Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 119.99933 * 2 1 4 4 N 1.46501 * 109.47475 * 124.23719 * 3 2 1 5 5 C 1.46501 * 119.99928 * 94.43430 * 4 3 2 6 6 C 1.50700 * 109.47117 * 95.06041 * 5 4 3 7 7 H 1.08003 * 119.99516 * 0.02562 * 6 5 4 8 8 C 1.37869 * 119.99829 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00325 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99920 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46683 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47441 * 119.99904 * 10 8 6 13 13 H 1.48503 * 109.47022 * 240.00261 * 10 8 6 14 14 C 1.34775 * 119.99829 * 274.43754 * 4 3 2 15 15 O 1.21551 * 120.00113 * 5.16965 * 14 4 3 16 16 C 1.47884 * 119.99626 * 185.16819 * 14 4 3 17 17 C 1.41584 * 119.89354 * 185.94862 * 16 14 4 18 18 C 1.36330 * 118.23762 * 179.97438 * 17 16 14 19 19 C 1.41271 * 117.93217 * 0.02562 * 18 17 16 20 20 O 1.21979 * 120.21704 * 179.97438 * 19 18 17 21 21 N 1.34604 * 119.55393 * 359.97438 * 19 18 17 22 22 C 1.46502 * 119.10341 * 180.02562 * 21 19 18 23 23 N 1.28394 * 121.79866 * 359.74259 * 21 19 18 24 24 H 1.08001 * 119.99735 * 185.05881 * 1 2 3 25 25 H 1.07993 * 120.00001 * 5.05230 * 1 2 3 26 26 H 1.07997 * 119.99874 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47257 * 4.23715 * 3 2 1 28 28 H 1.09002 * 109.46972 * 244.24001 * 3 2 1 29 29 H 1.08997 * 109.47235 * 215.06404 * 5 4 3 30 30 H 1.09007 * 109.46723 * 335.06545 * 5 4 3 31 31 H 0.97000 * 119.99830 * 180.02562 * 9 8 6 32 32 H 1.08001 * 120.87941 * 359.95003 * 17 16 14 33 33 H 1.07997 * 121.02998 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.46402 * 94.97268 * 22 21 19 35 35 H 1.08994 * 109.47208 * 214.97715 * 22 21 19 36 36 H 1.09001 * 109.46344 * 334.97958 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9807 1.3395 1.1419 5 6 4.3753 0.9232 0.9740 6 6 5.2328 2.1340 0.7102 7 1 4.7838 3.1156 0.6719 8 6 6.5904 1.9889 0.5189 9 7 7.1370 0.7937 0.5662 10 14 7.6534 3.4899 0.1926 11 1 6.8030 4.7073 0.1887 12 1 8.6829 3.6081 1.2562 13 1 8.3192 3.3475 -1.1271 14 6 2.5415 1.7542 2.3467 15 8 1.3644 2.0098 2.5095 16 6 3.4918 1.8981 3.4706 17 6 3.0114 2.2112 4.7651 18 6 3.9170 2.3354 5.7766 19 6 5.2826 2.1442 5.4694 20 8 6.1283 2.2459 6.3425 21 7 5.6441 1.8489 4.2069 22 6 7.0629 1.6520 3.8994 23 7 4.7789 1.7298 3.2657 24 1 -0.5400 -0.9317 0.0825 25 1 -0.5400 0.9316 -0.0824 26 1 1.8500 -0.9353 0.0004 27 1 1.3577 2.1322 0.0759 28 1 2.6320 1.3964 -0.9256 29 1 4.7178 0.4261 1.8816 30 1 4.4501 0.2347 0.1323 31 1 8.0923 0.6916 0.4319 32 1 1.9556 2.3483 4.9464 33 1 3.6003 2.5727 6.7814 34 1 7.3002 0.5891 3.9446 35 1 7.2735 2.0292 2.8987 36 1 7.6702 2.1912 4.6264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292446323.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = 41.870152 kcal Electronic energy + Delta-G solvation = -22214.135391 eV Core-core repulsion = 18894.792332 eV Total energy + Delta-G solvation = -3319.343059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.59069 -39.17295 -37.20516 -35.66266 -34.32688 -33.61138 -32.31354 -30.88715 -27.98391 -27.50429 -25.96074 -24.35872 -23.19133 -22.91728 -20.31100 -19.25292 -17.98240 -16.98981 -16.67786 -16.35195 -16.10099 -15.69443 -15.33265 -14.61559 -14.46553 -14.02200 -13.62662 -13.34409 -13.02167 -12.91825 -12.76938 -12.44902 -12.15667 -12.04566 -11.76779 -11.40024 -11.12230 -10.91601 -10.88626 -10.50303 -10.20946 -10.02141 -9.84017 -9.62090 -9.12301 -8.88832 -8.60480 -8.08768 -7.85102 -6.24917 -4.23463 0.96938 1.62893 2.50852 2.69750 3.10698 3.22339 3.25964 3.32424 3.81171 4.06666 4.23270 4.49852 5.05949 5.08738 5.12283 5.24652 5.30267 5.50872 5.75157 5.83814 5.84867 6.00142 6.05920 6.10799 6.21217 6.26545 6.33306 6.41300 6.61791 6.89151 7.08128 7.25563 7.46315 7.68572 7.95568 8.02461 8.14883 8.52780 8.73816 8.84823 9.33978 10.81138 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.009544 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.981717 B = 2933.113188 C = 4685.893452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.146 3.854 4 N -0.576 5.576 5 C 0.235 3.765 6 C -0.493 4.493 7 H 0.058 0.942 8 C 0.067 3.933 9 N -0.883 5.883 10 Si 0.876 3.124 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.587 3.413 15 O -0.562 6.562 16 C -0.028 4.028 17 C -0.018 4.018 18 C -0.225 4.225 19 C 0.474 3.526 20 O -0.549 6.549 21 N -0.334 5.334 22 C 0.080 3.920 23 N -0.087 5.087 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 -0.621 2.068 5.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.181 4.181 3 C 0.023 3.977 4 N -0.305 5.305 5 C 0.115 3.885 6 C -0.533 4.533 7 H 0.076 0.924 8 C -0.136 4.136 9 N -0.522 5.522 10 Si 0.703 3.297 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.207 1.207 14 C 0.373 3.627 15 O -0.442 6.442 16 C -0.195 4.195 17 C -0.042 4.042 18 C -0.255 4.255 19 C 0.274 3.726 20 O -0.429 6.429 21 N -0.154 5.154 22 C -0.060 4.060 23 N 0.081 4.919 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.171 0.829 33 H 0.176 0.824 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.858 -0.721 1.990 5.299 hybrid contribution 0.394 0.948 0.426 1.111 sum -4.464 0.227 2.415 5.080 Atomic orbital electron populations 1.23723 0.95835 1.01413 1.01076 1.23355 0.96160 0.99209 0.99381 1.20442 0.92555 0.94944 0.89711 1.48150 1.13408 1.61633 1.07297 1.19869 0.74020 0.95956 0.98636 1.21406 0.92312 0.93582 1.46030 0.92424 1.24794 0.97578 0.95552 0.95639 1.69943 1.11961 1.21064 1.49271 0.86806 0.80762 0.83681 0.78427 1.19714 1.20655 1.20683 1.17219 0.85847 0.77662 0.81934 1.90705 1.16238 1.53929 1.83284 1.21712 0.90262 1.12004 0.95476 1.22156 1.02030 0.89195 0.90780 1.22418 0.91425 1.09883 1.01727 1.18199 0.91384 0.79986 0.82993 1.90891 1.53103 1.53619 1.45325 1.47072 1.09595 1.52826 1.05941 1.22294 0.74984 1.03801 1.04911 1.72802 1.00672 1.02442 1.15990 0.88990 0.88652 0.87526 0.90564 0.89239 0.92238 0.94616 0.92624 0.82939 0.82418 0.90047 0.87105 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 14.31 29.01 0.42 -2.07 16 2 C -0.16 -2.47 9.81 -36.03 -0.35 -2.82 16 3 C 0.15 2.49 5.74 -5.19 -0.03 2.46 16 4 N -0.58 -11.41 2.46 -177.53 -0.44 -11.85 16 5 C 0.23 5.14 4.72 -5.19 -0.02 5.11 16 6 C -0.49 -11.59 7.49 -34.44 -0.26 -11.85 16 7 H 0.06 1.43 7.81 -52.48 -0.41 1.02 16 8 C 0.07 1.57 3.88 -17.82 -0.07 1.50 16 9 N -0.88 -21.39 13.14 55.43 0.73 -20.66 16 10 Si 0.88 18.97 28.94 -169.99 -4.92 14.05 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 C 0.59 11.83 7.57 -12.31 -0.09 11.73 16 15 O -0.56 -11.71 16.11 5.32 0.09 -11.62 16 16 C -0.03 -0.55 6.66 -82.82 -0.55 -1.10 16 17 C -0.02 -0.28 9.67 -38.99 -0.38 -0.66 16 18 C -0.23 -3.60 10.11 -39.12 -0.40 -4.00 16 19 C 0.47 9.02 7.47 -15.18 -0.11 8.91 16 20 O -0.55 -11.47 16.54 4.94 0.08 -11.39 16 21 N -0.33 -6.52 3.62 -70.15 -0.25 -6.77 16 22 C 0.08 1.47 10.66 59.85 0.64 2.10 16 23 N -0.09 -1.77 5.38 33.42 0.18 -1.59 16 24 H 0.09 1.09 8.06 -52.49 -0.42 0.66 16 25 H 0.10 1.26 7.85 -52.49 -0.41 0.84 16 26 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.08 1.28 7.30 -51.93 -0.38 0.91 16 28 H 0.09 1.46 8.04 -51.93 -0.42 1.05 16 29 H 0.06 1.38 5.72 -51.93 -0.30 1.09 16 30 H 0.04 0.82 8.03 -51.92 -0.42 0.40 16 31 H 0.26 6.15 8.31 -40.82 -0.34 5.81 16 32 H 0.15 2.12 7.73 -52.49 -0.41 1.72 16 33 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.11 2.23 5.57 -51.93 -0.29 1.94 16 36 H 0.09 1.51 7.21 -51.93 -0.37 1.14 16 LS Contribution 311.51 15.07 4.69 4.69 Total: -1.00 -27.14 311.51 -5.28 -32.42 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -4.23 Total: 3.39 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -1.21 Total: 9.33 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.22 Total: -40.87 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.17 Total: -23.01 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.92 Total: 14.05 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.14 -5.28 -32.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292446323.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.294 kcal (2) G-P(sol) polarization free energy of solvation -27.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds