Wall clock time and date at job start Mon Mar 30 2020 02:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41593 * 113.99945 * 2 1 4 4 C 1.29263 * 120.00588 * 180.02562 * 3 2 1 5 5 C 1.47591 * 120.00647 * 180.02562 * 4 3 2 6 6 O 1.21550 * 119.99807 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00179 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00031 * 359.97438 * 7 5 4 9 9 C 1.50708 * 109.47222 * 270.00350 * 8 7 5 10 10 H 1.08001 * 119.99641 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99593 * 180.02562 * 9 8 7 12 12 N 1.31507 * 120.00497 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99474 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47205 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47572 * 120.00003 * 13 11 9 16 16 H 1.48504 * 109.46486 * 239.99703 * 13 11 9 17 17 C 1.46504 * 120.00218 * 180.02562 * 7 5 4 18 18 C 1.50707 * 109.46520 * 269.99763 * 17 7 5 19 19 C 1.38227 * 119.62024 * 94.97709 * 18 17 7 20 20 C 1.38627 * 119.15702 * 179.78495 * 19 18 17 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61172 * 274.99461 * 18 17 7 24 24 H 1.08996 * 109.47150 * 299.99381 * 1 2 3 25 25 H 1.08996 * 109.47305 * 60.00124 * 1 2 3 26 26 H 1.09006 * 109.46607 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.99638 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.46971 * 30.00217 * 8 7 5 29 29 H 1.09001 * 109.47203 * 150.00350 * 8 7 5 30 30 H 0.97002 * 120.00601 * 180.02562 * 12 11 9 31 31 H 1.08993 * 109.47601 * 149.99340 * 17 7 5 32 32 H 1.08997 * 109.47191 * 29.98873 * 17 7 5 33 33 H 1.07998 * 120.41916 * 359.97438 * 19 18 17 34 34 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 35 35 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 36 36 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 3.2905 1.4288 -0.0005 5 6 3.8908 2.7771 0.0001 6 8 3.1763 3.7604 0.0005 7 7 5.2311 2.9180 -0.0010 8 6 6.0923 1.7328 -0.0021 9 6 6.3887 1.3258 1.4184 10 1 5.9764 1.8931 2.2398 11 6 7.1861 0.2294 1.6691 12 7 7.6877 -0.4615 0.6689 13 14 7.5529 -0.2755 3.4299 14 1 6.8743 0.6582 4.3641 15 1 7.0578 -1.6560 3.6624 16 1 9.0189 -0.2296 3.6627 17 6 5.8270 4.2564 0.0002 18 6 6.0301 4.7169 -1.4204 19 6 5.0685 5.5024 -2.0280 20 6 5.2672 5.9243 -3.3334 21 6 6.4260 5.5305 -3.9853 22 6 7.3428 4.7448 -3.3132 23 7 7.1228 4.3656 -2.0693 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 3.9253 0.5550 -0.0005 28 1 5.5854 0.9160 -0.5159 29 1 7.0255 1.9622 -0.5166 30 1 8.2484 -1.2332 0.8453 31 1 6.7882 4.2258 0.5131 32 1 5.1622 4.9497 0.5153 33 1 4.1753 5.7862 -1.4914 34 1 4.5348 6.5418 -3.8323 35 1 6.6119 5.8378 -5.0038 36 1 8.2497 4.4372 -3.8124 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283203604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:35 Heat of formation + Delta-G solvation = 7.967275 kcal Electronic energy + Delta-G solvation = -20989.980339 eV Core-core repulsion = 17669.167141 eV Total energy + Delta-G solvation = -3320.813198 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.42500 -40.50414 -38.60050 -36.96635 -34.92928 -34.54382 -33.35519 -32.75443 -29.45336 -28.55673 -27.37307 -25.27064 -24.49757 -24.28900 -22.72976 -20.03456 -19.03906 -18.69071 -17.88707 -17.67929 -17.19962 -16.85893 -16.54827 -16.44005 -16.32818 -16.04507 -15.62102 -14.87092 -14.44889 -14.22974 -14.18892 -13.94594 -13.55196 -13.29449 -13.06997 -12.90438 -12.77679 -12.60594 -12.55745 -12.15835 -11.73391 -11.60371 -10.89665 -10.84735 -10.77137 -10.57384 -10.36588 -9.94970 -9.60110 -8.19833 -6.34358 0.02227 0.15467 0.42250 1.24279 1.42359 1.45416 1.56052 2.08120 2.35552 2.49398 3.01968 3.11743 3.38977 3.57548 3.85019 4.05697 4.14830 4.23348 4.28841 4.46579 4.49857 4.52182 4.61664 4.71436 4.79576 4.83416 4.87800 4.91675 5.21399 5.26263 5.30121 5.54610 5.74444 5.84343 6.02750 6.11365 6.36639 6.76675 7.04316 7.14226 7.37236 8.86770 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.007031 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.486301 B = 3981.382280 C = 6077.389131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.254 6.254 3 N -0.288 5.288 4 C 0.079 3.921 5 C 0.567 3.433 6 O -0.557 6.557 7 N -0.569 5.569 8 C 0.251 3.749 9 C -0.549 4.549 10 H 0.059 0.941 11 C 0.023 3.977 12 N -0.918 5.918 13 Si 0.957 3.043 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.277 1.277 17 C 0.169 3.831 18 C 0.092 3.908 19 C -0.160 4.160 20 C -0.080 4.080 21 C -0.163 4.163 22 C 0.080 3.920 23 N -0.502 5.502 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.132 0.868 27 H 0.139 0.861 28 H 0.026 0.974 29 H 0.034 0.966 30 H 0.268 0.732 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 7.970 -7.360 12.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 N -0.036 5.036 4 C -0.136 4.136 5 C 0.353 3.647 6 O -0.436 6.436 7 N -0.299 5.299 8 C 0.131 3.869 9 C -0.587 4.587 10 H 0.077 0.923 11 C -0.178 4.178 12 N -0.557 5.557 13 Si 0.783 3.217 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.203 1.203 17 C 0.046 3.954 18 C -0.046 4.046 19 C -0.181 4.181 20 C -0.106 4.106 21 C -0.183 4.183 22 C -0.077 4.077 23 N -0.212 5.212 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.149 0.851 27 H 0.156 0.844 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.154 0.846 34 H 0.183 0.817 35 H 0.189 0.811 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.505 8.064 -6.957 12.480 hybrid contribution 0.305 -0.754 0.510 0.960 sum -6.200 7.310 -6.447 11.552 Atomic orbital electron populations 1.23123 0.76227 1.04894 1.01882 1.89907 1.24858 1.19401 1.92968 1.76601 1.13744 1.05195 1.08021 1.25611 0.92826 0.99285 0.95875 1.17594 0.82584 0.86920 0.77569 1.90678 1.61348 1.39856 1.51712 1.47932 1.04485 1.08591 1.68931 1.19245 0.89727 0.81322 0.96650 1.21715 1.31444 1.12821 0.92750 0.92320 1.25644 0.95105 0.96003 1.01043 1.70024 1.33865 1.19206 1.32584 0.85514 0.78051 0.78100 0.80075 1.19342 1.20486 1.20284 1.20282 1.00045 0.83293 0.91750 1.21570 0.90859 0.95087 0.97070 1.22193 0.99765 0.98959 0.97161 1.21987 0.97773 0.97387 0.93423 1.22531 0.94471 0.98628 1.02620 1.23278 1.00234 0.94396 0.89816 1.67495 1.21743 1.21153 1.10850 0.92601 0.92387 0.85056 0.84384 0.95630 0.94818 0.92295 0.88840 0.87991 0.84570 0.81744 0.81112 0.80814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.47 113.37 1.30 2.12 16 2 O -0.25 -9.02 11.72 -38.77 -0.45 -9.47 16 3 N -0.29 -11.57 11.11 -52.32 -0.58 -12.15 16 4 C 0.08 3.34 10.23 87.54 0.90 4.23 16 5 C 0.57 24.40 7.68 86.71 0.67 25.07 16 6 O -0.56 -24.60 16.40 -3.87 -0.06 -24.67 16 7 N -0.57 -24.32 2.44 -834.22 -2.04 -26.36 16 8 C 0.25 12.23 4.88 85.64 0.42 12.64 16 9 C -0.55 -28.68 9.39 25.60 0.24 -28.44 16 10 H 0.06 3.08 7.81 -2.91 -0.02 3.05 16 11 C 0.02 1.20 5.46 84.66 0.46 1.67 16 12 N -0.92 -51.09 13.29 21.45 0.28 -50.80 16 13 Si 0.96 42.19 29.54 68.60 2.03 44.22 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 15 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 16 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 17 C 0.17 6.36 5.72 85.63 0.49 6.85 16 18 C 0.09 3.21 6.36 42.55 0.27 3.48 16 19 C -0.16 -4.73 9.72 22.36 0.22 -4.51 16 20 C -0.08 -1.80 10.18 22.47 0.23 -1.57 16 21 C -0.16 -3.39 10.11 22.36 0.23 -3.17 16 22 C 0.08 2.15 11.18 84.67 0.95 3.09 16 23 N -0.50 -17.78 10.27 -183.88 -1.89 -19.67 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.13 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.14 6.03 6.24 -2.91 -0.02 6.01 16 28 H 0.03 1.30 6.10 -2.39 -0.01 1.29 16 29 H 0.03 1.78 8.07 -2.39 -0.02 1.76 16 30 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.09 3.60 8.07 -2.39 -0.02 3.58 16 32 H 0.10 3.55 7.32 -2.39 -0.02 3.53 16 33 H 0.14 4.00 8.00 -2.91 -0.02 3.98 16 34 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 35 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -66.32 326.99 4.74 -61.58 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 1.09 Total: 15.85 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 6.36 Total: 21.46 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -4.22 Total: -108.98 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.52 Total: -34.14 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -66.32 4.74 -61.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283203604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.552 kcal (2) G-P(sol) polarization free energy of solvation -66.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds