Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46499 * 119.99805 * 2 1 4 4 C 1.34773 * 120.00544 * 180.02562 * 2 1 3 5 5 O 1.21592 * 120.00046 * 5.06671 * 4 2 1 6 6 N 1.34775 * 120.00504 * 185.06965 * 4 2 1 7 7 N 1.40096 * 120.00281 * 184.96607 * 6 4 2 8 8 C 1.34780 * 120.00376 * 174.92387 * 7 6 4 9 9 O 1.21554 * 119.99663 * 359.97438 * 8 7 6 10 10 C 1.47882 * 120.00386 * 180.02562 * 8 7 6 11 11 C 1.39919 * 120.02551 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.36020 * 180.02562 * 11 10 8 13 13 C 1.37747 * 120.41127 * 359.97438 * 12 11 10 14 14 C 1.40749 * 120.04100 * 0.03685 * 13 12 11 15 15 C 1.41440 * 120.17647 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00566 * 29.87438 * 15 14 13 17 17 C 1.39939 * 119.99544 * 209.87884 * 15 14 13 18 18 N 1.30827 * 120.00166 * 10.61739 * 17 15 14 19 19 Si 1.86798 * 119.99916 * 190.61877 * 17 15 14 20 20 H 1.48505 * 109.47002 * 94.99507 * 19 17 15 21 21 H 1.48502 * 109.47126 * 214.99465 * 19 17 15 22 22 H 1.48500 * 109.46974 * 334.99082 * 19 17 15 23 23 C 1.38993 * 120.02851 * 179.97438 * 10 8 7 24 24 H 1.09000 * 109.47536 * 269.99412 * 1 2 3 25 25 H 1.09000 * 109.47693 * 30.00197 * 1 2 3 26 26 H 1.09003 * 109.46928 * 150.00003 * 1 2 3 27 27 H 1.08999 * 109.47288 * 272.45693 * 3 2 1 28 28 H 1.08999 * 109.47273 * 32.45831 * 3 2 1 29 29 H 1.09005 * 109.47402 * 152.45656 * 3 2 1 30 30 H 0.96998 * 119.99794 * 4.96588 * 6 4 2 31 31 H 0.97003 * 120.00276 * 354.91668 * 7 6 4 32 32 H 1.08010 * 119.81842 * 359.97438 * 11 10 8 33 33 H 1.08003 * 119.79347 * 179.97438 * 12 11 10 34 34 H 1.08003 * 119.98111 * 180.02562 * 13 12 11 35 35 H 0.97003 * 120.00500 * 180.02562 * 18 17 15 36 36 H 1.08007 * 120.19783 * 359.69874 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5346 -2.2181 -0.0940 6 7 3.4827 -1.1694 0.1026 7 7 4.1913 -2.3734 -0.0023 8 6 5.5390 -2.3645 -0.0019 9 8 6.1398 -1.3117 0.0891 10 6 6.2870 -3.6353 -0.1133 11 6 5.5961 -4.8475 -0.2186 12 6 6.2887 -6.0403 -0.3226 13 6 7.6661 -6.0489 -0.3242 14 6 8.3785 -4.8395 -0.2189 15 6 9.7929 -4.8450 -0.2208 16 1 10.3292 -5.6142 -0.7564 17 6 10.4972 -3.8536 0.4715 18 7 9.8640 -3.0492 1.2861 19 14 12.3416 -3.6787 0.2325 20 1 12.6111 -2.6489 -0.8029 21 1 12.9701 -3.2687 1.5139 22 1 12.9097 -4.9797 -0.2035 23 6 7.6769 -3.6267 -0.1134 24 1 -0.3634 -0.0001 1.0276 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 2.3409 1.6055 -1.0267 28 1 1.6281 2.0170 0.5515 29 1 3.1682 1.1279 0.4752 30 1 3.9592 -0.3374 0.2495 31 1 3.7119 -3.2136 -0.0752 32 1 4.5160 -4.8518 -0.2179 33 1 5.7461 -6.9707 -0.4030 34 1 8.1999 -6.9842 -0.4061 35 1 10.3522 -2.3617 1.7657 36 1 8.2144 -2.6929 -0.0372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299411000.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = -20.862591 kcal Electronic energy + Delta-G solvation = -20687.718789 eV Core-core repulsion = 17365.655434 eV Total energy + Delta-G solvation = -3322.063355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.76929 -40.60372 -38.89349 -36.87021 -36.43728 -35.57600 -33.07327 -31.41343 -31.20223 -28.80492 -27.29407 -26.78892 -24.44920 -22.87069 -22.32322 -21.29714 -19.78532 -19.02838 -18.82817 -17.58543 -17.23167 -17.00091 -16.58872 -16.34871 -16.02770 -15.66190 -15.14148 -14.96507 -14.59758 -14.55395 -14.31344 -13.54143 -13.51188 -13.45793 -12.97543 -12.90208 -12.82764 -12.61395 -12.44735 -12.20203 -11.95914 -11.65198 -11.52034 -11.13523 -11.06316 -10.00527 -9.64119 -9.37626 -9.25640 -8.60757 -6.40332 0.25043 0.52668 0.98732 1.39728 1.47424 1.53892 1.74159 2.04402 2.21983 2.22913 2.78583 3.16546 3.64928 3.84545 4.15364 4.32640 4.38257 4.47328 4.53059 4.74343 4.80818 4.85325 4.94147 5.06117 5.11882 5.21803 5.30856 5.43149 5.48170 5.59303 5.80219 5.87122 6.02600 6.14367 6.28047 6.56486 6.64765 6.88132 6.91643 6.92409 7.39630 8.36059 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.003855 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.815127 B = 7261.270820 C = 8147.662324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.626 5.626 3 C 0.070 3.930 4 C 0.702 3.298 5 O -0.623 6.623 6 N -0.537 5.537 7 N -0.503 5.503 8 C 0.569 3.431 9 O -0.576 6.576 10 C -0.131 4.131 11 C -0.195 4.195 12 C -0.096 4.096 13 C -0.204 4.204 14 C 0.068 3.932 15 C -0.496 4.496 16 H 0.085 0.915 17 C 0.027 3.973 18 N -0.834 5.834 19 Si 0.986 3.014 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.112 4.112 24 H 0.063 0.937 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.431 0.569 31 H 0.436 0.564 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.286 0.714 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 7.467 -1.614 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.364 5.364 3 C -0.072 4.072 4 C 0.403 3.597 5 O -0.504 6.504 6 N -0.291 5.291 7 N -0.253 5.253 8 C 0.359 3.641 9 O -0.456 6.456 10 C -0.136 4.136 11 C -0.215 4.215 12 C -0.114 4.114 13 C -0.224 4.224 14 C 0.066 3.934 15 C -0.526 4.526 16 H 0.103 0.897 17 C -0.186 4.186 18 N -0.460 5.460 19 Si 0.807 3.193 20 H -0.191 1.191 21 H -0.195 1.195 22 H -0.176 1.176 23 C -0.133 4.133 24 H 0.082 0.918 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.081 0.919 30 H 0.276 0.724 31 H 0.281 0.719 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.131 0.869 35 H 0.096 0.904 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.384 7.699 -1.456 15.509 hybrid contribution 0.952 0.246 0.202 1.003 sum -12.433 7.945 -1.254 14.808 Atomic orbital electron populations 1.21781 0.75459 1.04212 1.02793 1.46942 1.08121 1.04050 1.77275 1.22083 0.96953 0.84528 1.03683 1.15772 0.79881 0.85398 0.78640 1.90899 1.67919 1.31598 1.59955 1.43796 1.03701 1.02696 1.78870 1.44615 1.03417 1.01375 1.75914 1.18826 0.79786 0.90055 0.75385 1.90684 1.68877 1.33584 1.52417 1.19388 0.93770 0.91336 1.09078 1.20875 0.98669 0.91427 1.10502 1.20920 0.93729 0.97726 0.99004 1.21515 0.94498 0.96843 1.09562 1.17938 0.94327 0.91126 0.89993 1.19857 0.91621 1.11544 1.29587 0.89730 1.26818 1.06018 0.93400 0.92389 1.69856 1.40321 1.15698 1.20124 0.85124 0.75772 0.79804 0.78605 1.19117 1.19538 1.17610 1.21423 0.91447 0.98851 1.01537 0.91816 0.87460 0.91999 0.90846 0.87174 0.91871 0.72376 0.71943 0.85347 0.84233 0.86866 0.90374 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.43 10.49 127.77 1.34 2.77 16 2 N -0.63 -12.35 3.27 -890.20 -2.91 -15.27 16 3 C 0.07 0.86 10.41 127.77 1.33 2.19 16 4 C 0.70 20.52 8.39 179.06 1.50 22.02 16 5 O -0.62 -22.19 15.75 -4.01 -0.06 -22.25 16 6 N -0.54 -16.66 6.13 -184.75 -1.13 -17.80 16 7 N -0.50 -18.16 6.21 -175.57 -1.09 -19.25 16 8 C 0.57 24.97 7.89 86.80 0.68 25.66 16 9 O -0.58 -28.30 16.18 -3.88 -0.06 -28.37 16 10 C -0.13 -6.15 5.87 -20.14 -0.12 -6.27 16 11 C -0.19 -7.83 9.55 22.70 0.22 -7.61 16 12 C -0.10 -3.80 10.01 22.17 0.22 -3.57 16 13 C -0.20 -9.36 9.78 22.77 0.22 -9.14 16 14 C 0.07 3.64 5.53 -21.32 -0.12 3.52 16 15 C -0.50 -26.45 9.06 23.47 0.21 -26.23 16 16 H 0.08 4.25 7.87 -2.91 -0.02 4.23 16 17 C 0.03 1.41 5.25 85.25 0.45 1.85 16 18 N -0.83 -45.52 10.92 21.83 0.24 -45.29 16 19 Si 0.99 38.96 29.57 68.60 2.03 40.99 16 20 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 21 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 23 C -0.11 -6.06 8.18 23.01 0.19 -5.87 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 0.78 8.07 -2.39 -0.02 0.76 16 26 H 0.06 1.15 7.36 -2.39 -0.02 1.13 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 0.70 8.09 -2.39 -0.02 0.68 16 29 H 0.06 0.89 6.01 -2.38 -0.01 0.87 16 30 H 0.43 12.27 5.61 -213.33 -1.20 11.07 16 31 H 0.44 14.76 6.03 -213.32 -1.29 13.48 16 32 H 0.13 4.22 6.38 -2.91 -0.02 4.20 16 33 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 34 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 35 H 0.29 14.37 8.30 -92.71 -0.77 13.60 16 36 H 0.10 6.26 5.90 -2.91 -0.02 6.24 16 Total: -1.00 -70.80 311.76 1.79 -69.02 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: -1.35 Total: 38.89 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 6.13 Total: -0.68 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -4.90 Total: -97.60 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -0.13 Total: -50.62 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -70.80 1.79 -69.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299411000.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.153 kcal (2) G-P(sol) polarization free energy of solvation -70.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds