Wall clock time and date at job start Mon Mar 30 2020 02:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00039 * 2 1 4 4 C 1.34776 * 119.99975 * 180.02562 * 2 1 3 5 5 O 1.21588 * 119.99645 * 5.39972 * 4 2 1 6 6 N 1.34772 * 120.00070 * 185.39616 * 4 2 1 7 7 N 1.40098 * 120.00031 * 184.88806 * 6 4 2 8 8 C 1.34779 * 120.00056 * 174.92606 * 7 6 4 9 9 O 1.21583 * 119.99985 * 0.02562 * 8 7 6 10 10 C 1.47641 * 119.99801 * 180.02562 * 8 7 6 11 11 C 1.40006 * 119.90111 * 0.24677 * 10 8 7 12 12 C 1.36317 * 120.10942 * 180.25719 * 11 10 8 13 13 C 1.40886 * 119.88988 * 359.47718 * 12 11 10 14 14 C 1.41109 * 120.09917 * 180.29819 * 13 12 11 15 15 H 1.07993 * 120.00315 * 343.86446 * 14 13 12 16 16 C 1.40232 * 119.99506 * 163.86209 * 14 13 12 17 17 N 1.30638 * 120.00568 * 329.54075 * 16 14 13 18 18 Si 1.86808 * 119.99492 * 149.53660 * 16 14 13 19 19 H 1.48497 * 109.46930 * 95.00109 * 18 16 14 20 20 H 1.48507 * 109.46844 * 214.99911 * 18 16 14 21 21 H 1.48491 * 109.47079 * 334.99699 * 18 16 14 22 22 C 1.40882 * 119.79523 * 0.27319 * 13 12 11 23 23 C 1.36322 * 119.89027 * 0.02562 * 22 13 12 24 24 H 1.09002 * 109.47233 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46925 * 300.00198 * 1 2 3 26 26 H 1.08997 * 109.47191 * 59.99726 * 1 2 3 27 27 H 1.09002 * 109.47047 * 272.46903 * 3 2 1 28 28 H 1.09006 * 109.47238 * 32.46967 * 3 2 1 29 29 H 1.09003 * 109.47268 * 152.47108 * 3 2 1 30 30 H 0.97003 * 119.99939 * 4.89348 * 6 4 2 31 31 H 0.97001 * 120.00383 * 354.92996 * 7 6 4 32 32 H 1.08004 * 119.94809 * 0.03291 * 11 10 8 33 33 H 1.08005 * 120.05271 * 179.74807 * 12 11 10 34 34 H 0.97001 * 120.00793 * 180.02562 * 17 16 14 35 35 H 1.07999 * 120.05469 * 180.02562 * 22 13 12 36 36 H 1.08004 * 119.94455 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5349 -2.2178 -0.1001 6 7 3.4821 -1.1699 0.1092 7 7 4.1910 -2.3738 0.0060 8 6 5.5388 -2.3651 0.0131 9 8 6.1393 -1.3124 0.1097 10 6 6.2858 -3.6339 -0.0962 11 6 5.5921 -4.8444 -0.2125 12 6 6.2774 -6.0188 -0.3085 13 6 7.6863 -6.0122 -0.3017 14 6 8.4002 -7.2247 -0.4071 15 1 7.8974 -8.1644 -0.2326 16 6 9.7627 -7.2095 -0.7386 17 7 10.2396 -6.2599 -1.4985 18 14 10.8958 -8.5473 -0.0935 19 1 11.0236 -9.6210 -1.1113 20 1 12.2346 -7.9692 0.1870 21 1 10.3300 -9.1149 1.1565 22 6 8.3800 -4.7911 -0.1897 23 6 7.6858 -3.6222 -0.0881 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 2.3408 1.6055 -1.0267 28 1 1.6283 2.0169 0.5517 29 1 3.1684 1.1277 0.4750 30 1 3.9581 -0.3381 0.2598 31 1 3.7119 -3.2138 -0.0707 32 1 4.5121 -4.8481 -0.2225 33 1 5.7413 -6.9525 -0.3941 34 1 11.1820 -6.2495 -1.7281 35 1 9.4599 -4.7811 -0.1845 36 1 8.2168 -2.6856 -0.0027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270238559.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:09 Heat of formation + Delta-G solvation = -23.820406 kcal Electronic energy + Delta-G solvation = -20436.488059 eV Core-core repulsion = 17114.296443 eV Total energy + Delta-G solvation = -3322.191615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68121 -40.48317 -38.93681 -36.79614 -36.36264 -35.81163 -32.90508 -31.77984 -31.03780 -28.82532 -27.80895 -26.59686 -23.95617 -22.84472 -22.29054 -21.33177 -19.52654 -19.35014 -18.83110 -17.90116 -17.17648 -17.03972 -16.67144 -15.87471 -15.79315 -15.77757 -15.17974 -14.95961 -14.59827 -14.51086 -14.01253 -13.82327 -13.46335 -13.36210 -13.19606 -12.95510 -12.88846 -12.72425 -12.41142 -12.33467 -11.88625 -11.60940 -11.39804 -11.01031 -10.98415 -9.96603 -9.66516 -9.57793 -9.23229 -8.94041 -6.47909 0.39260 0.63488 1.16398 1.34334 1.41904 1.55964 1.79473 2.07157 2.14685 2.28542 2.67817 3.30154 3.67220 4.08739 4.18300 4.29040 4.38869 4.41300 4.50324 4.74062 4.82768 4.93462 4.95624 4.98829 5.14929 5.24077 5.25264 5.48847 5.54860 5.68113 5.77901 5.89803 5.99071 6.15457 6.28946 6.50452 6.71514 6.72144 6.86660 7.04374 7.49874 8.01127 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.050167 B = 0.003161 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.999148 B = 8856.257298 C = 9302.197766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.627 5.627 3 C 0.071 3.929 4 C 0.701 3.299 5 O -0.627 6.627 6 N -0.536 5.536 7 N -0.516 5.516 8 C 0.579 3.421 9 O -0.599 6.599 10 C -0.302 4.302 11 C -0.034 4.034 12 C -0.252 4.252 13 C 0.099 3.901 14 C -0.459 4.459 15 H 0.096 0.904 16 C 0.042 3.958 17 N -0.775 5.775 18 Si 0.984 3.016 19 H -0.255 1.255 20 H -0.263 1.263 21 H -0.254 1.254 22 C -0.218 4.218 23 C -0.034 4.034 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.431 0.569 31 H 0.431 0.569 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.302 0.698 35 H 0.107 0.893 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.613 9.177 2.477 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.365 5.365 3 C -0.071 4.071 4 C 0.402 3.598 5 O -0.508 6.508 6 N -0.289 5.289 7 N -0.265 5.265 8 C 0.374 3.626 9 O -0.482 6.482 10 C -0.308 4.308 11 C -0.053 4.053 12 C -0.271 4.271 13 C 0.096 3.904 14 C -0.484 4.484 15 H 0.114 0.886 16 C -0.181 4.181 17 N -0.396 5.396 18 Si 0.803 3.197 19 H -0.180 1.180 20 H -0.188 1.188 21 H -0.178 1.178 22 C -0.237 4.237 23 C -0.053 4.053 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.276 0.724 31 H 0.275 0.725 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.481 9.322 2.307 14.215 hybrid contribution 0.683 -0.355 0.035 0.771 sum -9.798 8.967 2.342 13.487 Atomic orbital electron populations 1.21807 0.75648 1.03758 1.03449 1.46920 1.08081 1.04083 1.77409 1.22045 0.96966 0.84508 1.03581 1.15788 0.80065 0.85353 0.78622 1.90892 1.67936 1.31749 1.60182 1.43729 1.03624 1.02956 1.78558 1.44665 1.03680 1.00928 1.77239 1.18536 0.79308 0.89815 0.74953 1.90613 1.68829 1.33715 1.55055 1.18672 0.93236 0.90740 1.28135 1.20638 0.98249 0.91725 0.94725 1.20811 0.93726 0.97418 1.15174 1.18087 0.92424 0.93408 0.86486 1.20239 0.94966 0.94715 1.38486 0.88635 1.27097 1.00355 0.99210 0.91434 1.69823 1.17734 1.31502 1.20540 0.85154 0.76761 0.77639 0.80141 1.17952 1.18753 1.17754 1.20878 0.99179 0.92278 1.11382 1.20452 0.92775 0.97087 0.95033 0.91485 0.89605 0.90021 0.91086 0.87226 0.91704 0.72399 0.72508 0.86013 0.86793 0.88667 0.87514 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.42 10.69 127.77 1.37 2.79 16 2 N -0.63 -12.61 3.27 -890.17 -2.91 -15.53 16 3 C 0.07 0.89 10.46 127.77 1.34 2.22 16 4 C 0.70 20.90 8.38 179.06 1.50 22.40 16 5 O -0.63 -22.98 15.53 -3.99 -0.06 -23.04 16 6 N -0.54 -16.74 6.14 -184.75 -1.13 -17.87 16 7 N -0.52 -18.89 6.21 -175.73 -1.09 -19.98 16 8 C 0.58 24.81 7.88 86.73 0.68 25.49 16 9 O -0.60 -27.79 16.17 -3.98 -0.06 -27.86 16 10 C -0.30 -13.92 5.89 -19.93 -0.12 -14.03 16 11 C -0.03 -1.48 9.47 22.25 0.21 -1.27 16 12 C -0.25 -11.69 9.73 22.47 0.22 -11.47 16 13 C 0.10 5.08 5.64 -21.28 -0.12 4.96 16 14 C -0.46 -22.49 8.99 23.46 0.21 -22.28 16 15 H 0.10 4.39 8.00 -2.91 -0.02 4.37 16 16 C 0.04 1.92 4.91 85.35 0.42 2.34 16 17 N -0.77 -36.89 11.23 21.87 0.25 -36.64 16 18 Si 0.98 33.70 29.65 68.60 2.03 35.73 16 19 H -0.26 -8.28 7.11 99.48 0.71 -7.58 16 20 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 21 H -0.25 -8.64 7.11 99.48 0.71 -7.93 16 22 C -0.22 -11.29 8.75 22.47 0.20 -11.09 16 23 C -0.03 -1.68 9.52 22.25 0.21 -1.47 16 24 H 0.07 1.34 6.91 -2.39 -0.02 1.33 16 25 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.11 0.69 8.09 -2.38 -0.02 0.67 16 29 H 0.06 0.88 6.00 -2.39 -0.01 0.86 16 30 H 0.43 12.10 5.61 -213.32 -1.20 10.90 16 31 H 0.43 15.27 6.01 -213.32 -1.28 13.99 16 32 H 0.12 4.38 6.37 -2.91 -0.02 4.36 16 33 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.30 12.65 8.29 -92.71 -0.77 11.89 16 35 H 0.11 5.64 6.03 -2.91 -0.02 5.62 16 36 H 0.10 4.80 7.63 -2.91 -0.02 4.78 16 Total: -1.00 -65.85 311.28 1.79 -64.06 By element: Atomic # 1 Polarization: 43.88 SS G_CDS: -1.34 Total: 42.54 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 6.12 Total: -1.40 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -4.89 Total: -90.02 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -0.13 Total: -50.90 kcal Atomic # 14 Polarization: 33.70 SS G_CDS: 2.03 Total: 35.73 kcal Total: -65.85 1.79 -64.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270238559.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.240 kcal (2) G-P(sol) polarization free energy of solvation -65.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds