Wall clock time and date at job start Mon Mar 30 2020 01:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21290 * 120.00017 * 2 1 4 4 N 1.34777 * 119.99975 * 180.02562 * 2 1 3 5 5 C 1.40092 * 119.99997 * 175.36324 * 4 2 1 6 6 C 1.38869 * 120.00285 * 35.35930 * 5 4 2 7 7 C 1.38047 * 120.00292 * 180.27474 * 6 5 4 8 8 C 1.38864 * 119.99766 * 359.45434 * 7 6 5 9 9 N 1.40106 * 119.99981 * 180.27482 * 8 7 6 10 10 C 1.34780 * 119.99880 * 324.90173 * 9 8 7 11 11 O 1.21589 * 119.99954 * 4.62038 * 10 9 8 12 12 N 1.34777 * 119.99739 * 184.62089 * 10 9 8 13 13 C 1.46502 * 119.99724 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47179 * 179.97438 * 13 12 10 15 15 H 1.08006 * 119.99950 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00292 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99719 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00074 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46837 * 90.00725 * 18 16 14 20 20 H 1.48497 * 109.47106 * 210.00111 * 18 16 14 21 21 H 1.48503 * 109.47415 * 330.00663 * 18 16 14 22 22 C 1.38860 * 120.00101 * 0.25100 * 8 7 6 23 23 C 1.38051 * 119.99915 * 0.02562 * 22 8 7 24 24 H 1.09004 * 109.47234 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47059 * 299.99363 * 1 2 3 26 26 H 1.08992 * 109.47609 * 59.99568 * 1 2 3 27 27 H 0.97002 * 119.99984 * 355.35912 * 4 2 1 28 28 H 1.08005 * 119.99451 * 0.02562 * 6 5 4 29 29 H 1.08000 * 120.00245 * 179.72334 * 7 6 5 30 30 H 0.96997 * 120.00250 * 144.90100 * 9 8 7 31 31 H 0.96998 * 120.00267 * 359.97438 * 12 10 9 32 32 H 1.08997 * 109.47269 * 299.99872 * 13 12 10 33 33 H 1.08998 * 109.47195 * 60.00158 * 13 12 10 34 34 H 0.97000 * 120.00012 * 179.97438 * 17 16 14 35 35 H 1.08004 * 119.99858 * 180.02562 * 22 8 7 36 36 H 1.08009 * 119.99890 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5783 -1.1692 -0.0986 6 6 4.3184 -0.1623 0.5073 7 6 5.6951 -0.1611 0.4058 8 6 6.3407 -1.1730 -0.2925 9 7 7.7383 -1.1749 -0.3906 10 6 8.4089 -0.0096 -0.4846 11 8 7.8098 1.0451 -0.3999 12 7 9.7435 -0.0133 -0.6725 13 6 10.4723 1.2534 -0.7753 14 6 11.9387 0.9739 -0.9811 15 1 12.2925 -0.0454 -1.0309 16 6 12.8288 2.0194 -1.1070 17 7 12.3980 3.2606 -1.0470 18 14 14.6467 1.6730 -1.3615 19 1 14.9340 1.5799 -2.8154 20 1 15.4481 2.7734 -0.7681 21 1 15.0031 0.3904 -0.7033 22 6 5.6011 -2.1831 -0.8932 23 6 4.2240 -2.1812 -0.7965 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6982 -2.0059 0.0671 28 1 3.8165 0.6220 1.0544 29 1 6.2704 0.6244 0.8733 30 1 8.2234 -2.0149 -0.3908 31 1 10.2215 -0.8547 -0.7398 32 1 10.0890 1.8256 -1.6202 33 1 10.3372 1.8258 0.1424 34 1 13.0242 3.9961 -1.1352 35 1 6.1033 -2.9703 -1.4359 36 1 3.6488 -2.9671 -1.2634 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000244039203.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:12 Heat of formation + Delta-G solvation = -65.802394 kcal Electronic energy + Delta-G solvation = -20169.623370 eV Core-core repulsion = 16845.611279 eV Total energy + Delta-G solvation = -3324.012091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.78122 -41.09079 -39.29081 -36.63801 -36.05209 -34.92478 -34.22813 -31.93378 -31.30842 -29.62469 -28.26408 -25.01138 -24.19352 -23.40660 -21.85913 -21.51511 -19.91099 -18.92822 -18.59197 -17.99811 -17.79734 -16.79223 -16.73870 -16.37957 -15.88792 -15.52235 -15.39251 -15.02299 -14.71583 -14.43928 -14.12087 -14.03242 -13.83550 -13.70851 -13.21747 -13.06987 -12.90975 -12.72859 -12.65574 -12.22430 -11.74689 -11.49338 -11.14976 -10.92786 -10.82284 -10.69368 -9.89657 -9.88709 -8.66940 -8.29547 -6.46592 0.21272 0.43639 1.42952 1.46400 1.55820 1.57602 1.72704 2.08502 2.21137 2.38720 2.86892 3.05622 3.40835 3.82394 4.00343 4.05251 4.39716 4.43477 4.52919 4.60173 4.67097 4.81387 5.03179 5.11446 5.12769 5.22975 5.32778 5.35954 5.42764 5.53522 5.59302 5.65243 5.81507 6.09232 6.19290 6.50250 6.64748 7.17570 7.20821 7.24594 7.59830 8.82938 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.044216 B = 0.002881 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.098941 B = 9717.101078 C =10240.399311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.496 3.504 3 O -0.588 6.588 4 N -0.655 5.655 5 C 0.113 3.887 6 C -0.121 4.121 7 C -0.132 4.132 8 C 0.139 3.861 9 N -0.671 5.671 10 C 0.688 3.312 11 O -0.630 6.630 12 N -0.714 5.714 13 C 0.284 3.716 14 C -0.555 4.555 15 H 0.087 0.913 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.989 3.011 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.254 1.254 22 C -0.119 4.119 23 C -0.107 4.107 24 H 0.117 0.883 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.433 0.567 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.425 0.575 31 H 0.408 0.592 32 H -0.014 1.014 33 H -0.013 1.013 34 H 0.269 0.731 35 H 0.167 0.833 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.806 -19.641 1.116 29.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.287 3.713 3 O -0.467 6.467 4 N -0.303 5.303 5 C 0.018 3.982 6 C -0.142 4.142 7 C -0.154 4.154 8 C 0.044 3.956 9 N -0.321 5.321 10 C 0.388 3.612 11 O -0.511 6.511 12 N -0.368 5.368 13 C 0.161 3.839 14 C -0.592 4.592 15 H 0.105 0.895 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.811 3.189 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.177 1.177 22 C -0.140 4.140 23 C -0.128 4.128 24 H 0.136 0.864 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.273 0.727 28 H 0.133 0.867 29 H 0.121 0.879 30 H 0.264 0.736 31 H 0.244 0.756 32 H 0.004 0.996 33 H 0.005 0.995 34 H 0.078 0.922 35 H 0.185 0.815 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -21.841 -17.751 1.160 28.168 hybrid contribution 1.311 -0.026 0.110 1.316 sum -20.530 -17.777 1.270 27.186 Atomic orbital electron populations 1.21878 0.86420 1.07173 1.06130 1.22068 0.92898 0.82560 0.73775 1.90781 1.71891 1.33636 1.50393 1.43560 1.03910 1.10664 1.72144 1.17856 0.83872 0.97256 0.99196 1.21028 0.92718 0.99745 1.00673 1.21116 0.94681 0.99472 1.00097 1.17822 0.81931 0.97652 0.98238 1.42382 1.04991 1.07896 1.76786 1.16340 0.82545 0.84132 0.78154 1.90879 1.68515 1.32302 1.59454 1.45292 1.04680 1.11369 1.75429 1.18463 0.90782 0.80610 0.94026 1.21597 0.91304 0.94580 1.51759 0.89494 1.26112 1.05282 0.94313 0.94058 1.70155 1.37463 0.99821 1.49635 0.85102 0.76696 0.78410 0.78652 1.19546 1.21049 1.17732 1.21054 0.93665 0.99460 0.99795 1.21061 0.93758 0.99451 0.98488 0.86442 0.87849 0.87895 0.72688 0.86717 0.87913 0.73626 0.75566 0.99608 0.99547 0.92222 0.81547 0.80628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 10.39 71.23 0.74 -0.45 16 2 C 0.50 9.76 7.78 87.66 0.68 10.44 16 3 O -0.59 -19.41 14.55 -3.06 -0.04 -19.46 16 4 N -0.65 -10.02 5.34 -303.38 -1.62 -11.64 16 5 C 0.11 2.63 6.30 38.12 0.24 2.87 16 6 C -0.12 -3.98 8.69 22.38 0.19 -3.79 16 7 C -0.13 -4.93 8.69 22.37 0.19 -4.73 16 8 C 0.14 4.28 6.30 38.12 0.24 4.52 16 9 N -0.67 -20.88 5.35 -317.05 -1.70 -22.57 16 10 C 0.69 30.07 8.41 179.05 1.51 31.57 16 11 O -0.63 -34.36 13.78 -4.00 -0.06 -34.42 16 12 N -0.71 -31.32 5.55 -482.30 -2.68 -33.99 16 13 C 0.28 16.09 5.43 85.63 0.46 16.55 16 14 C -0.55 -30.49 9.28 25.60 0.24 -30.25 16 15 H 0.09 4.26 7.60 -2.91 -0.02 4.24 16 16 C 0.00 0.10 5.46 84.66 0.46 0.57 16 17 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 18 Si 0.99 42.65 29.54 68.60 2.03 44.68 16 19 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.25 -10.09 7.11 99.48 0.71 -9.39 16 22 C -0.12 -2.44 9.96 22.37 0.22 -2.22 16 23 C -0.11 -1.86 9.96 22.37 0.22 -1.63 16 24 H 0.12 -0.07 7.92 -2.38 -0.02 -0.08 16 25 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.43 2.13 8.66 -92.71 -0.80 1.33 16 28 H 0.11 4.21 6.24 -2.91 -0.02 4.19 16 29 H 0.10 4.66 6.22 -2.91 -0.02 4.64 16 30 H 0.42 9.12 8.84 -92.71 -0.82 8.30 16 31 H 0.41 14.31 8.34 -92.71 -0.77 13.54 16 32 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 33 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -88.93 316.16 0.38 -88.56 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -1.25 Total: 22.44 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 5.41 Total: 23.44 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -5.71 Total: -125.25 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.10 Total: -53.87 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -88.93 0.38 -88.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244039203.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.754 kcal (2) G-P(sol) polarization free energy of solvation -88.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds