Wall clock time and date at job start Mon Mar 30 2020 01:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 119.99930 * 2 1 4 4 N 1.34778 * 119.99778 * 179.97438 * 2 1 3 5 5 C 1.39922 * 119.99854 * 174.89555 * 4 2 1 6 6 C 1.38946 * 120.03697 * 326.60110 * 5 4 2 7 7 C 1.38134 * 120.06581 * 180.02562 * 6 5 4 8 8 C 1.38181 * 120.14341 * 359.97438 * 7 6 5 9 9 C 1.38898 * 120.06998 * 0.02562 * 8 7 6 10 10 N 1.39942 * 120.03286 * 180.02562 * 9 8 7 11 11 C 1.34776 * 119.99952 * 146.99514 * 10 9 8 12 12 O 1.21591 * 119.99815 * 354.62284 * 11 10 9 13 13 N 1.34771 * 120.00039 * 174.62053 * 11 10 9 14 14 C 1.46497 * 120.00435 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47511 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00055 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99884 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00031 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99944 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46977 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47148 * 119.99510 * 19 17 15 22 22 H 1.48495 * 109.46993 * 239.99605 * 19 17 15 23 23 C 1.38730 * 120.03476 * 146.86959 * 5 4 2 24 24 H 1.09001 * 109.47758 * 240.00463 * 1 2 3 25 25 H 1.09008 * 109.46948 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47338 * 120.00129 * 1 2 3 27 27 H 0.97003 * 120.00092 * 354.90936 * 4 2 1 28 28 H 1.08001 * 119.96450 * 359.97438 * 6 5 4 29 29 H 1.08006 * 119.92853 * 179.97438 * 7 6 5 30 30 H 1.08000 * 119.96357 * 180.02562 * 8 7 6 31 31 H 0.96997 * 119.99628 * 326.70824 * 10 9 8 32 32 H 0.97002 * 120.00044 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.46847 * 300.00485 * 14 13 11 34 34 H 1.08999 * 109.46925 * 59.99750 * 14 13 11 35 35 H 0.97008 * 120.00184 * 180.02562 * 18 17 15 36 36 H 1.08003 * 120.06930 * 0.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5759 -1.1697 -0.1073 6 6 4.2166 -0.1975 -0.8655 7 6 5.5938 -0.1997 -0.9728 8 6 6.3386 -1.1677 -0.3265 9 6 5.7041 -2.1423 0.4330 10 7 6.4592 -3.1219 1.0876 11 6 6.0410 -3.6173 2.2692 12 8 5.0617 -3.1453 2.8139 13 7 6.7082 -4.6358 2.8469 14 6 6.2541 -5.1740 4.1316 15 6 7.1653 -6.2966 4.5564 16 1 7.9990 -6.5811 3.9317 17 6 6.9339 -6.9612 5.7420 18 7 5.9183 -6.6150 6.5025 19 14 8.0638 -8.3523 6.2690 20 1 9.1231 -8.5440 5.2460 21 1 8.6894 -8.0150 7.5728 22 1 7.2768 -9.6040 6.4066 23 6 4.3205 -2.1462 0.5382 24 1 -0.3635 -0.5137 0.8900 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 1.6987 -2.0056 0.0754 28 1 3.6372 0.5602 -1.3721 29 1 6.0895 0.5569 -1.5631 30 1 7.4152 -1.1664 -0.4120 31 1 7.2813 -3.4474 0.6888 32 1 7.4892 -5.0126 2.4122 33 1 6.2749 -4.3852 4.8836 34 1 5.2365 -5.5507 4.0283 35 1 5.7557 -7.0824 7.3369 36 1 3.8245 -2.9058 1.1243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217300692.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:10 Heat of formation + Delta-G solvation = -66.485885 kcal Electronic energy + Delta-G solvation = -20355.883180 eV Core-core repulsion = 17031.841450 eV Total energy + Delta-G solvation = -3324.041729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.83326 -41.07936 -39.29104 -36.53562 -36.08334 -35.15281 -34.33724 -31.77482 -30.89692 -29.51346 -28.79633 -25.13634 -23.78942 -23.69327 -22.07231 -21.26081 -19.94114 -19.22810 -18.09930 -17.98317 -17.26687 -17.09171 -16.69227 -16.49169 -16.33126 -15.76589 -15.27515 -15.01492 -14.82536 -14.51760 -14.15018 -14.05301 -13.79904 -13.42741 -13.13181 -12.92874 -12.87726 -12.76435 -12.66590 -12.21963 -11.84027 -11.45667 -11.21269 -11.16020 -10.85108 -10.81391 -9.93538 -9.36082 -8.91768 -8.29304 -6.45533 0.24939 0.38441 1.43971 1.45291 1.55094 1.57901 1.68685 2.05456 2.18338 2.38956 2.89328 3.06317 3.39969 3.76268 4.01435 4.22653 4.26896 4.42892 4.50592 4.56968 4.63207 4.67684 5.02755 5.05887 5.24479 5.26202 5.32081 5.37009 5.44684 5.46919 5.58255 5.64697 5.82281 6.08722 6.18153 6.41097 6.65707 7.07885 7.16104 7.25033 7.58015 8.83100 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028013 B = 0.003290 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.312531 B = 8509.299320 C = 9339.050676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.503 3.497 3 O -0.574 6.574 4 N -0.668 5.668 5 C 0.151 3.849 6 C -0.155 4.155 7 C -0.076 4.076 8 C -0.158 4.158 9 C 0.176 3.824 10 N -0.671 5.671 11 C 0.690 3.310 12 O -0.627 6.627 13 N -0.714 5.714 14 C 0.285 3.715 15 C -0.554 4.554 16 H 0.085 0.915 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.985 3.015 20 H -0.253 1.253 21 H -0.280 1.280 22 H -0.279 1.279 23 C -0.170 4.170 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.120 0.880 27 H 0.424 0.576 28 H 0.129 0.871 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.425 0.575 32 H 0.408 0.592 33 H -0.013 1.013 34 H -0.010 1.010 35 H 0.269 0.731 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 8.484 -18.676 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.294 3.706 3 O -0.453 6.453 4 N -0.314 5.314 5 C 0.056 3.944 6 C -0.176 4.176 7 C -0.095 4.095 8 C -0.179 4.179 9 C 0.079 3.921 10 N -0.321 5.321 11 C 0.391 3.609 12 O -0.507 6.507 13 N -0.367 5.367 14 C 0.162 3.838 15 C -0.592 4.592 16 H 0.103 0.897 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.809 3.191 20 H -0.176 1.176 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.193 4.193 24 H 0.127 0.873 25 H 0.116 0.884 26 H 0.138 0.862 27 H 0.262 0.738 28 H 0.147 0.853 29 H 0.179 0.821 30 H 0.175 0.825 31 H 0.264 0.736 32 H 0.244 0.756 33 H 0.005 0.995 34 H 0.008 0.992 35 H 0.078 0.922 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.313 9.519 -17.963 20.782 hybrid contribution 0.585 -1.405 0.643 1.652 sum -3.728 8.115 -17.320 19.486 Atomic orbital electron populations 1.21961 0.86635 1.06763 1.06779 1.21936 0.92770 0.82213 0.73643 1.90709 1.71937 1.32696 1.49988 1.43682 1.04633 1.10885 1.72212 1.17675 0.83836 0.96682 0.96255 1.21172 0.95856 0.99836 1.00692 1.21146 0.92536 0.97739 0.98035 1.21137 1.01488 0.93979 1.01277 1.17489 0.89806 0.90128 0.94640 1.42429 1.28003 1.41438 1.20189 1.16278 0.83031 0.80630 0.81000 1.90876 1.30318 1.63725 1.65807 1.45320 1.32624 1.34437 1.24340 1.18472 0.94243 0.92321 0.78810 1.21619 1.13665 1.17066 1.06821 0.89675 1.26047 0.97068 1.00382 0.96045 1.70144 1.30429 1.42714 1.13595 0.85100 0.78287 0.77386 0.78365 1.17596 1.20593 1.20471 1.20825 0.93553 1.02525 1.02431 0.87325 0.88399 0.86164 0.73783 0.85296 0.82111 0.82469 0.73620 0.75635 0.99510 0.99187 0.92236 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 10.32 71.24 0.74 -1.14 16 2 C 0.50 11.56 7.68 87.66 0.67 12.23 16 3 O -0.57 -18.25 14.77 -3.04 -0.04 -18.30 16 4 N -0.67 -15.46 5.34 -303.56 -1.62 -17.08 16 5 C 0.15 4.35 6.27 38.14 0.24 4.59 16 6 C -0.15 -4.11 8.65 22.41 0.19 -3.92 16 7 C -0.08 -1.65 10.03 22.23 0.22 -1.43 16 8 C -0.16 -3.58 9.96 22.41 0.22 -3.35 16 9 C 0.18 5.22 6.28 38.13 0.24 5.46 16 10 N -0.67 -19.90 5.35 -317.24 -1.70 -21.60 16 11 C 0.69 28.41 8.30 179.06 1.49 29.89 16 12 O -0.63 -31.81 14.03 -4.00 -0.06 -31.87 16 13 N -0.71 -29.81 5.55 -482.31 -2.68 -32.49 16 14 C 0.28 15.44 5.43 85.63 0.46 15.91 16 15 C -0.55 -29.56 9.28 25.60 0.24 -29.32 16 16 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 17 C 0.00 0.23 5.46 84.66 0.46 0.70 16 18 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 19 Si 0.99 41.68 29.54 68.60 2.03 43.70 16 20 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 23 C -0.17 -5.59 8.56 22.51 0.19 -5.40 16 24 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.10 1.13 8.12 -2.38 -0.02 1.11 16 26 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.42 7.27 8.82 -92.71 -0.82 6.45 16 28 H 0.13 3.46 6.41 -2.91 -0.02 3.45 16 29 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 30 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.42 8.82 8.83 -92.71 -0.82 8.00 16 32 H 0.41 13.70 8.34 -92.71 -0.77 12.93 16 33 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 34 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 35 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 36 H 0.11 4.36 6.41 -2.91 -0.02 4.34 16 Total: -1.00 -80.48 316.93 0.32 -80.16 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -1.26 Total: 28.48 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: 5.37 Total: 24.22 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -5.71 Total: -126.39 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -0.10 Total: -50.17 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -80.48 0.32 -80.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217300692.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.669 kcal (2) G-P(sol) polarization free energy of solvation -80.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds