Wall clock time and date at job start Mon Mar 30 2020 01:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 119.99930 * 2 1 4 4 N 1.34778 * 119.99778 * 179.97438 * 2 1 3 5 5 C 1.39922 * 119.99854 * 174.89555 * 4 2 1 6 6 C 1.38946 * 120.03697 * 326.60110 * 5 4 2 7 7 C 1.38134 * 120.06581 * 180.02562 * 6 5 4 8 8 C 1.38181 * 120.14341 * 359.97438 * 7 6 5 9 9 C 1.38898 * 120.06998 * 0.02562 * 8 7 6 10 10 N 1.39942 * 120.03286 * 180.02562 * 9 8 7 11 11 C 1.34776 * 119.99952 * 146.99514 * 10 9 8 12 12 O 1.21591 * 119.99815 * 354.62284 * 11 10 9 13 13 N 1.34771 * 120.00039 * 174.62053 * 11 10 9 14 14 C 1.46497 * 120.00435 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47511 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00055 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99884 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00031 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99944 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46977 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47148 * 119.99510 * 19 17 15 22 22 H 1.48495 * 109.46993 * 239.99605 * 19 17 15 23 23 C 1.38730 * 120.03476 * 146.86959 * 5 4 2 24 24 H 1.09001 * 109.47758 * 240.00463 * 1 2 3 25 25 H 1.09008 * 109.46948 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47338 * 120.00129 * 1 2 3 27 27 H 0.97003 * 120.00092 * 354.90936 * 4 2 1 28 28 H 1.08001 * 119.96450 * 359.97438 * 6 5 4 29 29 H 1.08006 * 119.92853 * 179.97438 * 7 6 5 30 30 H 1.08000 * 119.96357 * 180.02562 * 8 7 6 31 31 H 0.96997 * 119.99628 * 326.70824 * 10 9 8 32 32 H 0.97002 * 120.00044 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.46847 * 300.00485 * 14 13 11 34 34 H 1.08999 * 109.46925 * 59.99750 * 14 13 11 35 35 H 0.97008 * 120.00184 * 180.02562 * 18 17 15 36 36 H 1.08003 * 120.06930 * 0.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5759 -1.1697 -0.1073 6 6 4.2166 -0.1975 -0.8655 7 6 5.5938 -0.1997 -0.9728 8 6 6.3386 -1.1677 -0.3265 9 6 5.7041 -2.1423 0.4330 10 7 6.4592 -3.1219 1.0876 11 6 6.0410 -3.6173 2.2692 12 8 5.0617 -3.1453 2.8139 13 7 6.7082 -4.6358 2.8469 14 6 6.2541 -5.1740 4.1316 15 6 7.1653 -6.2966 4.5564 16 1 7.9990 -6.5811 3.9317 17 6 6.9339 -6.9612 5.7420 18 7 5.9183 -6.6150 6.5025 19 14 8.0638 -8.3523 6.2690 20 1 9.1231 -8.5440 5.2460 21 1 8.6894 -8.0150 7.5728 22 1 7.2768 -9.6040 6.4066 23 6 4.3205 -2.1462 0.5382 24 1 -0.3635 -0.5137 0.8900 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 1.6987 -2.0056 0.0754 28 1 3.6372 0.5602 -1.3721 29 1 6.0895 0.5569 -1.5631 30 1 7.4152 -1.1664 -0.4120 31 1 7.2813 -3.4474 0.6888 32 1 7.4892 -5.0126 2.4122 33 1 6.2749 -4.3852 4.8836 34 1 5.2365 -5.5507 4.0283 35 1 5.7557 -7.0824 7.3369 36 1 3.8245 -2.9058 1.1243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217300692.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:10 Heat of formation + Delta-G solvation = -39.194345 kcal Electronic energy + Delta-G solvation = -20354.699730 eV Core-core repulsion = 17031.841450 eV Total energy + Delta-G solvation = -3322.858279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.66344 -39.77026 -38.05710 -35.25095 -34.31528 -33.86454 -32.38285 -30.91215 -29.64469 -28.48510 -26.98894 -23.44739 -22.72290 -22.25181 -20.67014 -20.00619 -18.43747 -17.95753 -17.08499 -16.18625 -16.09753 -15.74465 -15.48639 -15.03427 -14.77812 -14.26116 -14.00479 -13.81330 -13.51966 -13.15465 -12.96747 -12.71583 -12.49411 -12.04433 -12.00320 -11.86738 -11.58655 -10.98047 -10.97037 -10.59749 -10.34644 -10.14488 -9.75607 -9.48677 -9.41848 -8.79673 -8.28115 -8.04964 -7.69584 -6.20688 -4.27694 1.31229 1.52884 2.46872 2.91125 3.19877 3.21050 3.29058 3.32344 3.64175 4.05836 4.28489 4.52170 4.88588 4.95289 5.04455 5.08732 5.15806 5.24333 5.36441 5.47756 5.58663 5.64839 5.78063 6.29155 6.32746 6.48024 6.53874 6.73304 7.01539 7.21690 7.29467 7.36611 7.46609 7.48026 7.78958 7.94894 7.97603 8.64984 8.79990 9.15623 9.39635 10.89491 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028013 B = 0.003290 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.312531 B = 8509.299320 C = 9339.050676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.528 6.528 4 N -0.672 5.672 5 C 0.161 3.839 6 C -0.147 4.147 7 C -0.083 4.083 8 C -0.170 4.170 9 C 0.201 3.799 10 N -0.695 5.695 11 C 0.689 3.311 12 O -0.582 6.582 13 N -0.721 5.721 14 C 0.265 3.735 15 C -0.543 4.543 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.148 4.148 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.412 0.588 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.404 0.596 32 H 0.389 0.611 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.221 8.753 -16.944 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.403 6.403 4 N -0.317 5.317 5 C 0.066 3.934 6 C -0.168 4.168 7 C -0.102 4.102 8 C -0.191 4.191 9 C 0.103 3.897 10 N -0.343 5.343 11 C 0.389 3.611 12 O -0.459 6.459 13 N -0.373 5.373 14 C 0.145 3.855 15 C -0.582 4.582 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.171 4.171 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.248 0.752 28 H 0.148 0.852 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.239 0.761 32 H 0.221 0.779 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.846 9.801 -16.147 19.772 hybrid contribution 1.120 -1.592 0.190 1.955 sum -4.726 8.209 -15.956 18.556 Atomic orbital electron populations 1.21928 0.90826 1.05860 1.04641 1.20975 0.90848 0.83161 0.75197 1.90740 1.70625 1.31224 1.47718 1.43579 1.05402 1.09949 1.72756 1.17511 0.82502 0.96982 0.96376 1.20975 0.94810 1.00217 1.00828 1.20714 0.93169 0.97558 0.98751 1.20835 0.99843 0.95443 1.03021 1.17195 0.89915 0.89112 0.93433 1.42838 1.27501 1.41926 1.22013 1.16180 0.83793 0.81062 0.80019 1.90901 1.28348 1.62484 1.64189 1.45784 1.31821 1.34016 1.25683 1.19057 0.95651 0.93394 0.77431 1.21239 1.13297 1.17280 1.06347 0.91813 1.24948 0.95525 0.97482 0.96054 1.69986 1.28240 1.41018 1.12942 0.86341 0.80364 0.81460 0.78618 1.19640 1.20769 1.20780 1.20915 0.92663 1.02104 1.01464 0.88964 0.88656 0.89090 0.75229 0.85217 0.85602 0.85780 0.76090 0.77876 0.95512 0.95514 0.92446 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.32 36.00 0.37 -0.77 16 2 C 0.51 5.91 7.68 -10.99 -0.08 5.83 16 3 O -0.53 -8.30 14.77 5.55 0.08 -8.22 16 4 N -0.67 -7.69 5.34 -9.88 -0.05 -7.75 16 5 C 0.16 2.30 6.27 -83.72 -0.53 1.77 16 6 C -0.15 -2.02 8.65 -39.36 -0.34 -2.36 16 7 C -0.08 -1.01 10.03 -39.64 -0.40 -1.40 16 8 C -0.17 -2.15 9.96 -39.36 -0.39 -2.54 16 9 C 0.20 3.05 6.28 -83.72 -0.53 2.52 16 10 N -0.69 -10.57 5.35 -14.24 -0.08 -10.65 16 11 C 0.69 13.90 8.30 -86.92 -0.72 13.18 16 12 O -0.58 -14.07 14.03 5.29 0.07 -13.99 16 13 N -0.72 -14.89 5.55 -66.42 -0.37 -15.26 16 14 C 0.27 6.93 5.43 -5.20 -0.03 6.90 16 15 C -0.54 -14.47 9.28 -34.44 -0.32 -14.79 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.88 -25.73 13.29 55.43 0.74 -25.00 16 19 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.15 -2.37 8.56 -39.21 -0.34 -2.71 16 24 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.09 0.62 8.12 -51.92 -0.42 0.20 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.41 3.47 8.82 -40.82 -0.36 3.11 16 28 H 0.13 1.78 6.41 -52.49 -0.34 1.44 16 29 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.40 4.62 8.83 -40.82 -0.36 4.26 16 32 H 0.39 6.74 8.34 -40.82 -0.34 6.40 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.14 2.51 6.41 -52.48 -0.34 2.17 16 LS Contribution 316.93 15.07 4.78 4.78 Total: -1.00 -35.31 316.93 -7.47 -42.78 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.23 Total: 10.48 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -3.40 Total: 7.28 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.24 Total: -58.65 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.16 Total: -22.21 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.31 -7.47 -42.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217300692.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.587 kcal (2) G-P(sol) polarization free energy of solvation -35.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds