Wall clock time and date at job start Mon Mar 30 2020 02:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41593 * 113.99945 * 2 1 4 4 C 1.29263 * 120.00588 * 180.02562 * 3 2 1 5 5 C 1.47591 * 120.00647 * 180.02562 * 4 3 2 6 6 O 1.21550 * 119.99807 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00179 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00031 * 359.97438 * 7 5 4 9 9 C 1.50708 * 109.47222 * 270.00350 * 8 7 5 10 10 H 1.08001 * 119.99641 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99593 * 180.02562 * 9 8 7 12 12 N 1.31507 * 120.00497 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99474 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47205 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47572 * 120.00003 * 13 11 9 16 16 H 1.48504 * 109.46486 * 239.99703 * 13 11 9 17 17 C 1.46504 * 120.00218 * 180.02562 * 7 5 4 18 18 C 1.50707 * 109.46520 * 269.99763 * 17 7 5 19 19 C 1.38227 * 119.62024 * 94.97709 * 18 17 7 20 20 C 1.38627 * 119.15702 * 179.78495 * 19 18 17 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61172 * 274.99461 * 18 17 7 24 24 H 1.08996 * 109.47150 * 299.99381 * 1 2 3 25 25 H 1.08996 * 109.47305 * 60.00124 * 1 2 3 26 26 H 1.09006 * 109.46607 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.99638 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.46971 * 30.00217 * 8 7 5 29 29 H 1.09001 * 109.47203 * 150.00350 * 8 7 5 30 30 H 0.97002 * 120.00601 * 180.02562 * 12 11 9 31 31 H 1.08993 * 109.47601 * 149.99340 * 17 7 5 32 32 H 1.08997 * 109.47191 * 29.98873 * 17 7 5 33 33 H 1.07998 * 120.41916 * 359.97438 * 19 18 17 34 34 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 35 35 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 36 36 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 3.2905 1.4288 -0.0005 5 6 3.8908 2.7771 0.0001 6 8 3.1763 3.7604 0.0005 7 7 5.2311 2.9180 -0.0010 8 6 6.0923 1.7328 -0.0021 9 6 6.3887 1.3258 1.4184 10 1 5.9764 1.8931 2.2398 11 6 7.1861 0.2294 1.6691 12 7 7.6877 -0.4615 0.6689 13 14 7.5529 -0.2755 3.4299 14 1 6.8743 0.6582 4.3641 15 1 7.0578 -1.6560 3.6624 16 1 9.0189 -0.2296 3.6627 17 6 5.8270 4.2564 0.0002 18 6 6.0301 4.7169 -1.4204 19 6 5.0685 5.5024 -2.0280 20 6 5.2672 5.9243 -3.3334 21 6 6.4260 5.5305 -3.9853 22 6 7.3428 4.7448 -3.3132 23 7 7.1228 4.3656 -2.0693 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 3.9253 0.5550 -0.0005 28 1 5.5854 0.9160 -0.5159 29 1 7.0255 1.9622 -0.5166 30 1 8.2484 -1.2332 0.8453 31 1 6.7882 4.2258 0.5131 32 1 5.1622 4.9497 0.5153 33 1 4.1753 5.7862 -1.4914 34 1 4.5348 6.5418 -3.8323 35 1 6.6119 5.8378 -5.0038 36 1 8.2497 4.4372 -3.8124 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283203604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:35 Heat of formation + Delta-G solvation = 27.516674 kcal Electronic energy + Delta-G solvation = -20989.132613 eV Core-core repulsion = 17669.167141 eV Total energy + Delta-G solvation = -3319.965473 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11893 -39.02786 -37.16569 -35.28308 -33.35043 -32.74319 -32.21508 -31.43259 -27.78022 -27.04806 -26.09810 -23.60390 -23.25975 -22.77234 -21.43446 -18.41577 -17.45332 -16.89666 -16.43663 -16.31307 -15.79807 -15.41879 -15.30153 -15.08005 -14.83992 -14.39870 -14.15649 -13.53268 -13.10512 -12.88392 -12.71615 -12.39122 -12.25624 -11.69158 -11.65626 -11.50116 -11.30821 -10.97063 -10.78500 -10.32383 -9.98902 -9.79476 -9.67991 -9.43255 -9.28939 -9.15414 -8.81039 -8.54149 -7.91786 -6.18573 -4.26457 1.25295 1.48570 1.66464 2.67133 3.23640 3.32256 3.36211 3.72482 3.83041 4.25949 4.36778 4.56978 4.94956 5.01053 5.14868 5.20122 5.23948 5.35314 5.47135 5.49267 5.60728 5.74027 5.75511 5.85913 5.98186 6.16175 6.31358 6.32458 6.36170 6.61434 6.88966 7.12965 7.38045 7.62300 7.75314 8.01037 8.09758 8.27903 8.65704 8.83903 9.41367 10.88423 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.007031 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.486301 B = 3981.382280 C = 6077.389131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.244 6.244 3 N -0.285 5.285 4 C 0.090 3.910 5 C 0.567 3.433 6 O -0.547 6.547 7 N -0.570 5.570 8 C 0.231 3.769 9 C -0.542 4.542 10 H 0.064 0.936 11 C 0.067 3.933 12 N -0.887 5.887 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.170 3.830 18 C 0.117 3.883 19 C -0.151 4.151 20 C -0.083 4.083 21 C -0.180 4.180 22 C 0.095 3.905 23 N -0.463 5.463 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.094 0.906 27 H 0.148 0.852 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.265 0.735 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 7.444 -6.545 11.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.259 6.259 3 N -0.035 5.035 4 C -0.125 4.125 5 C 0.352 3.648 6 O -0.424 6.424 7 N -0.301 5.301 8 C 0.112 3.888 9 C -0.581 4.581 10 H 0.082 0.918 11 C -0.137 4.137 12 N -0.525 5.525 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.046 3.954 18 C -0.022 4.022 19 C -0.172 4.172 20 C -0.110 4.110 21 C -0.200 4.200 22 C -0.063 4.063 23 N -0.172 5.172 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.165 0.835 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.673 7.504 -6.144 11.236 hybrid contribution 0.149 -0.597 0.357 0.711 sum -5.523 6.907 -5.787 10.569 Atomic orbital electron populations 1.22690 0.79011 1.02216 1.01140 1.89897 1.21909 1.20802 1.93280 1.76717 1.14119 1.03301 1.09362 1.25795 0.92685 0.99828 0.94218 1.17542 0.82667 0.86753 0.77817 1.90701 1.61301 1.39531 1.50917 1.48008 1.04722 1.08281 1.69097 1.19689 0.90453 0.80693 0.97973 1.21518 1.31645 1.12854 0.92064 0.91784 1.24926 0.95239 0.95972 0.97517 1.69932 1.33151 1.18683 1.30768 0.86453 0.78178 0.78523 0.84420 1.19605 1.20860 1.20781 1.20210 1.00611 0.84471 0.90083 1.21822 0.89664 0.93189 0.97539 1.22148 1.00349 0.98858 0.95800 1.21554 0.96913 0.97922 0.94562 1.22106 0.95866 1.00815 1.01197 1.22770 0.98742 0.94102 0.90638 1.67591 1.21036 1.19653 1.08899 0.93189 0.93291 0.88746 0.83464 0.94534 0.92733 0.92496 0.87833 0.88857 0.84307 0.85233 0.85258 0.82968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 11.47 101.05 1.16 1.76 16 2 O -0.24 -4.46 11.72 -11.47 -0.13 -4.59 16 3 N -0.29 -5.75 11.11 32.11 0.36 -5.40 16 4 C 0.09 1.86 10.23 -14.82 -0.15 1.71 16 5 C 0.57 11.92 7.68 -12.45 -0.10 11.83 16 6 O -0.55 -11.96 16.40 5.32 0.09 -11.88 16 7 N -0.57 -11.78 2.44 -177.64 -0.43 -12.21 16 8 C 0.23 5.41 4.88 -5.19 -0.03 5.39 16 9 C -0.54 -13.85 9.39 -34.44 -0.32 -14.17 16 10 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 11 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 13 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 C 0.17 3.08 5.72 -5.19 -0.03 3.05 16 18 C 0.12 2.00 6.36 -82.58 -0.53 1.48 16 19 C -0.15 -2.28 9.72 -39.44 -0.38 -2.66 16 20 C -0.08 -1.05 10.18 -39.28 -0.40 -1.45 16 21 C -0.18 -2.15 10.11 -39.44 -0.40 -2.55 16 22 C 0.10 1.34 11.18 -17.55 -0.20 1.14 16 23 N -0.46 -8.08 10.27 -9.47 -0.10 -8.18 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.15 3.09 6.24 -52.48 -0.33 2.77 16 28 H 0.04 0.89 6.10 -51.93 -0.32 0.57 16 29 H 0.05 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.10 1.88 8.07 -51.93 -0.42 1.46 16 32 H 0.09 1.56 7.32 -51.93 -0.38 1.18 16 33 H 0.14 2.06 8.00 -52.49 -0.42 1.64 16 34 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -30.59 326.99 -5.41 -35.99 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.36 Total: 2.28 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -1.47 Total: 7.18 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.56 Total: -49.37 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.05 Total: -16.47 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.59 -5.41 -35.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283203604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.511 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds