Wall clock time and date at job start Mon Mar 30 2020 02:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99799 * 2 1 4 4 N 1.46494 * 109.47118 * 123.18818 * 3 2 1 5 5 C 1.46504 * 120.00198 * 54.42962 * 4 3 2 6 6 C 1.50705 * 109.47047 * 89.99937 * 5 4 3 7 7 H 1.08000 * 119.99623 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99737 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99735 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00272 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47010 * 90.00040 * 10 8 6 12 12 H 1.48502 * 109.46760 * 209.99889 * 10 8 6 13 13 H 1.48498 * 109.46921 * 329.99897 * 10 8 6 14 14 C 1.34776 * 120.00089 * 234.15328 * 4 3 2 15 15 O 1.21515 * 120.00524 * 182.19111 * 14 4 3 16 16 C 1.48137 * 119.99742 * 2.18979 * 14 4 3 17 17 C 1.39284 * 120.05493 * 101.08080 * 16 14 4 18 18 N 1.32165 * 120.01775 * 180.02562 * 17 16 14 19 19 C 1.31973 * 120.13997 * 359.97438 * 18 17 16 20 20 C 1.39443 * 120.12214 * 0.02562 * 19 18 17 21 21 O 1.35669 * 120.01367 * 179.97438 * 20 19 18 22 22 C 1.42904 * 117.00015 * 185.31704 * 21 20 19 23 23 N 1.32190 * 119.97601 * 359.71817 * 20 19 18 24 24 H 1.08000 * 119.99686 * 174.84430 * 1 2 3 25 25 H 1.07999 * 120.00151 * 354.84763 * 1 2 3 26 26 H 1.07996 * 120.00009 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46845 * 3.18886 * 3 2 1 28 28 H 1.08994 * 109.46810 * 243.18783 * 3 2 1 29 29 H 1.08991 * 109.47249 * 209.99758 * 5 4 3 30 30 H 1.09000 * 109.47024 * 330.00002 * 5 4 3 31 31 H 0.96999 * 120.00152 * 179.97438 * 9 8 6 32 32 H 1.08005 * 119.99370 * 359.97438 * 17 16 14 33 33 H 1.08004 * 119.93984 * 179.97438 * 19 18 17 34 34 H 1.09003 * 109.47024 * 64.39131 * 22 21 20 35 35 H 1.08995 * 109.46689 * 184.39174 * 22 21 20 36 36 H 1.09001 * 109.47221 * 304.39088 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9624 1.3501 1.1559 5 6 3.9286 0.2708 1.3748 6 6 5.2211 0.6040 0.6751 7 1 5.3136 1.5275 0.1229 8 6 6.2852 -0.2702 0.7399 9 7 7.4130 0.0204 0.1288 10 14 6.1249 -1.8678 1.6944 11 1 5.6236 -2.9353 0.7920 12 1 7.4526 -2.2580 2.2330 13 1 5.1710 -1.6801 2.8169 14 6 2.9044 2.3870 2.0148 15 8 3.6767 2.4444 2.9512 16 6 1.8990 3.4570 1.8173 17 6 0.7359 3.4713 2.5835 18 7 -0.1608 4.4260 2.4063 19 6 0.0432 5.3676 1.5044 20 6 1.2055 5.3588 0.7341 21 8 1.4127 6.3276 -0.1928 22 6 2.5660 6.1926 -1.0257 23 7 2.1079 4.4091 0.9109 24 1 -0.5399 -0.9316 -0.0841 25 1 -0.5400 0.9315 0.0840 26 1 1.8500 -0.9353 0.0004 27 1 1.3565 2.1328 0.0572 28 1 2.6465 1.3880 -0.9171 29 1 4.1123 0.1589 2.4433 30 1 3.5289 -0.6613 0.9753 31 1 8.1619 -0.5944 0.1746 32 1 0.5664 2.7017 3.3220 33 1 -0.6920 6.1459 1.3620 34 1 2.4658 5.2999 -1.6432 35 1 2.6559 7.0696 -1.6667 36 1 3.4560 6.1053 -0.4025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292502938.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:11 Heat of formation + Delta-G solvation = -11.647622 kcal Electronic energy + Delta-G solvation = -21484.656101 eV Core-core repulsion = 18162.992338 eV Total energy + Delta-G solvation = -3321.663764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.64800 -40.75929 -39.37673 -37.54566 -35.42728 -35.00716 -33.86628 -32.50144 -30.39526 -28.67623 -27.31518 -26.49869 -24.96558 -24.35104 -21.52353 -20.59110 -19.49846 -19.26541 -19.06733 -18.02049 -17.94288 -17.53951 -17.18455 -16.55762 -16.00848 -15.75965 -15.40571 -15.17711 -14.91889 -14.48179 -14.30597 -14.15944 -13.70667 -13.26086 -13.19807 -13.08625 -12.79241 -12.63783 -12.48566 -12.23546 -12.06008 -12.01091 -11.79928 -11.57737 -10.82899 -10.50112 -10.34106 -9.93345 -9.64834 -8.35051 -6.41350 -0.58573 -0.13052 1.17933 1.20217 1.32429 1.37497 1.47797 1.85101 1.99200 2.30814 2.35793 2.89193 2.99481 3.07755 3.27639 3.55443 3.77214 4.00092 4.02282 4.27780 4.32049 4.37778 4.43357 4.60511 4.67520 4.70492 4.83818 4.90244 5.00648 5.35758 5.42253 5.64726 5.73045 5.80030 5.90796 6.17235 6.35596 6.44584 6.59725 6.95321 7.22845 8.82174 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019114 B = 0.005556 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.528905 B = 5038.386157 C = 5496.212507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.189 4.189 3 C 0.144 3.856 4 N -0.574 5.574 5 C 0.225 3.775 6 C -0.540 4.540 7 H 0.024 0.976 8 C 0.013 3.987 9 N -0.945 5.945 10 Si 0.947 3.053 11 H -0.248 1.248 12 H -0.282 1.282 13 H -0.250 1.250 14 C 0.564 3.436 15 O -0.567 6.567 16 C 0.084 3.916 17 C 0.049 3.951 18 N -0.399 5.399 19 C 0.076 3.924 20 C 0.271 3.729 21 O -0.293 6.293 22 C 0.033 3.967 23 N -0.497 5.497 24 H 0.125 0.875 25 H 0.104 0.896 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.060 0.940 31 H 0.269 0.731 32 H 0.193 0.807 33 H 0.224 0.776 34 H 0.056 0.944 35 H 0.137 0.863 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.909 6.569 -1.485 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.208 4.208 3 C 0.023 3.977 4 N -0.303 5.303 5 C 0.104 3.896 6 C -0.578 4.578 7 H 0.043 0.957 8 C -0.186 4.186 9 N -0.585 5.585 10 Si 0.769 3.231 11 H -0.172 1.172 12 H -0.207 1.207 13 H -0.173 1.173 14 C 0.349 3.651 15 O -0.446 6.446 16 C -0.056 4.056 17 C -0.108 4.108 18 N -0.113 5.113 19 C -0.090 4.090 20 C 0.085 3.915 21 O -0.198 6.198 22 C -0.062 4.062 23 N -0.230 5.230 24 H 0.143 0.857 25 H 0.122 0.878 26 H 0.131 0.869 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.210 0.790 33 H 0.240 0.760 34 H 0.075 0.925 35 H 0.155 0.845 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.435 6.720 -1.114 20.594 hybrid contribution 1.469 -0.558 -0.042 1.572 sum -17.966 6.162 -1.157 19.028 Atomic orbital electron populations 1.24041 0.94445 1.03392 0.96897 1.23095 0.96889 0.97706 1.03074 1.20710 0.91526 0.97266 0.88246 1.47916 1.35771 1.21909 1.24710 1.19475 0.86654 0.86602 0.96872 1.21482 0.97952 1.05715 1.32681 0.95733 1.25862 0.94198 1.02527 0.95963 1.70056 1.04385 1.38985 1.45047 0.85725 0.78562 0.78876 0.79967 1.17246 1.20738 1.17344 1.18207 0.82719 0.81713 0.82457 1.90773 1.42336 1.77721 1.33726 1.21526 0.95487 0.94168 0.94372 1.23633 0.88971 0.98894 0.99255 1.68679 1.27751 1.00663 1.14163 1.23803 0.95229 0.98924 0.91032 1.21334 0.91458 0.87901 0.90766 1.86274 1.47234 1.41748 1.44498 1.23144 0.85358 1.04751 0.92981 1.67969 1.31071 1.04045 1.19873 0.85691 0.87808 0.86888 0.89861 0.91571 0.95258 0.92206 0.92188 0.78982 0.75992 0.92511 0.84487 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 14.32 67.78 0.97 -2.03 16 2 C -0.19 -5.12 9.12 25.65 0.23 -4.89 16 3 C 0.14 4.81 6.29 85.64 0.54 5.35 16 4 N -0.57 -24.34 2.64 -833.61 -2.20 -26.54 16 5 C 0.23 10.95 4.07 85.63 0.35 11.30 16 6 C -0.54 -32.11 9.94 25.60 0.25 -31.86 16 7 H 0.02 1.66 8.06 -2.91 -0.02 1.63 16 8 C 0.01 0.75 5.47 84.65 0.46 1.21 16 9 N -0.94 -59.98 13.96 21.45 0.30 -59.68 16 10 Si 0.95 43.65 27.47 68.60 1.88 45.54 16 11 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 14 C 0.56 24.55 7.31 86.87 0.64 25.19 16 15 O -0.57 -29.72 16.70 -3.76 -0.06 -29.78 16 16 C 0.08 2.87 4.46 41.83 0.19 3.06 16 17 C 0.05 1.31 10.95 84.89 0.93 2.24 16 18 N -0.40 -9.14 10.48 -193.72 -2.03 -11.17 16 19 C 0.08 1.50 11.18 84.96 0.95 2.45 16 20 C 0.27 6.86 7.49 84.93 0.64 7.50 16 21 O -0.29 -6.48 10.49 -89.86 -0.94 -7.43 16 22 C 0.03 0.67 10.50 113.37 1.19 1.86 16 23 N -0.50 -16.39 9.05 -297.47 -2.69 -19.08 16 24 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 25 H 0.10 1.85 7.84 -2.91 -0.02 1.83 16 26 H 0.11 3.20 6.91 -2.91 -0.02 3.18 16 27 H 0.08 2.46 5.73 -2.39 -0.01 2.45 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.03 1.52 6.52 -2.39 -0.02 1.50 16 30 H 0.06 2.59 5.81 -2.39 -0.01 2.57 16 31 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 32 H 0.19 4.39 8.06 -2.91 -0.02 4.36 16 33 H 0.22 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.04 1.14 7.91 -2.39 -0.02 1.12 16 Total: -1.00 -78.19 318.32 2.63 -75.55 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.04 Total: 11.21 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 7.34 Total: 21.38 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -6.62 Total: -116.48 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.01 Total: -37.21 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.54 kcal Total: -78.19 2.63 -75.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292502938.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.907 kcal (2) G-P(sol) polarization free energy of solvation -78.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds