Wall clock time and date at job start Mon Mar 30 2020 01:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46969 * 142.66545 * 3 2 1 5 5 C 1.37099 * 119.99520 * 263.31518 * 4 3 2 6 6 H 1.08005 * 120.00214 * 196.40797 * 5 4 3 7 7 C 1.38944 * 120.00241 * 16.41261 * 5 4 3 8 8 N 1.31419 * 120.00118 * 15.28397 * 7 5 4 9 9 Si 1.86800 * 120.00285 * 195.28612 * 7 5 4 10 10 H 1.48494 * 109.47369 * 89.99487 * 9 7 5 11 11 H 1.48504 * 109.47366 * 210.00059 * 9 7 5 12 12 H 1.48499 * 109.46990 * 329.99829 * 9 7 5 13 13 C 1.34770 * 120.00321 * 83.31958 * 4 3 2 14 14 O 1.21297 * 119.99965 * 185.49146 * 13 4 3 15 15 C 1.50697 * 120.00439 * 5.48271 * 13 4 3 16 16 H 1.09003 * 109.46827 * 317.76716 * 15 13 4 17 17 O 1.42897 * 109.47692 * 197.76282 * 15 13 4 18 18 C 1.42900 * 113.99958 * 149.99967 * 17 15 13 19 19 C 1.50703 * 109.47033 * 77.76047 * 15 13 4 20 20 C 1.39867 * 126.03606 * 76.80417 * 19 15 13 21 21 N 1.30841 * 108.20330 * 179.82047 * 20 19 15 22 22 N 1.40089 * 108.20044 * 0.43904 * 21 20 19 23 23 C 1.46504 * 126.03442 * 179.73906 * 22 21 20 24 24 C 1.34945 * 107.92713 * 359.72000 * 22 21 20 25 25 H 4.40639 * 5.51473 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.47454 * 22.65769 * 3 2 1 27 27 H 1.09007 * 109.46516 * 262.66107 * 3 2 1 28 28 H 0.96995 * 120.00080 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.47158 * 180.02562 * 18 17 15 30 30 H 1.08998 * 109.47485 * 60.00313 * 18 17 15 31 31 H 1.09005 * 109.47220 * 299.99934 * 18 17 15 32 32 H 1.08001 * 125.90053 * 359.97438 * 20 19 15 33 33 H 1.08991 * 109.47034 * 269.97592 * 23 22 21 34 34 H 1.08997 * 109.46979 * 29.97804 * 23 22 21 35 35 H 1.09001 * 109.46933 * 149.97524 * 23 22 21 36 36 H 1.08002 * 126.12612 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0991 -0.8376 5 6 3.4927 0.8612 -2.1393 6 1 4.0909 1.5833 -2.6752 7 6 3.0868 -0.3089 -2.7691 8 7 2.1281 -1.0389 -2.2447 9 14 3.9038 -0.8444 -4.3614 10 1 5.0707 -1.7093 -4.0525 11 1 2.9299 -1.6031 -5.1867 12 1 4.3603 0.3536 -5.1107 13 6 3.2299 2.3433 -0.3287 14 8 3.5380 3.2704 -1.0476 15 6 2.9543 2.5828 1.1333 16 1 2.0783 2.0094 1.4366 17 8 2.7117 3.9742 1.3507 18 6 1.8243 4.2465 2.4372 19 6 4.1459 2.1476 1.9469 20 6 5.3462 2.8513 2.0896 21 7 6.1348 2.1600 2.8720 22 7 5.4639 0.9879 3.2442 23 6 5.9914 -0.0688 4.1112 24 6 4.2459 1.0042 2.6637 25 1 -1.0502 -0.0003 0.0000 26 1 3.0098 -0.9475 -0.3959 27 1 3.0092 0.1321 1.0193 28 1 1.8450 -1.8559 -2.6842 29 1 1.6914 5.3239 2.5365 30 1 2.2451 3.8456 3.3593 31 1 0.8592 3.7780 2.2444 32 1 5.5806 3.8024 1.6348 33 1 6.5074 -0.8127 3.5044 34 1 6.6899 0.3638 4.8274 35 1 5.1693 -0.5435 4.6467 36 1 3.4869 0.2412 2.7545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281553390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:27 Heat of formation + Delta-G solvation = 63.856586 kcal Electronic energy + Delta-G solvation = -22045.762638 eV Core-core repulsion = 18727.372982 eV Total energy + Delta-G solvation = -3318.389656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.35939 -40.52328 -38.45480 -36.97503 -34.33584 -33.98915 -33.04513 -32.10648 -29.32102 -28.29091 -27.32573 -26.94255 -25.43895 -22.08313 -22.04246 -20.72770 -19.69464 -18.57990 -18.53017 -17.53056 -17.12881 -16.72774 -16.26695 -16.24386 -15.83247 -15.54028 -15.26495 -15.09793 -14.31714 -14.10309 -14.03609 -13.89360 -13.49548 -13.38700 -13.30339 -13.00713 -12.76153 -12.49876 -12.25050 -12.12830 -11.72816 -11.25316 -11.08801 -10.87290 -10.61951 -10.41709 -10.28652 -9.80974 -9.37029 -8.28587 -5.92542 0.84217 1.35960 1.41992 1.52653 1.62035 1.66384 1.89269 2.12487 2.33727 2.37157 2.65841 3.06683 3.52061 3.64790 3.78163 3.95570 4.02312 4.15024 4.33882 4.36444 4.49568 4.58714 4.61043 4.67736 4.74388 4.83778 4.85363 4.92897 5.07239 5.44792 5.46441 5.54508 5.97238 6.07782 6.24795 6.51229 6.65788 7.12488 7.16216 7.41593 7.99399 8.68003 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.006809 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.411847 B = 4111.154482 C = 4527.259069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.160 4.160 3 C 0.228 3.772 4 N -0.445 5.445 5 C -0.345 4.345 6 H 0.071 0.929 7 C 0.003 3.997 8 N -0.876 5.876 9 Si 0.985 3.015 10 H -0.265 1.265 11 H -0.273 1.273 12 H -0.282 1.282 13 C 0.447 3.553 14 O -0.619 6.619 15 C 0.178 3.822 16 H 0.091 0.909 17 O -0.386 6.386 18 C 0.026 3.974 19 C -0.275 4.275 20 C 0.064 3.936 21 N -0.322 5.322 22 N -0.369 5.369 23 C 0.090 3.910 24 C 0.079 3.921 25 H 0.236 0.764 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.273 0.727 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.173 0.827 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 -3.804 15.166 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.162 4.162 3 C 0.106 3.894 4 N -0.164 5.164 5 C -0.472 4.472 6 H 0.089 0.911 7 C -0.199 4.199 8 N -0.514 5.514 9 Si 0.809 3.191 10 H -0.190 1.190 11 H -0.198 1.198 12 H -0.207 1.207 13 C 0.236 3.764 14 O -0.505 6.505 15 C 0.115 3.885 16 H 0.108 0.892 17 O -0.304 6.304 18 C -0.070 4.070 19 C -0.287 4.287 20 C -0.121 4.121 21 N -0.144 5.144 22 N -0.151 5.151 23 C -0.049 4.049 24 C -0.069 4.069 25 H 0.252 0.748 26 H 0.123 0.877 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.190 0.810 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.172 -3.582 15.341 15.798 hybrid contribution -0.803 -0.165 -1.522 1.728 sum 0.369 -3.748 13.820 14.324 Atomic orbital electron populations 1.25224 0.96373 1.01207 1.03152 1.23546 0.95038 0.99606 0.97992 1.18583 0.84524 0.92705 0.93580 1.43738 1.55904 1.05845 1.10919 1.19611 1.32069 1.05853 0.89716 0.91136 1.25911 0.95611 0.96399 1.02003 1.70110 1.24682 1.15638 1.40931 0.85059 0.78317 0.78031 0.77675 1.18988 1.19832 1.20690 1.20676 0.83097 0.82528 0.90069 1.90475 1.54063 1.43268 1.62660 1.19683 0.95090 0.83877 0.89852 0.89180 1.87970 1.67260 1.22164 1.53031 1.23033 0.92258 1.03022 0.88727 1.20242 0.98835 0.99753 1.09917 1.23657 0.91777 1.00117 0.96579 1.77278 1.21173 0.96281 1.19712 1.48856 1.11112 1.16814 1.38304 1.22310 1.02484 0.86838 0.93241 1.22726 0.90306 0.98584 0.95286 0.74780 0.87736 0.89037 0.91673 0.87967 0.92767 0.93288 0.80982 0.89765 0.88514 0.85943 0.77186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.03 19.25 74.32 1.43 -7.60 16 2 C -0.16 -6.76 10.96 31.13 0.34 -6.42 16 3 C 0.23 9.81 4.79 84.58 0.40 10.22 16 4 N -0.45 -23.27 2.61 -645.42 -1.68 -24.95 16 5 C -0.34 -19.86 9.37 84.04 0.79 -19.07 16 6 H 0.07 4.42 7.38 -2.91 -0.02 4.40 16 7 C 0.00 0.17 5.05 84.92 0.43 0.60 16 8 N -0.88 -44.62 9.15 21.66 0.20 -44.42 16 9 Si 0.99 42.49 29.58 68.60 2.03 44.52 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 C 0.45 23.48 6.80 87.66 0.60 24.08 16 14 O -0.62 -38.35 16.27 15.32 0.25 -38.10 16 15 C 0.18 7.14 2.16 29.10 0.06 7.20 16 16 H 0.09 3.25 6.20 -2.39 -0.01 3.23 16 17 O -0.39 -15.51 9.76 -130.57 -1.28 -16.78 16 18 C 0.03 0.70 10.81 113.37 1.23 1.93 16 19 C -0.27 -9.68 4.76 -20.14 -0.10 -9.77 16 20 C 0.06 2.35 11.76 85.23 1.00 3.36 16 21 N -0.32 -10.83 12.58 -57.02 -0.72 -11.55 16 22 N -0.37 -9.63 4.01 -369.57 -1.48 -11.12 16 23 C 0.09 1.29 11.47 127.77 1.47 2.76 16 24 C 0.08 2.15 9.90 83.54 0.83 2.98 16 25 H 0.24 6.64 7.80 -4.41 -0.03 6.61 16 26 H 0.10 4.82 6.09 -2.39 -0.01 4.80 16 27 H 0.09 3.16 3.52 -2.38 -0.01 3.16 16 28 H 0.27 13.12 8.31 -92.71 -0.77 12.34 16 29 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.23 8.09 -2.38 -0.02 1.21 16 32 H 0.17 6.49 8.06 -2.91 -0.02 6.47 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.21 4.02 6.88 -2.91 -0.02 4.00 16 Total: -1.00 -78.65 315.37 6.89 -71.76 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 1.10 Total: 20.40 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 8.48 Total: 10.24 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -3.68 Total: -92.04 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: -1.03 Total: -54.89 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -78.65 6.89 -71.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281553390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.618 kcal (2) G-P(sol) polarization free energy of solvation -78.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds