Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46499 * 119.99805 * 2 1 4 4 C 1.34773 * 120.00544 * 180.02562 * 2 1 3 5 5 O 1.21592 * 120.00046 * 5.06671 * 4 2 1 6 6 N 1.34775 * 120.00504 * 185.06965 * 4 2 1 7 7 N 1.40096 * 120.00281 * 184.96607 * 6 4 2 8 8 C 1.34780 * 120.00376 * 174.92387 * 7 6 4 9 9 O 1.21554 * 119.99663 * 359.97438 * 8 7 6 10 10 C 1.47882 * 120.00386 * 180.02562 * 8 7 6 11 11 C 1.39919 * 120.02551 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.36020 * 180.02562 * 11 10 8 13 13 C 1.37747 * 120.41127 * 359.97438 * 12 11 10 14 14 C 1.40749 * 120.04100 * 0.03685 * 13 12 11 15 15 C 1.41440 * 120.17647 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00566 * 29.87438 * 15 14 13 17 17 C 1.39939 * 119.99544 * 209.87884 * 15 14 13 18 18 N 1.30827 * 120.00166 * 10.61739 * 17 15 14 19 19 Si 1.86798 * 119.99916 * 190.61877 * 17 15 14 20 20 H 1.48505 * 109.47002 * 94.99507 * 19 17 15 21 21 H 1.48502 * 109.47126 * 214.99465 * 19 17 15 22 22 H 1.48500 * 109.46974 * 334.99082 * 19 17 15 23 23 C 1.38993 * 120.02851 * 179.97438 * 10 8 7 24 24 H 1.09000 * 109.47536 * 269.99412 * 1 2 3 25 25 H 1.09000 * 109.47693 * 30.00197 * 1 2 3 26 26 H 1.09003 * 109.46928 * 150.00003 * 1 2 3 27 27 H 1.08999 * 109.47288 * 272.45693 * 3 2 1 28 28 H 1.08999 * 109.47273 * 32.45831 * 3 2 1 29 29 H 1.09005 * 109.47402 * 152.45656 * 3 2 1 30 30 H 0.96998 * 119.99794 * 4.96588 * 6 4 2 31 31 H 0.97003 * 120.00276 * 354.91668 * 7 6 4 32 32 H 1.08010 * 119.81842 * 359.97438 * 11 10 8 33 33 H 1.08003 * 119.79347 * 179.97438 * 12 11 10 34 34 H 1.08003 * 119.98111 * 180.02562 * 13 12 11 35 35 H 0.97003 * 120.00500 * 180.02562 * 18 17 15 36 36 H 1.08007 * 120.19783 * 359.69874 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5346 -2.2181 -0.0940 6 7 3.4827 -1.1694 0.1026 7 7 4.1913 -2.3734 -0.0023 8 6 5.5390 -2.3645 -0.0019 9 8 6.1398 -1.3117 0.0891 10 6 6.2870 -3.6353 -0.1133 11 6 5.5961 -4.8475 -0.2186 12 6 6.2887 -6.0403 -0.3226 13 6 7.6661 -6.0489 -0.3242 14 6 8.3785 -4.8395 -0.2189 15 6 9.7929 -4.8450 -0.2208 16 1 10.3292 -5.6142 -0.7564 17 6 10.4972 -3.8536 0.4715 18 7 9.8640 -3.0492 1.2861 19 14 12.3416 -3.6787 0.2325 20 1 12.6111 -2.6489 -0.8029 21 1 12.9701 -3.2687 1.5139 22 1 12.9097 -4.9797 -0.2035 23 6 7.6769 -3.6267 -0.1134 24 1 -0.3634 -0.0001 1.0276 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 2.3409 1.6055 -1.0267 28 1 1.6281 2.0170 0.5515 29 1 3.1682 1.1279 0.4752 30 1 3.9592 -0.3374 0.2495 31 1 3.7119 -3.2136 -0.0752 32 1 4.5160 -4.8518 -0.2179 33 1 5.7461 -6.9707 -0.4030 34 1 8.1999 -6.9842 -0.4061 35 1 10.3522 -2.3617 1.7657 36 1 8.2144 -2.6929 -0.0372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299411000.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = 0.256638 kcal Electronic energy + Delta-G solvation = -20686.802990 eV Core-core repulsion = 17365.655434 eV Total energy + Delta-G solvation = -3321.147556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46841 -39.04304 -37.13530 -35.78249 -35.01985 -33.75197 -31.50516 -29.71856 -29.47895 -28.06347 -25.99900 -25.27390 -22.78909 -21.15346 -20.85229 -19.85608 -18.32611 -17.64441 -17.31456 -16.18091 -15.86977 -15.58636 -15.08863 -14.68434 -14.51779 -14.09116 -13.93266 -13.52272 -13.25261 -12.91268 -12.85597 -12.77042 -12.57165 -12.22953 -11.73009 -11.24727 -11.16430 -11.01033 -10.75401 -10.53064 -10.40702 -10.12216 -9.74368 -9.33548 -9.28044 -9.00460 -8.08960 -7.66181 -7.52737 -6.77679 -4.47013 1.82241 2.04890 2.76863 2.99236 3.07211 3.10240 3.12156 3.21813 3.73590 3.91555 4.48594 4.61597 4.78038 4.94794 5.07010 5.35152 5.36931 5.48445 5.52231 5.61573 6.01113 6.11293 6.21848 6.45217 6.66134 6.86886 6.94355 7.00282 7.17334 7.30613 7.37586 7.63149 7.71645 7.87069 7.99858 8.11540 8.31495 8.45088 8.76952 8.78282 8.85106 10.17274 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.003855 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.815127 B = 7261.270820 C = 8147.662324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.634 5.634 3 C 0.077 3.923 4 C 0.708 3.292 5 O -0.589 6.589 6 N -0.538 5.538 7 N -0.516 5.516 8 C 0.569 3.431 9 O -0.548 6.548 10 C -0.122 4.122 11 C -0.210 4.210 12 C -0.099 4.099 13 C -0.201 4.201 14 C 0.099 3.901 15 C -0.461 4.461 16 H 0.081 0.919 17 C 0.071 3.929 18 N -0.794 5.794 19 Si 0.914 3.086 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.079 4.079 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.425 0.575 31 H 0.431 0.569 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.283 0.717 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.777 7.348 -1.352 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.374 5.374 3 C -0.066 4.066 4 C 0.409 3.591 5 O -0.467 6.467 6 N -0.289 5.289 7 N -0.268 5.268 8 C 0.360 3.640 9 O -0.425 6.425 10 C -0.127 4.127 11 C -0.231 4.231 12 C -0.117 4.117 13 C -0.221 4.221 14 C 0.096 3.904 15 C -0.491 4.491 16 H 0.100 0.900 17 C -0.147 4.147 18 N -0.419 5.419 19 Si 0.739 3.261 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.099 4.099 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.269 0.731 31 H 0.275 0.725 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.746 7.560 -1.188 14.019 hybrid contribution 0.733 0.277 0.139 0.796 sum -11.012 7.837 -1.048 13.557 Atomic orbital electron populations 1.21542 0.77146 1.03317 1.01790 1.46731 1.07110 1.04382 1.79140 1.21807 0.96954 0.85550 1.02336 1.15505 0.80399 0.84468 0.78753 1.90929 1.67459 1.29943 1.58352 1.43675 1.03358 1.03627 1.78278 1.44979 1.04214 0.99941 1.77645 1.19106 0.78840 0.90909 0.75186 1.90706 1.68019 1.32844 1.50881 1.19173 0.94311 0.89559 1.09670 1.20443 0.96895 0.92366 1.13351 1.20465 0.94420 0.95990 1.00806 1.21219 0.93196 0.97198 1.10490 1.17599 0.93640 0.90154 0.88989 1.19581 0.91009 1.10290 1.28220 0.90041 1.25941 1.01366 0.94159 0.93224 1.69752 1.38489 1.14785 1.18878 0.86197 0.81654 0.79654 0.78623 1.19321 1.20213 1.18587 1.21633 0.90150 0.99803 0.98326 0.92872 0.91087 0.90169 0.92059 0.90416 0.91288 0.73083 0.72513 0.88867 0.88509 0.88309 0.90551 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.89 10.49 59.84 0.63 1.52 16 2 N -0.63 -6.97 3.27 -195.34 -0.64 -7.61 16 3 C 0.08 0.58 10.41 59.85 0.62 1.21 16 4 C 0.71 10.81 8.39 -86.92 -0.73 10.08 16 5 O -0.59 -10.78 15.75 5.28 0.08 -10.70 16 6 N -0.54 -8.58 6.13 27.63 0.17 -8.41 16 7 N -0.52 -9.50 6.21 30.54 0.19 -9.31 16 8 C 0.57 12.36 7.89 -12.31 -0.10 12.26 16 9 O -0.55 -13.07 16.18 5.32 0.09 -12.98 16 10 C -0.12 -2.85 5.87 -105.04 -0.62 -3.46 16 11 C -0.21 -4.43 9.55 -38.92 -0.37 -4.80 16 12 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 13 C -0.20 -4.67 9.78 -38.81 -0.38 -5.05 16 14 C 0.10 2.55 5.53 -106.87 -0.59 1.96 16 15 C -0.46 -11.89 9.06 -37.73 -0.34 -12.23 16 16 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 17 C 0.07 1.76 5.25 -17.34 -0.09 1.67 16 18 N -0.79 -20.69 10.92 55.55 0.61 -20.08 16 19 Si 0.91 18.56 29.57 -169.99 -5.03 13.54 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 23 C -0.08 -2.05 8.18 -38.45 -0.31 -2.36 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 26 H 0.08 0.80 7.36 -51.93 -0.38 0.42 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.07 0.55 6.01 -51.93 -0.31 0.23 16 30 H 0.43 6.18 5.61 -182.60 -1.03 5.16 16 31 H 0.43 7.63 6.03 -182.60 -1.10 6.53 16 32 H 0.09 1.69 6.38 -52.48 -0.33 1.36 16 33 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 35 H 0.28 6.79 8.30 -40.82 -0.34 6.46 16 36 H 0.14 3.80 5.90 -52.48 -0.31 3.49 16 LS Contribution 311.76 15.07 4.70 4.70 Total: -1.00 -31.26 311.76 -8.05 -39.32 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -5.54 Total: 13.22 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.68 Total: -1.68 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.33 Total: -45.41 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.17 Total: -23.68 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.26 -8.05 -39.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299411000.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.572 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds