Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 119.99933 * 2 1 4 4 N 1.46501 * 109.47475 * 124.23719 * 3 2 1 5 5 C 1.46501 * 119.99928 * 94.43430 * 4 3 2 6 6 C 1.50700 * 109.47117 * 95.06041 * 5 4 3 7 7 H 1.08003 * 119.99516 * 0.02562 * 6 5 4 8 8 C 1.37869 * 119.99829 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00325 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99920 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46683 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47441 * 119.99904 * 10 8 6 13 13 H 1.48503 * 109.47022 * 240.00261 * 10 8 6 14 14 C 1.34775 * 119.99829 * 274.43754 * 4 3 2 15 15 O 1.21551 * 120.00113 * 5.16965 * 14 4 3 16 16 C 1.47884 * 119.99626 * 185.16819 * 14 4 3 17 17 C 1.41584 * 119.89354 * 185.94862 * 16 14 4 18 18 C 1.36330 * 118.23762 * 179.97438 * 17 16 14 19 19 C 1.41271 * 117.93217 * 0.02562 * 18 17 16 20 20 O 1.21979 * 120.21704 * 179.97438 * 19 18 17 21 21 N 1.34604 * 119.55393 * 359.97438 * 19 18 17 22 22 C 1.46502 * 119.10341 * 180.02562 * 21 19 18 23 23 N 1.28394 * 121.79866 * 359.74259 * 21 19 18 24 24 H 1.08001 * 119.99735 * 185.05881 * 1 2 3 25 25 H 1.07993 * 120.00001 * 5.05230 * 1 2 3 26 26 H 1.07997 * 119.99874 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47257 * 4.23715 * 3 2 1 28 28 H 1.09002 * 109.46972 * 244.24001 * 3 2 1 29 29 H 1.08997 * 109.47235 * 215.06404 * 5 4 3 30 30 H 1.09007 * 109.46723 * 335.06545 * 5 4 3 31 31 H 0.97000 * 119.99830 * 180.02562 * 9 8 6 32 32 H 1.08001 * 120.87941 * 359.95003 * 17 16 14 33 33 H 1.07997 * 121.02998 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.46402 * 94.97268 * 22 21 19 35 35 H 1.08994 * 109.47208 * 214.97715 * 22 21 19 36 36 H 1.09001 * 109.46344 * 334.97958 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9807 1.3395 1.1419 5 6 4.3753 0.9232 0.9740 6 6 5.2328 2.1340 0.7102 7 1 4.7838 3.1156 0.6719 8 6 6.5904 1.9889 0.5189 9 7 7.1370 0.7937 0.5662 10 14 7.6534 3.4899 0.1926 11 1 6.8030 4.7073 0.1887 12 1 8.6829 3.6081 1.2562 13 1 8.3192 3.3475 -1.1271 14 6 2.5415 1.7542 2.3467 15 8 1.3644 2.0098 2.5095 16 6 3.4918 1.8981 3.4706 17 6 3.0114 2.2112 4.7651 18 6 3.9170 2.3354 5.7766 19 6 5.2826 2.1442 5.4694 20 8 6.1283 2.2459 6.3425 21 7 5.6441 1.8489 4.2069 22 6 7.0629 1.6520 3.8994 23 7 4.7789 1.7298 3.2657 24 1 -0.5400 -0.9317 0.0825 25 1 -0.5400 0.9316 -0.0824 26 1 1.8500 -0.9353 0.0004 27 1 1.3577 2.1322 0.0759 28 1 2.6320 1.3964 -0.9256 29 1 4.7178 0.4261 1.8816 30 1 4.4501 0.2347 0.1323 31 1 8.0923 0.6916 0.4319 32 1 1.9556 2.3483 4.9464 33 1 3.6003 2.5727 6.7814 34 1 7.3002 0.5891 3.9446 35 1 7.2735 2.0292 2.8987 36 1 7.6702 2.1912 4.6264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292446323.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = 26.342919 kcal Electronic energy + Delta-G solvation = -22214.808702 eV Core-core repulsion = 18894.792332 eV Total energy + Delta-G solvation = -3320.016370 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.07184 -40.72764 -38.73335 -37.18246 -35.76593 -35.11799 -33.91396 -32.33233 -29.44311 -29.21899 -27.38557 -25.83571 -24.82895 -24.43749 -21.72328 -20.55927 -19.46790 -18.58676 -18.35683 -17.83813 -17.63461 -17.17191 -16.85859 -16.27702 -16.00619 -15.32060 -15.06618 -14.76336 -14.47965 -14.30366 -14.23262 -14.16751 -13.67705 -13.57759 -13.28818 -13.01305 -12.62575 -12.58110 -12.26759 -12.13449 -11.85323 -11.60260 -11.38129 -11.20519 -10.55227 -10.40352 -10.17518 -9.61578 -9.43812 -8.07432 -6.11235 -0.40301 0.14664 1.21163 1.35147 1.37008 1.45398 1.50671 1.80430 2.32942 2.45898 2.59397 3.04062 3.24866 3.67192 3.77760 3.83645 4.11133 4.27351 4.34500 4.38700 4.55932 4.66552 4.68636 4.76762 4.85959 4.94021 4.96660 5.03563 5.11031 5.44972 5.75149 5.76632 5.85547 5.93095 6.21441 6.47279 6.52641 6.88761 7.06415 7.25650 7.50420 8.98598 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.009544 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.981717 B = 2933.113188 C = 4685.893452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C 0.144 3.856 4 N -0.579 5.579 5 C 0.252 3.748 6 C -0.498 4.498 7 H 0.041 0.959 8 C 0.046 3.954 9 N -0.902 5.902 10 Si 0.915 3.085 11 H -0.282 1.282 12 H -0.273 1.273 13 H -0.282 1.282 14 C 0.583 3.417 15 O -0.569 6.569 16 C -0.030 4.030 17 C -0.013 4.013 18 C -0.205 4.205 19 C 0.464 3.536 20 O -0.572 6.572 21 N -0.339 5.339 22 C 0.083 3.917 23 N -0.114 5.114 24 H 0.114 0.886 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.021 0.979 31 H 0.265 0.735 32 H 0.181 0.819 33 H 0.194 0.806 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 -0.434 2.931 7.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.203 4.203 3 C 0.022 3.978 4 N -0.308 5.308 5 C 0.132 3.868 6 C -0.538 4.538 7 H 0.059 0.941 8 C -0.155 4.155 9 N -0.542 5.542 10 Si 0.742 3.258 11 H -0.207 1.207 12 H -0.199 1.199 13 H -0.208 1.208 14 C 0.369 3.631 15 O -0.449 6.449 16 C -0.198 4.198 17 C -0.037 4.037 18 C -0.234 4.234 19 C 0.265 3.735 20 O -0.455 6.455 21 N -0.159 5.159 22 C -0.057 4.057 23 N 0.054 4.946 24 H 0.133 0.867 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.199 0.801 33 H 0.211 0.789 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.156 -0.538 2.823 6.794 hybrid contribution 0.694 0.893 0.182 1.145 sum -5.462 0.355 3.005 6.245 Atomic orbital electron populations 1.23957 0.95186 1.02736 0.98008 1.23210 0.96763 0.98140 1.02185 1.20562 0.92290 0.96205 0.88772 1.48187 1.13049 1.61357 1.08165 1.19494 0.74982 0.94959 0.97391 1.21344 0.92688 0.93166 1.46622 0.94115 1.25103 0.98105 0.96818 0.95490 1.69986 1.12159 1.21937 1.50081 0.86210 0.79771 0.81505 0.78302 1.20707 1.19881 1.20795 1.17384 0.85987 0.77543 0.82173 1.90687 1.16401 1.54383 1.83458 1.21952 0.89988 1.11222 0.96602 1.22338 1.03435 0.88723 0.89193 1.22731 0.89549 1.07848 1.03232 1.18689 0.92530 0.79766 0.82465 1.90881 1.53926 1.54914 1.45750 1.47131 1.09695 1.52894 1.06202 1.22261 0.75050 1.04260 1.04152 1.72736 1.01386 1.03630 1.16816 0.86745 0.88115 0.87627 0.90435 0.89303 0.93342 0.96072 0.92506 0.80124 0.78867 0.89497 0.88901 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 14.31 67.77 0.97 -3.04 16 2 C -0.18 -5.41 9.81 25.64 0.25 -5.16 16 3 C 0.14 4.84 5.74 85.63 0.49 5.33 16 4 N -0.58 -22.89 2.46 -833.86 -2.05 -24.94 16 5 C 0.25 11.19 4.72 85.63 0.40 11.60 16 6 C -0.50 -23.74 7.49 25.60 0.19 -23.55 16 7 H 0.04 2.05 7.81 -2.91 -0.02 2.03 16 8 C 0.05 2.17 3.88 84.65 0.33 2.49 16 9 N -0.90 -44.03 13.14 21.44 0.28 -43.75 16 10 Si 0.91 38.99 28.94 68.60 1.99 40.98 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 13 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 14 C 0.58 22.93 7.57 86.80 0.66 23.58 16 15 O -0.57 -22.72 16.11 -3.88 -0.06 -22.78 16 16 C -0.03 -1.13 6.66 42.59 0.28 -0.84 16 17 C -0.01 -0.40 9.67 22.65 0.22 -0.18 16 18 C -0.20 -5.93 10.11 22.57 0.23 -5.70 16 19 C 0.46 16.93 7.47 85.01 0.63 17.56 16 20 O -0.57 -23.11 16.54 -5.25 -0.09 -23.20 16 21 N -0.34 -13.05 3.62 -494.06 -1.79 -14.84 16 22 C 0.08 3.02 10.66 127.77 1.36 4.39 16 23 N -0.11 -4.62 5.38 -48.19 -0.26 -4.88 16 24 H 0.11 2.34 8.06 -2.91 -0.02 2.32 16 25 H 0.10 2.40 7.85 -2.91 -0.02 2.38 16 26 H 0.11 3.11 8.06 -2.91 -0.02 3.08 16 27 H 0.08 2.56 7.30 -2.39 -0.02 2.54 16 28 H 0.09 2.93 8.04 -2.39 -0.02 2.91 16 29 H 0.05 2.30 5.72 -2.39 -0.01 2.28 16 30 H 0.02 0.99 8.03 -2.38 -0.02 0.98 16 31 H 0.27 12.42 8.31 -92.71 -0.77 11.65 16 32 H 0.18 4.34 7.73 -2.91 -0.02 4.32 16 33 H 0.19 4.19 8.06 -2.91 -0.02 4.16 16 34 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.09 3.76 5.57 -2.39 -0.01 3.75 16 36 H 0.10 3.38 7.21 -2.39 -0.02 3.36 16 Total: -1.00 -56.80 311.51 5.13 -51.66 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 1.09 Total: 15.27 kcal Atomic # 6 Polarization: 20.47 SS G_CDS: 6.02 Total: 26.49 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -3.82 Total: -88.42 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -0.15 Total: -45.98 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.99 Total: 40.98 kcal Total: -56.80 5.13 -51.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292446323.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.006 kcal (2) G-P(sol) polarization free energy of solvation -56.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds