Wall clock time and date at job start Mon Mar 30 2020 01:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34771 * 119.99507 * 2 1 4 4 O 1.21489 * 120.00870 * 359.97438 * 3 2 1 5 5 C 1.48341 * 119.99707 * 179.97438 * 3 2 1 6 6 C 1.39302 * 119.57185 * 179.97438 * 5 3 2 7 7 C 1.38446 * 119.19038 * 180.02562 * 6 5 3 8 8 C 1.39870 * 118.35737 * 0.02562 * 7 6 5 9 9 C 1.48010 * 120.46370 * 180.02562 * 8 7 6 10 10 O 1.21533 * 119.99828 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00182 * 180.27211 * 9 8 7 12 12 C 1.46500 * 120.00429 * 179.71919 * 11 9 8 13 13 H 1.09002 * 109.47175 * 325.00890 * 12 11 9 14 14 C 1.53005 * 109.46585 * 85.00320 * 12 11 9 15 15 C 1.50694 * 109.47534 * 205.00208 * 12 11 9 16 16 H 1.07999 * 120.00128 * 0.02562 * 15 12 11 17 17 C 1.37879 * 120.00053 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99861 * 180.02562 * 17 15 12 19 19 Si 1.86804 * 119.99854 * 0.02562 * 17 15 12 20 20 H 1.48495 * 109.46904 * 90.00242 * 19 17 15 21 21 H 1.48500 * 109.46852 * 210.00146 * 19 17 15 22 22 H 1.48495 * 109.46883 * 329.99702 * 19 17 15 23 23 C 1.39722 * 119.07741 * 0.27316 * 8 7 6 24 24 N 1.31425 * 120.71634 * 359.40832 * 23 8 7 25 25 H 1.08994 * 109.47123 * 60.00144 * 1 2 3 26 26 H 1.08997 * 109.46650 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47464 * 299.99959 * 1 2 3 28 28 H 0.96998 * 119.99693 * 179.97438 * 2 1 3 29 29 H 1.08000 * 120.40358 * 0.02562 * 6 5 3 30 30 H 1.08002 * 120.82348 * 179.97438 * 7 6 5 31 31 H 0.97000 * 120.00112 * 359.72808 * 11 9 8 32 32 H 1.09003 * 109.46937 * 180.02562 * 14 12 11 33 33 H 1.08998 * 109.47131 * 300.00295 * 14 12 11 34 34 H 1.08994 * 109.47191 * 60.00382 * 14 12 11 35 35 H 0.97000 * 119.99653 * 180.02562 * 18 17 15 36 36 H 1.08005 * 119.64740 * 179.70307 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5315 2.2194 -0.0005 5 6 3.6222 1.1673 0.0006 6 6 4.3097 2.3788 0.0000 7 6 5.6941 2.3697 0.0000 8 6 6.3503 1.1344 0.0000 9 6 7.8290 1.0703 0.0006 10 8 8.4817 2.0954 0.0006 11 7 8.4516 -0.1250 -0.0049 12 6 9.9152 -0.1886 -0.0106 13 1 10.3126 0.6384 -0.5992 14 6 10.4355 -0.0890 1.4249 15 6 10.3590 -1.4951 -0.6162 16 1 9.6244 -2.2069 -0.9628 17 6 11.7030 -1.7820 -0.7280 18 7 12.0903 -2.9220 -1.2570 19 14 12.9737 -0.5512 -0.1280 20 1 13.2888 -0.8204 1.2980 21 1 14.2098 -0.6799 -0.9409 22 1 12.4327 0.8250 -0.2643 23 6 5.5904 -0.0381 -0.0058 24 7 4.2772 0.0130 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9500 -0.8401 0.0004 29 1 3.7692 3.3139 -0.0004 30 1 6.2536 3.2935 -0.0008 31 1 7.9307 -0.9433 -0.0053 32 1 11.5245 -0.1359 1.4207 33 1 10.1145 0.8560 1.8629 34 1 10.0382 -0.9159 2.0135 35 1 13.0358 -3.1239 -1.3353 36 1 6.0876 -0.9969 -0.0107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264194654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:36 Heat of formation + Delta-G solvation = -55.935651 kcal Electronic energy + Delta-G solvation = -20469.701886 eV Core-core repulsion = 17146.117649 eV Total energy + Delta-G solvation = -3323.584237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.98821 -40.77349 -39.67905 -36.94353 -35.80059 -34.53965 -33.78101 -33.10410 -31.39160 -28.37638 -27.22244 -25.90112 -24.77072 -23.30367 -21.95694 -21.42034 -19.84833 -19.36973 -18.16879 -18.06804 -17.21720 -16.64859 -16.58452 -16.21104 -16.06647 -16.00112 -15.48245 -15.01099 -14.80258 -14.66603 -14.27973 -14.14617 -13.87950 -13.79810 -13.58797 -13.21934 -13.08820 -12.77643 -12.13883 -11.67530 -11.60814 -11.29434 -11.23165 -11.14751 -10.86699 -10.68121 -10.53428 -10.17433 -9.94876 -8.36941 -6.43231 -0.90371 0.01360 1.26183 1.29798 1.38246 1.46659 1.99207 2.00009 2.20187 2.27578 2.73498 2.90055 2.99758 3.56550 3.61543 3.74129 3.82341 3.98339 4.44164 4.44384 4.52972 4.55379 4.63066 4.69492 4.79586 4.88593 4.94780 5.01326 5.24698 5.30655 5.31951 5.40563 5.55601 6.11191 6.21954 6.53527 6.57855 6.73241 7.01864 7.14540 7.30083 8.77959 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.037593 B = 0.003442 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.633247 B = 8133.341199 C = 8686.865513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.704 5.704 3 C 0.568 3.432 4 O -0.561 6.561 5 C 0.085 3.915 6 C -0.114 4.114 7 C -0.021 4.021 8 C -0.162 4.162 9 C 0.552 3.448 10 O -0.580 6.580 11 N -0.688 5.688 12 C 0.241 3.759 13 H 0.028 0.972 14 C -0.158 4.158 15 C -0.534 4.534 16 H 0.062 0.938 17 C 0.031 3.969 18 N -0.932 5.932 19 Si 0.936 3.064 20 H -0.260 1.260 21 H -0.295 1.295 22 H -0.260 1.260 23 C 0.140 3.860 24 N -0.458 5.458 25 H 0.058 0.942 26 H 0.112 0.888 27 H 0.059 0.941 28 H 0.422 0.578 29 H 0.167 0.833 30 H 0.161 0.839 31 H 0.409 0.591 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.270 0.730 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.912 4.643 4.428 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.355 5.355 3 C 0.353 3.647 4 O -0.440 6.440 5 C -0.053 4.053 6 C -0.135 4.135 7 C -0.048 4.048 8 C -0.168 4.168 9 C 0.338 3.662 10 O -0.461 6.461 11 N -0.337 5.337 12 C 0.137 3.863 13 H 0.045 0.955 14 C -0.216 4.216 15 C -0.572 4.572 16 H 0.080 0.920 17 C -0.169 4.169 18 N -0.571 5.571 19 Si 0.764 3.236 20 H -0.185 1.185 21 H -0.222 1.222 22 H -0.185 1.185 23 C -0.020 4.020 24 N -0.170 5.170 25 H 0.077 0.923 26 H 0.131 0.869 27 H 0.077 0.923 28 H 0.259 0.741 29 H 0.184 0.816 30 H 0.178 0.822 31 H 0.246 0.754 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -20.282 5.162 4.381 21.383 hybrid contribution 1.560 0.254 0.012 1.581 sum -18.722 5.416 4.393 19.979 Atomic orbital electron populations 1.21830 0.77465 1.04783 1.02152 1.45694 1.08921 1.08593 1.72293 1.17971 0.85677 0.84472 0.76610 1.90772 1.69241 1.32390 1.51593 1.21422 0.94495 0.90251 0.99147 1.22202 0.93688 1.00052 0.97558 1.21899 0.93839 0.98375 0.90641 1.21180 0.93430 0.96646 1.05505 1.18433 0.87415 0.83783 0.76568 1.90726 1.67740 1.35153 1.52497 1.45950 1.08267 1.07789 1.71685 1.18847 0.77518 0.96335 0.93608 0.95450 1.22369 0.99741 1.01024 0.98442 1.21235 0.93130 1.02037 1.40815 0.92016 1.25524 1.00262 0.96516 0.94615 1.69967 1.17089 1.24475 1.45554 0.86048 0.78475 0.80553 0.78569 1.18530 1.22238 1.18488 1.23278 0.88599 0.98401 0.91766 1.67578 1.09935 1.27902 1.11542 0.92332 0.86912 0.92266 0.74060 0.81557 0.82171 0.75380 0.93975 0.93359 0.91318 0.92046 0.79363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.70 127.77 1.37 2.26 16 2 N -0.70 -11.14 5.70 -486.99 -2.78 -13.92 16 3 C 0.57 12.65 7.82 86.93 0.68 13.33 16 4 O -0.56 -15.51 16.31 -3.68 -0.06 -15.57 16 5 C 0.08 1.89 6.75 41.96 0.28 2.18 16 6 C -0.11 -2.47 9.62 22.58 0.22 -2.25 16 7 C -0.02 -0.50 9.71 22.71 0.22 -0.28 16 8 C -0.16 -4.31 5.90 -19.93 -0.12 -4.43 16 9 C 0.55 19.21 7.75 86.84 0.67 19.89 16 10 O -0.58 -24.35 16.07 -3.82 -0.06 -24.41 16 11 N -0.69 -24.84 5.02 -448.82 -2.25 -27.09 16 12 C 0.24 10.81 2.15 44.25 0.10 10.91 16 13 H 0.03 1.38 6.64 -2.39 -0.02 1.36 16 14 C -0.16 -6.47 8.96 71.98 0.65 -5.83 16 15 C -0.53 -27.70 9.31 25.60 0.24 -27.46 16 16 H 0.06 3.37 7.98 -2.91 -0.02 3.35 16 17 C 0.03 1.68 5.45 84.66 0.46 2.14 16 18 N -0.93 -54.27 13.96 21.45 0.30 -53.97 16 19 Si 0.94 43.17 24.37 68.60 1.67 44.84 16 20 H -0.26 -11.24 6.87 99.48 0.68 -10.55 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 22 H -0.26 -11.86 6.53 99.48 0.65 -11.21 16 23 C 0.14 3.12 10.71 85.11 0.91 4.03 16 24 N -0.46 -9.83 9.52 -183.89 -1.75 -11.58 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.42 5.39 8.15 -92.71 -0.76 4.63 16 29 H 0.17 3.14 7.63 -2.91 -0.02 3.12 16 30 H 0.16 3.63 7.73 -2.91 -0.02 3.61 16 31 H 0.41 12.35 6.60 -92.71 -0.61 11.74 16 32 H 0.04 1.78 3.27 -2.39 -0.01 1.77 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.19 3.38 6.42 -2.91 -0.02 3.36 16 Total: -1.00 -69.00 309.71 0.44 -68.56 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -0.31 Total: 18.66 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 5.67 Total: 14.49 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -6.48 Total: -106.56 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.12 Total: -39.99 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.67 Total: 44.84 kcal Total: -69.00 0.44 -68.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264194654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.627 kcal (2) G-P(sol) polarization free energy of solvation -68.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds