Wall clock time and date at job start Mon Mar 30 2020 02:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36942 * 119.99893 * 2 1 4 4 H 1.07996 * 119.99713 * 204.95649 * 3 2 1 5 5 C 1.38817 * 119.99850 * 24.96040 * 3 2 1 6 6 N 1.31624 * 120.00035 * 5.23645 * 5 3 2 7 7 Si 1.86797 * 119.99878 * 185.23591 * 5 3 2 8 8 H 1.48502 * 109.46901 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47222 * 119.99778 * 7 5 3 10 10 H 1.48502 * 109.47116 * 239.99936 * 7 5 3 11 11 C 1.46493 * 120.00115 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47188 * 90.00039 * 11 2 1 13 13 O 1.21275 * 119.99956 * 359.97438 * 12 11 2 14 14 N 1.34773 * 120.00054 * 180.02562 * 12 11 2 15 15 C 1.39296 * 119.99734 * 185.63401 * 14 12 11 16 16 C 1.38844 * 120.16696 * 25.22703 * 15 14 12 17 17 C 1.38027 * 120.07318 * 180.02562 * 16 15 14 18 18 C 1.38566 * 120.39950 * 359.97086 * 17 16 15 19 19 C 1.37793 * 120.33089 * 0.02562 * 18 17 16 20 20 C 1.39685 * 119.92619 * 0.02562 * 19 18 17 21 21 C 1.47515 * 120.20074 * 179.97438 * 20 19 18 22 22 N 1.34779 * 120.00281 * 5.32145 * 21 20 19 23 23 O 1.21591 * 120.00048 * 185.31380 * 21 20 19 24 24 H 1.09003 * 109.47016 * 275.00850 * 1 2 3 25 25 H 1.09003 * 109.47147 * 35.00100 * 1 2 3 26 26 H 1.08994 * 109.46971 * 155.00884 * 1 2 3 27 27 H 0.97000 * 119.99659 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.47508 * 330.00311 * 11 2 1 29 29 H 1.08997 * 109.47244 * 209.99698 * 11 2 1 30 30 H 0.97000 * 120.00493 * 5.63214 * 14 12 11 31 31 H 1.08000 * 119.96591 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.80032 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.82942 * 180.02562 * 18 17 16 34 34 H 1.08009 * 120.03789 * 179.74402 * 19 18 17 35 35 H 0.97001 * 119.99681 * 359.97438 * 22 21 20 36 36 H 0.96996 * 120.00355 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1540 1.2296 -0.3946 5 6 1.5528 2.3320 0.5073 6 7 0.3707 2.2592 1.0817 7 14 2.4272 3.9773 0.3749 8 1 3.7328 3.7905 -0.3078 9 1 1.5896 4.9215 -0.4075 10 1 2.6548 4.5278 1.7352 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7031 -1.4216 13 8 2.0543 -1.0204 -2.3431 14 7 3.1108 -2.8507 -1.6684 15 6 3.4461 -3.1939 -2.9761 16 6 3.5945 -2.2062 -3.9405 17 6 3.9263 -2.5485 -5.2358 18 6 4.1140 -3.8765 -5.5839 19 6 3.9710 -4.8702 -4.6401 20 6 3.6345 -4.5393 -3.3254 21 6 3.4792 -5.5983 -2.3102 22 7 3.7661 -6.8778 -2.6218 23 8 3.0926 -5.3168 -1.1923 24 1 -0.3633 0.0897 1.0238 25 1 -0.3633 0.8418 -0.5895 26 1 -0.3633 -0.9314 -0.4341 27 1 -0.0465 3.0601 1.4358 28 1 1.6085 -2.0286 0.5129 29 1 3.1499 -1.1385 0.5133 30 1 3.3539 -3.4377 -0.9354 31 1 3.4495 -1.1689 -3.6770 32 1 4.0402 -1.7766 -5.9825 33 1 4.3738 -4.1339 -6.6001 34 1 4.1144 -5.9041 -4.9176 35 1 4.0743 -7.1024 -3.5137 36 1 3.6636 -7.5742 -1.9544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299674485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:34 Heat of formation + Delta-G solvation = -34.633336 kcal Electronic energy + Delta-G solvation = -21212.541600 eV Core-core repulsion = 17889.881101 eV Total energy + Delta-G solvation = -3322.660499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.89100 -40.37011 -38.95207 -37.17691 -35.83623 -34.68708 -33.38711 -31.86022 -31.02659 -28.71411 -27.91137 -25.08837 -24.46434 -23.08861 -21.88374 -21.16132 -19.21963 -18.87661 -18.18925 -17.98466 -17.74994 -16.89209 -16.52580 -16.06819 -15.81270 -15.69673 -15.44629 -15.10800 -14.88511 -14.79313 -14.28912 -13.78377 -13.69596 -13.15677 -13.03340 -12.82948 -12.64608 -12.52893 -12.34114 -12.09367 -11.91026 -11.58174 -11.12709 -10.85516 -10.74135 -10.57372 -9.97206 -9.05218 -8.85669 -7.87459 -5.39863 -0.19169 0.35507 1.43571 1.45387 1.56238 1.72995 1.83203 2.15093 2.49646 2.52761 2.91019 3.28381 3.61550 3.81133 3.87069 3.96986 4.17567 4.43345 4.45400 4.50579 4.60076 4.61426 4.75966 4.92456 5.16697 5.28882 5.31531 5.52727 5.55633 5.56921 5.64705 5.86113 6.00595 6.24385 6.38664 6.56173 7.07914 7.21129 7.32969 7.74891 8.19613 9.16608 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026387 B = 0.004424 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.886198 B = 6326.906916 C = 7011.467887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.595 5.595 3 C -0.263 4.263 4 H 0.062 0.938 5 C -0.048 4.048 6 N -0.937 5.937 7 Si 0.976 3.024 8 H -0.270 1.270 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.133 3.867 12 C 0.478 3.522 13 O -0.544 6.544 14 N -0.661 5.661 15 C 0.191 3.809 16 C -0.178 4.178 17 C -0.069 4.069 18 C -0.148 4.148 19 C -0.049 4.049 20 C -0.202 4.202 21 C 0.566 3.434 22 N -0.822 5.822 23 O -0.586 6.586 24 H 0.020 0.980 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.251 0.749 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.425 0.575 31 H 0.115 0.885 32 H 0.145 0.855 33 H 0.169 0.831 34 H 0.176 0.824 35 H 0.419 0.581 36 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.584 -20.911 -12.849 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.316 5.316 3 C -0.393 4.393 4 H 0.080 0.920 5 C -0.243 4.243 6 N -0.583 5.583 7 Si 0.803 3.197 8 H -0.195 1.195 9 H -0.218 1.218 10 H -0.208 1.208 11 C 0.002 3.998 12 C 0.265 3.735 13 O -0.420 6.420 14 N -0.312 5.312 15 C 0.092 3.908 16 C -0.199 4.199 17 C -0.087 4.087 18 C -0.166 4.166 19 C -0.068 4.068 20 C -0.208 4.208 21 C 0.354 3.646 22 N -0.387 5.387 23 O -0.468 6.468 24 H 0.038 0.962 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.269 0.731 31 H 0.133 0.867 32 H 0.163 0.837 33 H 0.187 0.813 34 H 0.193 0.807 35 H 0.251 0.749 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 9.918 -19.924 -12.641 25.596 hybrid contribution 0.146 0.724 0.322 0.805 sum 10.065 -19.201 -12.319 24.934 Atomic orbital electron populations 1.20556 0.82412 0.95259 0.97862 1.43758 1.02178 1.00891 1.84762 1.19428 0.99028 0.87445 1.33397 0.92006 1.25866 0.98055 1.02046 0.98318 1.70228 1.17080 1.28209 1.42799 0.85084 0.77985 0.79325 0.77281 1.19484 1.21759 1.20825 1.20887 0.99400 0.89341 0.90156 1.23473 0.75661 0.79304 0.95083 1.90574 1.49958 1.54327 1.47177 1.44262 1.55390 1.23399 1.08127 1.18262 0.94002 0.92920 0.85602 1.21418 1.04272 0.99441 0.94787 1.21571 0.94055 0.98566 0.94546 1.21451 1.02271 0.91394 1.01506 1.21552 0.94028 1.01761 0.89457 1.19737 1.13984 0.90542 0.96568 1.18209 0.75911 0.84118 0.86385 1.43429 1.69043 1.07082 1.19108 1.90625 1.49116 1.82720 1.24291 0.96169 0.96703 0.96762 0.93992 0.88648 0.88451 0.73076 0.86728 0.83713 0.81344 0.80704 0.74852 0.75286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.12 8.95 127.77 1.14 11.26 16 2 N -0.60 -32.67 2.41 -731.31 -1.76 -34.43 16 3 C -0.26 -15.53 9.66 84.03 0.81 -14.72 16 4 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 5 C -0.05 -2.82 5.24 84.86 0.45 -2.38 16 6 N -0.94 -57.50 10.44 21.65 0.23 -57.28 16 7 Si 0.98 47.32 29.56 68.60 2.03 49.35 16 8 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 9 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 11 C 0.13 5.86 6.13 85.64 0.52 6.39 16 12 C 0.48 20.82 7.69 87.66 0.67 21.49 16 13 O -0.54 -27.86 13.61 -3.02 -0.04 -27.90 16 14 N -0.66 -23.78 4.85 -302.95 -1.47 -25.25 16 15 C 0.19 6.21 6.43 38.60 0.25 6.46 16 16 C -0.18 -5.87 8.70 22.36 0.19 -5.68 16 17 C -0.07 -1.56 10.03 22.30 0.22 -1.34 16 18 C -0.15 -2.24 10.02 22.24 0.22 -2.02 16 19 C -0.05 -0.72 9.52 22.51 0.21 -0.50 16 20 C -0.20 -4.77 5.89 -19.99 -0.12 -4.89 16 21 C 0.57 12.63 8.02 86.69 0.70 13.33 16 22 N -0.82 -8.64 8.82 -175.83 -1.55 -10.19 16 23 O -0.59 -17.83 14.65 -4.00 -0.06 -17.89 16 24 H 0.02 1.15 7.35 -2.39 -0.02 1.13 16 25 H 0.01 0.86 7.25 -2.39 -0.02 0.85 16 26 H 0.01 0.69 8.03 -2.39 -0.02 0.67 16 27 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 28 H 0.10 3.72 8.07 -2.39 -0.02 3.70 16 29 H 0.10 3.95 8.04 -2.39 -0.02 3.93 16 30 H 0.42 14.13 6.02 -92.71 -0.56 13.57 16 31 H 0.11 4.68 5.82 -2.91 -0.02 4.67 16 32 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.18 0.69 6.44 -2.91 -0.02 0.67 16 35 H 0.42 1.25 6.89 -92.71 -0.64 0.61 16 36 H 0.41 3.34 8.93 -92.71 -0.83 2.51 16 Total: -1.00 -82.07 307.05 1.78 -80.29 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -0.87 Total: 15.90 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: 5.28 Total: 27.40 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -4.56 Total: -127.14 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.10 Total: -45.79 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -82.07 1.78 -80.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299674485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.656 kcal (2) G-P(sol) polarization free energy of solvation -82.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds