Wall clock time and date at job start Mon Mar 30 2020 01:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.47025 * 2 1 4 4 C 1.34757 * 116.99758 * 179.97438 * 3 2 1 5 5 O 1.21500 * 120.00286 * 0.02562 * 4 3 2 6 6 C 1.47382 * 119.99751 * 179.97438 * 4 3 2 7 7 C 1.40739 * 126.44568 * 0.02562 * 6 4 3 8 8 N 1.30627 * 108.49397 * 179.97438 * 7 6 4 9 9 N 1.39935 * 109.23941 * 0.02562 * 8 7 6 10 10 C 1.46505 * 125.88793 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46903 * 90.02534 * 10 9 8 12 12 C 1.52993 * 109.47312 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47697 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99586 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00416 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00180 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00210 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46868 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47067 * 120.00232 * 17 15 13 20 20 H 1.48500 * 109.47175 * 240.00441 * 17 15 13 21 21 C 1.35873 * 108.22023 * 0.02562 * 9 8 7 22 22 C 1.43202 * 126.53538 * 180.02562 * 21 9 8 23 23 N 5.94251 * 164.26683 * 0.02562 * 2 1 3 24 24 H 1.08999 * 109.47500 * 300.00229 * 1 2 3 25 25 H 1.09000 * 109.47220 * 59.99921 * 1 2 3 26 26 H 1.08999 * 109.47106 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46915 * 240.00221 * 2 1 3 28 28 H 1.09000 * 109.47220 * 120.00079 * 2 1 3 29 29 H 1.08007 * 125.75272 * 0.04488 * 7 6 4 30 30 H 1.09000 * 109.47039 * 210.02454 * 10 9 8 31 31 H 1.08999 * 109.47219 * 330.02900 * 10 9 8 32 32 H 1.08998 * 109.47096 * 300.00347 * 11 10 9 33 33 H 1.09011 * 109.47026 * 59.99804 * 11 10 9 34 34 H 1.09005 * 109.46974 * 300.00668 * 12 11 10 35 35 H 1.08999 * 109.47122 * 59.99671 * 12 11 10 36 36 H 0.96995 * 120.00261 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 0.0005 5 8 4.0901 0.5820 0.0005 6 6 3.9132 2.9075 0.0000 7 6 3.1866 4.1128 -0.0006 8 7 4.0336 5.1072 -0.0004 9 7 5.3384 4.6016 -0.0003 10 6 6.5681 5.3980 -0.0006 11 6 6.9965 5.6751 1.4418 12 6 8.2810 6.5063 1.4416 13 6 8.7034 6.7788 2.8623 14 1 8.1143 6.3976 3.6833 15 6 9.8419 7.5146 3.1140 16 7 10.5590 7.9792 2.1142 17 14 10.3650 7.8529 4.8750 18 1 9.3954 7.2256 5.8086 19 1 11.7161 7.2826 5.1083 20 1 10.3996 9.3191 5.1081 21 6 5.2682 3.2447 -0.0010 22 6 6.3732 2.3338 -0.0006 23 7 7.2499 1.6114 0.0007 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1101 4.2007 0.0000 30 1 7.3567 4.8485 -0.5147 31 1 6.3891 6.3426 -0.5143 32 1 6.2079 6.2245 1.9559 33 1 7.1755 4.7305 1.9556 34 1 9.0694 5.9564 0.9275 35 1 8.1025 7.4508 0.9277 36 1 11.3597 8.4972 2.2913 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272423178.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:42 Heat of formation + Delta-G solvation = 6.993222 kcal Electronic energy + Delta-G solvation = -20164.211895 eV Core-core repulsion = 16843.356458 eV Total energy + Delta-G solvation = -3320.855436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.72881 -40.13922 -36.84329 -36.51421 -35.34336 -33.10100 -32.06196 -31.25550 -30.72913 -27.34151 -25.11057 -23.60390 -23.09874 -22.29761 -21.08324 -20.57562 -18.65546 -17.73804 -16.76731 -16.50020 -16.40015 -15.62589 -15.19374 -14.71074 -14.48077 -14.20241 -14.03207 -13.83619 -13.39756 -13.35535 -13.08636 -12.78087 -12.57188 -12.25935 -12.13381 -11.96023 -11.82783 -11.30793 -11.10520 -10.95994 -10.75668 -10.69154 -10.55375 -10.03162 -9.92648 -9.57027 -9.30190 -8.99037 -8.47249 -6.11895 -4.15132 0.48280 1.72218 1.79782 2.35293 2.71035 2.73406 3.25672 3.26844 3.33585 3.37586 3.46948 4.21195 4.37657 4.53932 4.65177 4.69962 4.85046 4.98805 5.06649 5.23904 5.26210 5.31087 5.47494 5.47873 5.56330 5.66744 5.98435 6.15418 6.21868 6.26220 6.56749 6.75144 7.18010 7.21552 7.45996 7.55283 7.63768 7.85055 8.25056 8.90509 9.50141 10.99377 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029503 B = 0.003159 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.839056 B = 8860.186080 C = 8969.623291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.351 6.351 4 C 0.544 3.456 5 O -0.511 6.511 6 C -0.232 4.232 7 C 0.097 3.903 8 N -0.259 5.259 9 N -0.309 5.309 10 C 0.113 3.887 11 C -0.125 4.125 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.224 3.776 22 C 0.265 3.735 23 N -0.347 5.347 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.206 0.794 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.023 0.977 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.714 -11.027 -6.718 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.268 6.268 4 C 0.388 3.612 5 O -0.399 6.399 6 C -0.249 4.249 7 C -0.088 4.088 8 N -0.079 5.079 9 N -0.089 5.089 10 C -0.005 4.005 11 C -0.164 4.164 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.088 3.912 22 C -0.053 4.053 23 N -0.024 5.024 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.223 0.777 30 H 0.115 0.885 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.776 -10.934 -6.765 21.939 hybrid contribution 0.018 -0.487 0.968 1.083 sum -17.758 -11.421 -5.797 21.895 Atomic orbital electron populations 1.21809 0.92495 1.02978 1.03655 1.23040 0.95282 0.79878 1.02795 1.86515 1.23279 1.32420 1.84560 1.19838 0.80635 0.88064 0.72653 1.90885 1.60355 1.42096 1.46583 1.19046 0.90059 0.92453 1.23314 1.24084 1.00682 0.87618 0.96392 1.77469 0.85998 1.21991 1.22491 1.49635 1.07746 1.01906 1.49565 1.22676 0.79175 0.96115 1.02563 1.22157 1.01621 1.01706 0.90903 1.19062 0.89641 0.94484 0.98043 1.21163 1.09252 1.33674 0.92042 0.92483 1.25008 0.96400 0.95613 0.97298 1.69955 1.16408 1.36174 1.30700 0.86498 0.78563 0.78040 0.84718 1.19672 1.20920 1.20863 1.16195 0.89265 0.83607 1.02163 1.23813 0.92067 0.93690 0.95757 1.81260 1.08442 1.07343 1.05348 0.91324 0.91377 0.90263 0.91144 0.91097 0.77699 0.88466 0.86963 0.91431 0.92573 0.96174 0.95833 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.29 37.16 0.38 -0.40 16 2 C 0.06 0.51 6.20 37.16 0.23 0.74 16 3 O -0.35 -3.58 10.07 -40.65 -0.41 -3.99 16 4 C 0.54 6.95 7.96 34.45 0.27 7.22 16 5 O -0.51 -7.97 15.59 -19.27 -0.30 -8.27 16 6 C -0.23 -2.92 6.16 -104.71 -0.64 -3.56 16 7 C 0.10 1.03 11.82 -17.12 -0.20 0.83 16 8 N -0.26 -3.42 12.49 30.77 0.38 -3.03 16 9 N -0.31 -4.39 3.63 -58.21 -0.21 -4.60 16 10 C 0.11 1.69 6.23 -4.04 -0.03 1.66 16 11 C -0.13 -2.35 5.48 -26.73 -0.15 -2.50 16 12 C 0.03 0.61 4.97 -27.89 -0.14 0.47 16 13 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 17 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.22 3.20 6.83 -83.63 -0.57 2.63 16 22 C 0.27 4.21 13.94 -22.47 -0.31 3.90 16 23 N -0.35 -6.04 18.54 41.84 0.78 -5.26 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.21 1.36 8.06 -52.48 -0.42 0.93 16 30 H 0.10 1.37 7.79 -51.93 -0.40 0.96 16 31 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -31.83 332.21 -5.20 -37.03 By element: Atomic # 1 Polarization: -1.20 SS G_CDS: -4.60 Total: -5.80 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -1.57 Total: -2.06 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 1.69 Total: -38.19 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.71 Total: -12.26 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.83 -5.20 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272423178.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.022 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds