Wall clock time and date at job start Mon Mar 30 2020 02:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37097 * 119.99824 * 2 1 4 4 H 1.08003 * 119.99528 * 204.79938 * 3 2 1 5 5 C 1.38944 * 120.00289 * 24.79874 * 3 2 1 6 6 N 1.31409 * 120.00185 * 6.28579 * 5 3 2 7 7 Si 1.86803 * 120.00167 * 186.28674 * 5 3 2 8 8 H 1.48501 * 109.47100 * 59.99762 * 7 5 3 9 9 H 1.48496 * 109.47171 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46954 * 300.00130 * 7 5 3 11 11 C 1.34776 * 120.00095 * 179.97438 * 2 1 3 12 12 O 1.21288 * 120.00031 * 180.02562 * 11 2 1 13 13 C 1.50704 * 119.99951 * 0.02562 * 11 2 1 14 14 N 1.46503 * 109.47108 * 179.97438 * 13 11 2 15 15 C 1.38875 * 119.99655 * 179.97438 * 14 13 11 16 16 C 1.38954 * 120.17719 * 5.75470 * 15 14 13 17 17 C 1.37959 * 120.06090 * 179.97438 * 16 15 14 18 18 C 1.38603 * 120.42357 * 0.02562 * 17 16 15 19 19 C 1.37746 * 120.35382 * 359.97438 * 18 17 16 20 20 C 1.39737 * 119.92909 * 0.02562 * 19 18 17 21 21 C 1.47426 * 120.20961 * 179.97438 * 20 19 18 22 22 N 1.34773 * 119.99989 * 353.79269 * 21 20 19 23 23 O 1.21605 * 120.00002 * 173.78584 * 21 20 19 24 24 H 1.09009 * 109.47176 * 274.71662 * 1 2 3 25 25 H 1.08994 * 109.46926 * 34.71221 * 1 2 3 26 26 H 1.08995 * 109.47212 * 154.71345 * 1 2 3 27 27 H 0.96997 * 120.00273 * 179.97438 * 6 5 3 28 28 H 1.08993 * 109.46841 * 59.99712 * 13 11 2 29 29 H 1.09008 * 109.46924 * 300.00025 * 13 11 2 30 30 H 0.96997 * 119.99983 * 0.02562 * 14 13 11 31 31 H 1.07996 * 119.96918 * 0.25125 * 16 15 14 32 32 H 1.08002 * 119.78510 * 180.02562 * 17 16 15 33 33 H 1.08004 * 119.82181 * 179.97438 * 18 17 16 34 34 H 1.08008 * 120.03505 * 180.02562 * 19 18 17 35 35 H 0.97003 * 120.00448 * 359.97438 * 22 21 20 36 36 H 0.97002 * 120.00090 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1558 1.2304 -0.3923 5 6 1.5518 2.3351 0.5047 6 7 0.3796 2.2602 1.0937 7 14 2.4135 3.9850 0.3459 8 1 2.6290 4.2946 -1.0904 9 1 1.5722 5.0438 0.9592 10 1 3.7239 3.9280 1.0420 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 7 2.3374 -3.5858 0.0005 15 6 1.8744 -4.8951 0.0011 16 6 0.5147 -5.1553 -0.1188 17 6 0.0575 -6.4569 -0.1186 18 6 0.9468 -7.5132 0.0014 19 6 2.2982 -7.2751 0.1213 20 6 2.7775 -5.9625 0.1227 21 6 4.2226 -5.7007 0.2512 22 7 5.0730 -6.7179 0.4930 23 8 4.6474 -4.5668 0.1389 24 1 -0.3634 0.0845 1.0243 25 1 -0.3633 0.8447 -0.5852 26 1 -0.3633 -0.9291 -0.4389 27 1 -0.0382 3.0614 1.4464 28 1 0.7591 -2.5302 -0.8896 29 1 0.7584 -2.5298 0.8903 30 1 3.2911 -3.4086 0.0009 31 1 -0.1843 -4.3379 -0.2168 32 1 -1.0002 -6.6540 -0.2124 33 1 0.5782 -8.5284 0.0009 34 1 2.9867 -8.1022 0.2141 35 1 4.7341 -7.6224 0.5829 36 1 6.0238 -6.5457 0.5772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277700944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:13 Heat of formation + Delta-G solvation = -54.824056 kcal Electronic energy + Delta-G solvation = -21052.815704 eV Core-core repulsion = 17729.279670 eV Total energy + Delta-G solvation = -3323.536035 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39456 -40.43957 -39.10562 -37.01022 -36.20311 -34.66944 -33.73082 -31.83705 -30.87790 -28.62681 -27.56015 -25.90240 -24.93006 -22.65899 -21.90330 -20.67060 -19.22429 -18.92441 -18.27793 -17.84192 -17.28309 -16.75463 -16.67026 -16.23818 -16.03122 -15.86131 -15.59357 -14.92776 -14.77810 -14.63683 -14.22405 -13.95002 -13.66809 -13.35409 -13.13152 -13.04165 -12.84110 -12.73095 -12.39904 -12.15600 -12.03869 -11.11669 -11.06022 -10.93012 -10.74471 -10.52268 -9.86671 -9.76265 -8.38190 -8.36250 -6.06756 0.05920 0.75367 1.35881 1.37935 1.48644 1.89494 1.94148 2.18779 2.46762 2.63964 3.03409 3.05962 3.07896 3.88874 3.94654 4.01157 4.21363 4.26765 4.38238 4.55665 4.60344 4.63553 4.74428 5.03264 5.05838 5.26991 5.38271 5.39224 5.51131 5.70055 5.87117 5.94040 6.04814 6.30956 6.42831 6.54269 6.85578 7.09080 7.35878 7.42524 7.90785 8.63737 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028592 B = 0.004149 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.064671 B = 6747.754924 C = 7641.819398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.454 5.454 3 C -0.349 4.349 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.893 5.893 7 Si 0.992 3.008 8 H -0.267 1.267 9 H -0.264 1.264 10 H -0.280 1.280 11 C 0.422 3.578 12 O -0.629 6.629 13 C 0.121 3.879 14 N -0.729 5.729 15 C 0.249 3.751 16 C -0.229 4.229 17 C -0.033 4.033 18 C -0.194 4.194 19 C -0.027 4.027 20 C -0.261 4.261 21 C 0.557 3.443 22 N -0.828 5.828 23 O -0.598 6.598 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.276 0.724 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.414 0.586 31 H 0.133 0.867 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.418 0.582 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.263 -21.441 -1.284 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.173 5.173 3 C -0.477 4.477 4 H 0.085 0.915 5 C -0.200 4.200 6 N -0.531 5.531 7 Si 0.815 3.185 8 H -0.191 1.191 9 H -0.189 1.189 10 H -0.206 1.206 11 C 0.212 3.788 12 O -0.516 6.516 13 C -0.007 4.007 14 N -0.367 5.367 15 C 0.139 3.861 16 C -0.252 4.252 17 C -0.052 4.052 18 C -0.213 4.213 19 C -0.046 4.046 20 C -0.270 4.270 21 C 0.347 3.653 22 N -0.392 5.392 23 O -0.481 6.481 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.263 0.737 31 H 0.151 0.849 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.251 0.749 36 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.823 -20.337 -1.284 20.733 hybrid contribution 1.157 1.133 0.140 1.626 sum -2.666 -19.203 -1.144 19.421 Atomic orbital electron populations 1.21587 0.78650 1.00325 1.01937 1.43779 1.07116 1.04196 1.62220 1.19576 1.00532 0.86293 1.41299 0.91459 1.26114 0.96977 1.02766 0.94160 1.70027 1.16166 1.30959 1.35995 0.85031 0.77864 0.76680 0.78938 1.19144 1.18851 1.20572 1.20916 0.88101 0.86538 0.83293 1.90515 1.16176 1.87494 1.57434 1.21007 0.91839 0.84115 1.03710 1.45684 1.11716 1.02124 1.77201 1.18340 0.93985 0.83529 0.90271 1.20973 0.92247 0.99596 1.12377 1.21496 1.01442 0.90860 0.91357 1.21224 0.92374 1.00521 1.07229 1.21358 0.97222 0.93282 0.92701 1.19385 0.91301 0.94897 1.21413 1.18630 0.87493 0.84406 0.74795 1.43411 1.10812 1.10526 1.74445 1.90596 1.79087 1.24109 1.54268 0.92782 0.92607 0.90940 0.91454 0.87981 0.88635 0.73665 0.84866 0.82568 0.82310 0.82318 0.74898 0.75942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.21 8.55 127.77 1.09 6.30 16 2 N -0.45 -24.54 3.02 -658.90 -1.99 -26.53 16 3 C -0.35 -20.73 9.26 84.04 0.78 -19.96 16 4 H 0.07 4.30 7.43 -2.91 -0.02 4.28 16 5 C 0.00 0.11 5.23 84.93 0.44 0.56 16 6 N -0.89 -47.64 10.48 21.66 0.23 -47.42 16 7 Si 0.99 43.73 29.56 68.60 2.03 45.76 16 8 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 9 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 C 0.42 22.51 7.70 87.66 0.67 23.19 16 12 O -0.63 -39.54 15.38 -3.05 -0.05 -39.58 16 13 C 0.12 4.85 3.91 85.63 0.33 5.18 16 14 N -0.73 -30.29 5.56 -342.52 -1.90 -32.20 16 15 C 0.25 8.19 6.65 38.71 0.26 8.45 16 16 C -0.23 -5.77 9.30 22.38 0.21 -5.57 16 17 C -0.03 -0.57 10.03 22.29 0.22 -0.35 16 18 C -0.19 -2.88 10.02 22.24 0.22 -2.66 16 19 C -0.03 -0.47 9.52 22.52 0.21 -0.25 16 20 C -0.26 -7.37 5.89 -19.98 -0.12 -7.49 16 21 C 0.56 17.46 8.02 86.66 0.69 18.15 16 22 N -0.83 -15.35 8.82 -175.89 -1.55 -16.91 16 23 O -0.60 -26.21 14.48 -4.05 -0.06 -26.27 16 24 H 0.05 2.48 7.37 -2.38 -0.02 2.46 16 25 H 0.06 2.59 7.25 -2.39 -0.02 2.57 16 26 H 0.07 2.48 6.27 -2.39 -0.01 2.46 16 27 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 28 H 0.10 3.45 6.99 -2.39 -0.02 3.43 16 29 H 0.10 3.42 8.10 -2.38 -0.02 3.40 16 30 H 0.41 20.42 3.95 -94.51 -0.37 20.04 16 31 H 0.13 3.09 6.72 -2.91 -0.02 3.07 16 32 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 33 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 34 H 0.16 1.38 6.45 -2.91 -0.02 1.36 16 35 H 0.42 4.08 6.90 -92.71 -0.64 3.44 16 36 H 0.41 6.83 8.93 -92.71 -0.83 6.00 16 Total: -1.00 -83.07 303.47 1.05 -82.02 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.68 Total: 35.57 kcal Atomic # 6 Polarization: 20.53 SS G_CDS: 5.03 Total: 25.55 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -5.22 Total: -123.05 kcal Atomic # 8 Polarization: -65.75 SS G_CDS: -0.11 Total: -65.86 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -83.07 1.05 -82.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277700944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.200 kcal (2) G-P(sol) polarization free energy of solvation -83.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds