Wall clock time and date at job start Mon Mar 30 2020 01:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21290 * 120.00017 * 2 1 4 4 N 1.34777 * 119.99975 * 180.02562 * 2 1 3 5 5 C 1.40092 * 119.99997 * 175.36324 * 4 2 1 6 6 C 1.38869 * 120.00285 * 35.35930 * 5 4 2 7 7 C 1.38047 * 120.00292 * 180.27474 * 6 5 4 8 8 C 1.38864 * 119.99766 * 359.45434 * 7 6 5 9 9 N 1.40106 * 119.99981 * 180.27482 * 8 7 6 10 10 C 1.34780 * 119.99880 * 324.90173 * 9 8 7 11 11 O 1.21589 * 119.99954 * 4.62038 * 10 9 8 12 12 N 1.34777 * 119.99739 * 184.62089 * 10 9 8 13 13 C 1.46502 * 119.99724 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47179 * 179.97438 * 13 12 10 15 15 H 1.08006 * 119.99950 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00292 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99719 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00074 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46837 * 90.00725 * 18 16 14 20 20 H 1.48497 * 109.47106 * 210.00111 * 18 16 14 21 21 H 1.48503 * 109.47415 * 330.00663 * 18 16 14 22 22 C 1.38860 * 120.00101 * 0.25100 * 8 7 6 23 23 C 1.38051 * 119.99915 * 0.02562 * 22 8 7 24 24 H 1.09004 * 109.47234 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47059 * 299.99363 * 1 2 3 26 26 H 1.08992 * 109.47609 * 59.99568 * 1 2 3 27 27 H 0.97002 * 119.99984 * 355.35912 * 4 2 1 28 28 H 1.08005 * 119.99451 * 0.02562 * 6 5 4 29 29 H 1.08000 * 120.00245 * 179.72334 * 7 6 5 30 30 H 0.96997 * 120.00250 * 144.90100 * 9 8 7 31 31 H 0.96998 * 120.00267 * 359.97438 * 12 10 9 32 32 H 1.08997 * 109.47269 * 299.99872 * 13 12 10 33 33 H 1.08998 * 109.47195 * 60.00158 * 13 12 10 34 34 H 0.97000 * 120.00012 * 179.97438 * 17 16 14 35 35 H 1.08004 * 119.99858 * 180.02562 * 22 8 7 36 36 H 1.08009 * 119.99890 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5783 -1.1692 -0.0986 6 6 4.3184 -0.1623 0.5073 7 6 5.6951 -0.1611 0.4058 8 6 6.3407 -1.1730 -0.2925 9 7 7.7383 -1.1749 -0.3906 10 6 8.4089 -0.0096 -0.4846 11 8 7.8098 1.0451 -0.3999 12 7 9.7435 -0.0133 -0.6725 13 6 10.4723 1.2534 -0.7753 14 6 11.9387 0.9739 -0.9811 15 1 12.2925 -0.0454 -1.0309 16 6 12.8288 2.0194 -1.1070 17 7 12.3980 3.2606 -1.0470 18 14 14.6467 1.6730 -1.3615 19 1 14.9340 1.5799 -2.8154 20 1 15.4481 2.7734 -0.7681 21 1 15.0031 0.3904 -0.7033 22 6 5.6011 -2.1831 -0.8932 23 6 4.2240 -2.1812 -0.7965 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6982 -2.0059 0.0671 28 1 3.8165 0.6220 1.0544 29 1 6.2704 0.6244 0.8733 30 1 8.2234 -2.0149 -0.3908 31 1 10.2215 -0.8547 -0.7398 32 1 10.0890 1.8256 -1.6202 33 1 10.3372 1.8258 0.1424 34 1 13.0242 3.9961 -1.1352 35 1 6.1033 -2.9703 -1.4359 36 1 3.6488 -2.9671 -1.2634 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000244039203.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:13 Heat of formation + Delta-G solvation = -36.377329 kcal Electronic energy + Delta-G solvation = -20168.347404 eV Core-core repulsion = 16845.611279 eV Total energy + Delta-G solvation = -3322.736124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64813 -39.77457 -38.05440 -35.35842 -34.17525 -33.60807 -32.29669 -30.87030 -30.50047 -28.15029 -26.71546 -23.23244 -23.09222 -21.98309 -20.60541 -20.22131 -18.31718 -17.77113 -17.38178 -16.96957 -15.98783 -15.67768 -15.03485 -14.84516 -14.43580 -14.30228 -14.10549 -13.78974 -13.35742 -13.20027 -13.04656 -12.74603 -12.52492 -12.43535 -11.98902 -11.93940 -11.49960 -10.96802 -10.91030 -10.54576 -10.30228 -9.96423 -9.54342 -9.39625 -9.38871 -8.77409 -8.74720 -7.97934 -7.49036 -6.16169 -4.23260 1.32016 1.51427 2.41467 2.90329 3.21321 3.24735 3.31454 3.34326 3.68769 4.05407 4.32030 4.47901 4.78032 4.93244 4.96476 5.03875 5.05367 5.19945 5.39755 5.46880 5.58880 5.66594 5.91297 6.14278 6.32224 6.51616 6.62526 6.79333 7.06947 7.20831 7.27443 7.42721 7.51247 7.53889 7.84136 7.94538 7.99921 8.70285 8.85217 9.22180 9.44003 10.94023 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.044216 B = 0.002881 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.098941 B = 9717.101078 C =10240.399311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.504 3.496 3 O -0.523 6.523 4 N -0.672 5.672 5 C 0.108 3.892 6 C -0.099 4.099 7 C -0.103 4.103 8 C 0.168 3.832 9 N -0.696 5.696 10 C 0.689 3.311 11 O -0.581 6.581 12 N -0.722 5.722 13 C 0.266 3.734 14 C -0.544 4.544 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.138 4.138 23 C -0.125 4.125 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.408 0.592 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.402 0.598 31 H 0.388 0.612 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.266 0.734 35 H 0.127 0.873 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.915 -15.195 2.325 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.292 3.708 3 O -0.398 6.398 4 N -0.318 5.318 5 C 0.014 3.986 6 C -0.119 4.119 7 C -0.125 4.125 8 C 0.072 3.928 9 N -0.344 5.344 10 C 0.389 3.611 11 O -0.458 6.458 12 N -0.374 5.374 13 C 0.145 3.855 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.160 4.160 23 C -0.146 4.146 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.243 0.757 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.237 0.763 31 H 0.221 0.779 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.890 -13.154 2.358 24.798 hybrid contribution 1.240 -1.376 -0.294 1.875 sum -19.649 -14.529 2.064 24.525 Atomic orbital electron populations 1.21841 0.90990 1.04305 1.05635 1.20999 0.90782 0.83379 0.75596 1.90788 1.70237 1.31257 1.47561 1.43599 1.05343 1.09561 1.73291 1.17696 0.82202 0.98200 1.00494 1.21167 0.93160 0.98508 0.99087 1.21380 0.93900 0.99103 0.98070 1.17601 0.82301 0.96419 0.96493 1.42822 1.04693 1.08862 1.78038 1.16183 0.82853 0.83306 0.78709 1.90894 1.67565 1.29751 1.57618 1.45769 1.04396 1.12277 1.74958 1.19051 0.89711 0.79062 0.97706 1.21206 0.91519 0.93321 1.52150 0.91890 1.24952 0.99477 0.94795 0.94810 1.69980 1.35325 0.98408 1.48450 0.86395 0.83980 0.78004 0.78391 1.20463 1.20987 1.19774 1.20633 0.93190 1.00518 1.01664 1.20539 0.94022 0.99586 1.00413 0.90489 0.88499 0.88429 0.75692 0.84467 0.83525 0.76284 0.77944 0.95502 0.95479 0.92395 0.85517 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.39 36.00 0.37 -0.50 16 2 C 0.50 5.23 7.78 -10.99 -0.09 5.14 16 3 O -0.52 -8.24 14.55 5.55 0.08 -8.16 16 4 N -0.67 -6.01 5.34 -9.83 -0.05 -6.06 16 5 C 0.11 1.34 6.30 -83.62 -0.53 0.81 16 6 C -0.10 -1.53 8.69 -39.42 -0.34 -1.87 16 7 C -0.10 -1.78 8.69 -39.42 -0.34 -2.12 16 8 C 0.17 2.61 6.30 -83.61 -0.53 2.08 16 9 N -0.70 -10.89 5.35 -14.18 -0.08 -10.97 16 10 C 0.69 14.40 8.41 -86.91 -0.73 13.67 16 11 O -0.58 -14.59 13.78 5.29 0.07 -14.52 16 12 N -0.72 -15.38 5.55 -66.41 -0.37 -15.75 16 13 C 0.27 7.11 5.43 -5.19 -0.03 7.08 16 14 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 15 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.88 -26.25 13.29 55.43 0.74 -25.52 16 18 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C -0.14 -1.67 9.96 -39.42 -0.39 -2.06 16 23 C -0.12 -1.35 9.96 -39.42 -0.39 -1.74 16 24 H 0.08 0.17 7.92 -51.93 -0.41 -0.24 16 25 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.41 1.93 8.66 -40.82 -0.35 1.58 16 28 H 0.14 2.24 6.24 -52.48 -0.33 1.91 16 29 H 0.15 2.90 6.22 -52.49 -0.33 2.58 16 30 H 0.40 4.72 8.84 -40.82 -0.36 4.36 16 31 H 0.39 6.92 8.34 -40.82 -0.34 6.58 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 35 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 36 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -36.46 316.16 -7.46 -43.92 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.19 Total: 9.34 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -3.41 Total: 7.06 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.24 Total: -58.30 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.15 Total: -22.68 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.46 -7.46 -43.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244039203.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.545 kcal (2) G-P(sol) polarization free energy of solvation -36.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds