205.36805 * 12 11 10 14 14 C 1.39895 * 119.99892 * 25.36974 * 12 11 10 15 15 N 1.30879 * 120.00214 * 16.81551 * 14 12 11 16 16 Si 1.86801 * 120.00273 * 196.81936 * 14 12 11 17 17 H 1.48499 * 109.47277 * 59.99291 * 16 14 12 18 18 H 1.48497 * 109.47358 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46717 * 299.99766 * 16 14 12 20 20 C 1.40872 * 119.66692 * 359.73749 * 11 10 9 21 21 C 1.36373 * 119.83128 * 0.02562 * 20 11 10 22 22 C 1.50699 * 109.47139 * 239.99787 * 2 1 3 23 23 N 1.34770 * 120.00223 * 60.00189 * 22 2 1 24 24 O 1.21281 * 119.99799 * 240.00336 * 22 2 1 25 25 H 1.09001 * 109.47176 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47416 * 300.00636 * 1 2 3 27 27 H 1.09002 * 109.46764 * 59.99928 * 1 2 3 28 28 H 0.96990 * 120.00100 * 94.99610 * 4 2 1 29 29 H 0.96996 * 120.00079 * 354.86016 * 7 5 4 30 30 H 1.08002 * 119.91275 * 0.02562 * 9 8 7 31 31 H 1.08001 * 120.09064 * 180.25146 * 10 9 8 32 32 H 0.97002 * 120.00771 * 179.97438 * 15 14 12 33 33 H 1.07999 * 120.08318 * 179.97438 * 20 11 10 34 34 H 1.08003 * 119.91489 * 179.97438 * 21 20 11 35 35 H 0.97006 * 119.99841 * 359.97438 * 23 22 2 36 36 H 0.96996 * 119.99813 * 179.72432 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1616 2.4116 7 7 2.5957 -0.6536 3.4578 8 6 2.8306 0.0630 4.6283 9 6 3.3111 1.3705 4.5569 10 6 3.5389 2.0803 5.6988 11 6 3.2980 1.4860 6.9531 12 6 3.5370 2.2120 8.1397 13 1 3.7548 1.6883 9.0587 14 6 3.4917 3.6102 8.1253 15 7 2.9181 4.2362 7.1293 16 14 4.2502 4.5838 9.5275 17 1 5.6993 4.2726 9.6193 18 1 4.0712 6.0362 9.2754 19 1 3.5834 4.2164 10.8026 20 6 2.8178 0.1632 7.0172 21 6 2.5901 -0.5324 5.8665 22 6 2.0323 -0.7104 -1.2304 23 7 1.7068 -0.2501 -2.4545 24 8 2.7295 -1.6966 -1.1191 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.2489 -1.6317 1.1528 29 1 2.7550 -1.6101 3.4345 30 1 3.4991 1.8234 3.5946 31 1 3.9071 3.0940 5.6419 32 1 2.8863 5.2056 7.1194 33 1 2.6312 -0.2991 7.9752 34 1 2.2223 -1.5467 5.9141 35 1 1.1488 0.5384 -2.5436 36 1 2.0335 -0.7051 -3.2464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192837403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:43 Heat of formation + Delta-G solvation = -47.279234 kcal Electronic energy + Delta-G solvation = -20649.267038 eV Core-core repulsion = 17326.058171 eV Total energy + Delta-G solvation = -3323.208866 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42026 -39.33525 -37.37669 -35.04878 -34.25357 -34.03251 -32.90747 -30.45532 -29.41404 -28.61359 -25.25540 -24.40527 -21.71529 -21.14235 -20.38822 -19.98721 -18.43865 -17.85221 -17.24982 -16.58844 -16.23580 -15.66034 -15.13188 -14.85799 -14.57858 -14.23822 -13.88924 -13.57804 -13.08329 -12.78876 -12.62994 -12.53212 -12.02678 -11.82197 -11.74412 -11.42986 -11.06678 -10.92565 -10.46758 -10.21090 -10.05409 -9.96642 -9.83906 -9.51097 -9.22524 -8.96746 -8.65228 -7.46029 -6.92760 -6.67153 -4.23134 2.29293 2.66562 2.84918 3.10469 3.12110 3.13993 3.20830 3.36963 3.75573 3.97962 4.47897 4.69553 4.70938 4.91704 5.01666 5.36811 5.61862 5.76515 6.00910 6.21082 6.37330 6.43412 6.52421 6.87204 6.87533 6.96317 7.10686 7.16735 7.35085 7.41254 7.67487 7.87525 7.92320 8.05933 8.11266 8.32516 8.54019 8.69013 8.94633 8.97935 9.16209 10.25610 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.037181 B = 0.003410 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.891615 B = 8208.080341 C = 8604.562497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.116 0.884 4 N -0.738 5.738 5 C 0.698 3.302 6 O -0.576 6.576 7 N -0.665 5.665 8 C 0.014 3.986 9 C -0.086 4.086 10 C -0.154 4.154 11 C 0.105 3.895 12 C -0.461 4.461 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.791 5.791 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.215 4.215 21 C -0.106 4.106 22 C 0.517 3.483 23 N -0.850 5.850 24 O -0.539 6.539 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.401 0.599 29 H 0.392 0.608 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.281 0.719 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.404 0.596 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 -6.162 -14.856 16.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.134 0.866 4 N -0.397 5.397 5 C 0.398 3.602 6 O -0.452 6.452 7 N -0.310 5.310 8 C -0.078 4.078 9 C -0.106 4.106 10 C -0.174 4.174 11 C 0.102 3.898 12 C -0.491 4.491 13 H 0.095 0.905 14 C -0.144 4.144 15 N -0.416 5.416 16 Si 0.733 3.267 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.235 4.235 21 C -0.127 4.127 22 C 0.301 3.699 23 N -0.415 5.415 24 O -0.415 6.415 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.237 0.763 29 H 0.225 0.775 30 H 0.119 0.881 31 H 0.137 0.863 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.233 0.767 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.400 -5.439 -14.625 15.970 hybrid contribution 0.210 -0.189 0.080 0.294 sum -3.191 -5.628 -14.545 15.919 Atomic orbital electron populations 1.22183 0.93115 1.02892 1.03736 1.20477 0.95322 0.97989 0.82667 0.86620 1.44807 1.72903 1.14147 1.07806 1.15918 0.78668 0.85339 0.80249 1.90940 1.56125 1.14096 1.84075 1.42064 1.68383 1.10650 1.09919 1.16971 1.13460 0.94366 0.83007 1.20427 0.98953 0.93087 0.98131 1.20975 1.04831 1.00346 0.91202 1.17647 0.88020 0.90880 0.93248 1.19490 1.42529 0.90896 0.96177 0.90500 1.25919 0.92955 0.98518 0.96961 1.69855 1.30951 1.10470 1.30321 0.86375 0.80647 0.78216 0.81486 1.18878 1.20392 1.19078 1.20536 1.10129 0.97168 0.95642 1.20021 1.02676 0.98266 0.91713 1.20770 0.79342 0.84251 0.85521 1.43764 1.55858 1.34081 1.07778 1.90744 1.37650 1.26389 1.86752 0.92005 0.90123 0.91399 0.76285 0.77528 0.88091 0.86263 0.90820 0.88670 0.89249 0.76698 0.76563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.38 37.16 0.35 -1.17 16 2 C 0.15 1.67 2.98 -69.08 -0.21 1.46 16 3 H 0.12 1.41 7.58 -51.93 -0.39 1.02 16 4 N -0.74 -10.34 4.96 -59.81 -0.30 -10.63 16 5 C 0.70 12.91 8.25 -86.92 -0.72 12.20 16 6 O -0.58 -12.93 13.74 5.29 0.07 -12.86 16 7 N -0.66 -12.29 5.31 -14.10 -0.07 -12.36 16 8 C 0.01 0.33 6.27 -83.57 -0.52 -0.19 16 9 C -0.09 -2.18 8.57 -39.79 -0.34 -2.52 16 10 C -0.15 -4.18 8.63 -39.26 -0.34 -4.52 16 11 C 0.10 2.85 5.57 -106.80 -0.59 2.25 16 12 C -0.46 -12.39 9.04 -37.86 -0.34 -12.74 16 13 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 14 C 0.07 1.90 5.15 -17.34 -0.09 1.81 16 15 N -0.79 -21.10 10.94 55.55 0.61 -20.49 16 16 Si 0.91 18.95 29.59 -169.99 -5.03 13.92 16 17 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 C -0.21 -5.29 9.74 -39.26 -0.38 -5.67 16 21 C -0.11 -2.38 9.89 -39.79 -0.39 -2.78 16 22 C 0.52 5.41 7.49 -10.99 -0.08 5.33 16 23 N -0.85 -5.05 8.77 31.22 0.27 -4.78 16 24 O -0.54 -7.64 16.67 5.56 0.09 -7.55 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.42 7.56 -51.93 -0.39 0.03 16 28 H 0.40 5.08 7.81 -40.82 -0.32 4.76 16 29 H 0.39 5.77 8.83 -40.82 -0.36 5.41 16 30 H 0.10 2.58 6.48 -52.49 -0.34 2.24 16 31 H 0.12 3.36 6.18 -52.49 -0.32 3.03 16 32 H 0.28 6.84 8.30 -40.82 -0.34 6.51 16 33 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 35 H 0.40 1.30 8.25 -40.82 -0.34 0.97 16 36 H 0.40 1.93 8.93 -40.82 -0.36 1.56 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -33.77 312.48 -7.38 -41.15 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -4.07 Total: 15.42 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -3.66 Total: -6.53 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.51 Total: -48.26 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.17 Total: -20.41 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.77 -7.38 -41.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192837403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.126 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds