Wall clock time and date at job start Mon Mar 30 2020 01:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34771 * 119.99507 * 2 1 4 4 O 1.21489 * 120.00870 * 359.97438 * 3 2 1 5 5 C 1.48341 * 119.99707 * 179.97438 * 3 2 1 6 6 C 1.39302 * 119.57185 * 179.97438 * 5 3 2 7 7 C 1.38446 * 119.19038 * 180.02562 * 6 5 3 8 8 C 1.39870 * 118.35737 * 0.02562 * 7 6 5 9 9 C 1.48010 * 120.46370 * 180.02562 * 8 7 6 10 10 O 1.21533 * 119.99828 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00182 * 180.27211 * 9 8 7 12 12 C 1.46500 * 120.00429 * 179.71919 * 11 9 8 13 13 H 1.09002 * 109.47175 * 325.00890 * 12 11 9 14 14 C 1.53005 * 109.46585 * 85.00320 * 12 11 9 15 15 C 1.50694 * 109.47534 * 205.00208 * 12 11 9 16 16 H 1.07999 * 120.00128 * 0.02562 * 15 12 11 17 17 C 1.37879 * 120.00053 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99861 * 180.02562 * 17 15 12 19 19 Si 1.86804 * 119.99854 * 0.02562 * 17 15 12 20 20 H 1.48495 * 109.46904 * 90.00242 * 19 17 15 21 21 H 1.48500 * 109.46852 * 210.00146 * 19 17 15 22 22 H 1.48495 * 109.46883 * 329.99702 * 19 17 15 23 23 C 1.39722 * 119.07741 * 0.27316 * 8 7 6 24 24 N 1.31425 * 120.71634 * 359.40832 * 23 8 7 25 25 H 1.08994 * 109.47123 * 60.00144 * 1 2 3 26 26 H 1.08997 * 109.46650 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47464 * 299.99959 * 1 2 3 28 28 H 0.96998 * 119.99693 * 179.97438 * 2 1 3 29 29 H 1.08000 * 120.40358 * 0.02562 * 6 5 3 30 30 H 1.08002 * 120.82348 * 179.97438 * 7 6 5 31 31 H 0.97000 * 120.00112 * 359.72808 * 11 9 8 32 32 H 1.09003 * 109.46937 * 180.02562 * 14 12 11 33 33 H 1.08998 * 109.47131 * 300.00295 * 14 12 11 34 34 H 1.08994 * 109.47191 * 60.00382 * 14 12 11 35 35 H 0.97000 * 119.99653 * 180.02562 * 18 17 15 36 36 H 1.08005 * 119.64740 * 179.70307 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5315 2.2194 -0.0005 5 6 3.6222 1.1673 0.0006 6 6 4.3097 2.3788 0.0000 7 6 5.6941 2.3697 0.0000 8 6 6.3503 1.1344 0.0000 9 6 7.8290 1.0703 0.0006 10 8 8.4817 2.0954 0.0006 11 7 8.4516 -0.1250 -0.0049 12 6 9.9152 -0.1886 -0.0106 13 1 10.3126 0.6384 -0.5992 14 6 10.4355 -0.0890 1.4249 15 6 10.3590 -1.4951 -0.6162 16 1 9.6244 -2.2069 -0.9628 17 6 11.7030 -1.7820 -0.7280 18 7 12.0903 -2.9220 -1.2570 19 14 12.9737 -0.5512 -0.1280 20 1 13.2888 -0.8204 1.2980 21 1 14.2098 -0.6799 -0.9409 22 1 12.4327 0.8250 -0.2643 23 6 5.5904 -0.0381 -0.0058 24 7 4.2772 0.0130 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9500 -0.8401 0.0004 29 1 3.7692 3.3139 -0.0004 30 1 6.2536 3.2935 -0.0008 31 1 7.9307 -0.9433 -0.0053 32 1 11.5245 -0.1359 1.4207 33 1 10.1145 0.8560 1.8629 34 1 10.0382 -0.9159 2.0135 35 1 13.0358 -3.1239 -1.3353 36 1 6.0876 -0.9969 -0.0107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264194654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:36 Heat of formation + Delta-G solvation = -30.263923 kcal Electronic energy + Delta-G solvation = -20468.588677 eV Core-core repulsion = 17146.117649 eV Total energy + Delta-G solvation = -3322.471027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95460 -39.58888 -38.48838 -35.24018 -34.97446 -32.82028 -32.67460 -31.80682 -29.83444 -27.57046 -25.33020 -24.82548 -23.78469 -21.84205 -20.88660 -19.92827 -18.78487 -17.99990 -17.06820 -16.32358 -15.83252 -15.70235 -15.35344 -15.22447 -14.76851 -14.65609 -14.22826 -13.79808 -13.44218 -13.21173 -13.07947 -12.91276 -12.74739 -12.60218 -12.27015 -11.90512 -11.40010 -10.89572 -10.65378 -10.26611 -10.14623 -10.10515 -9.74954 -9.56302 -9.37739 -9.34759 -9.30586 -8.84253 -8.33444 -6.27627 -4.31298 0.13717 0.97413 2.29749 2.81243 3.18188 3.20638 3.31348 3.34544 3.59245 3.81883 3.82594 4.25531 4.49956 4.62311 4.70962 4.89639 4.96596 5.06283 5.07105 5.16833 5.41141 5.44303 5.75846 5.88711 6.03880 6.20512 6.25199 6.28195 6.45873 6.75335 7.04504 7.06389 7.12891 7.39651 7.43978 7.85791 7.98948 8.36592 8.60804 8.72983 9.32083 10.84318 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.037593 B = 0.003442 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.633247 B = 8133.341199 C = 8686.865513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.716 5.716 3 C 0.573 3.427 4 O -0.532 6.532 5 C 0.085 3.915 6 C -0.117 4.117 7 C -0.027 4.027 8 C -0.148 4.148 9 C 0.547 3.453 10 O -0.543 6.543 11 N -0.689 5.689 12 C 0.236 3.764 13 H 0.052 0.948 14 C -0.163 4.163 15 C -0.539 4.539 16 H 0.082 0.918 17 C 0.080 3.920 18 N -0.890 5.890 19 Si 0.885 3.115 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.261 1.261 23 C 0.131 3.869 24 N -0.463 5.463 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.415 0.585 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.395 0.605 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.055 0.945 35 H 0.268 0.732 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.519 4.497 3.585 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.368 5.368 3 C 0.358 3.642 4 O -0.408 6.408 5 C -0.053 4.053 6 C -0.138 4.138 7 C -0.053 4.053 8 C -0.154 4.154 9 C 0.331 3.669 10 O -0.422 6.422 11 N -0.337 5.337 12 C 0.133 3.867 13 H 0.070 0.930 14 C -0.221 4.221 15 C -0.577 4.577 16 H 0.099 0.901 17 C -0.124 4.124 18 N -0.526 5.526 19 Si 0.715 3.285 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.186 1.186 23 C -0.029 4.029 24 N -0.174 5.174 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.250 0.750 29 H 0.171 0.829 30 H 0.174 0.826 31 H 0.230 0.770 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -18.843 5.059 3.526 19.826 hybrid contribution 1.293 0.335 0.316 1.372 sum -17.550 5.394 3.841 18.758 Atomic orbital electron populations 1.21613 0.79067 1.02613 1.02495 1.45636 1.07813 1.09165 1.74161 1.17937 0.85780 0.84049 0.76456 1.90783 1.68862 1.31321 1.49836 1.21194 0.94061 0.89990 1.00088 1.22091 0.94210 0.99466 0.98034 1.21813 0.93441 0.98621 0.91472 1.21515 0.95939 0.95243 1.02662 1.18029 0.85960 0.84872 0.78067 1.90749 1.66477 1.34087 1.50936 1.46180 1.09735 1.06578 1.71233 1.19191 0.75070 0.99193 0.93207 0.93046 1.22464 1.00267 0.99864 0.99474 1.21000 0.93520 1.01374 1.41765 0.90050 1.24821 0.98237 0.95144 0.94222 1.69860 1.16579 1.22605 1.43593 0.86881 0.80802 0.82601 0.78262 1.20223 1.22075 1.18618 1.23045 0.88588 0.98298 0.93003 1.67506 1.10341 1.28137 1.11415 0.91956 0.90275 0.91982 0.74952 0.82886 0.82628 0.76981 0.93238 0.94438 0.92633 0.92170 0.81188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.70 59.85 0.64 1.22 16 2 N -0.72 -6.47 5.70 -67.88 -0.39 -6.85 16 3 C 0.57 6.88 7.82 -12.10 -0.09 6.78 16 4 O -0.53 -7.68 16.31 5.38 0.09 -7.60 16 5 C 0.08 1.03 6.75 -82.93 -0.56 0.47 16 6 C -0.12 -1.37 9.62 -39.11 -0.38 -1.74 16 7 C -0.03 -0.34 9.71 -38.89 -0.38 -0.72 16 8 C -0.15 -2.08 5.90 -104.73 -0.62 -2.70 16 9 C 0.55 9.78 7.75 -12.26 -0.09 9.68 16 10 O -0.54 -11.54 16.07 5.34 0.09 -11.45 16 11 N -0.69 -12.78 5.02 -55.83 -0.28 -13.06 16 12 C 0.24 5.37 2.15 -69.08 -0.15 5.22 16 13 H 0.05 1.29 6.64 -51.93 -0.34 0.95 16 14 C -0.16 -3.47 8.96 37.16 0.33 -3.14 16 15 C -0.54 -13.96 9.31 -34.44 -0.32 -14.28 16 16 H 0.08 2.20 7.98 -52.49 -0.42 1.78 16 17 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 18 N -0.89 -25.65 13.96 55.43 0.77 -24.87 16 19 Si 0.89 21.10 24.37 -169.99 -4.14 16.95 16 20 H -0.28 -6.35 6.87 56.52 0.39 -5.96 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 23 C 0.13 1.60 10.71 -17.17 -0.18 1.41 16 24 N -0.46 -5.48 9.52 -9.48 -0.09 -5.57 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.41 3.19 8.15 -40.82 -0.33 2.86 16 29 H 0.15 1.58 7.63 -52.49 -0.40 1.18 16 30 H 0.16 1.85 7.73 -52.49 -0.41 1.44 16 31 H 0.40 6.22 6.60 -40.82 -0.27 5.95 16 32 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.17 1.73 6.42 -52.48 -0.34 1.39 16 LS Contribution 309.71 15.07 4.67 4.67 Total: -1.00 -32.38 309.71 -5.16 -37.54 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.97 Total: 5.96 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.90 Total: 4.28 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.02 Total: -50.36 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.17 Total: -19.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.14 Total: 16.95 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.38 -5.16 -37.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264194654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.274 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds