Wall clock time and date at job start Mon Mar 30 2020 01:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34950 * 126.03464 * 2 1 4 4 C 1.35311 * 107.74576 * 180.14678 * 3 2 1 5 5 C 1.50692 * 126.04465 * 179.87438 * 4 3 2 6 6 C 1.53007 * 109.46994 * 269.71343 * 5 4 3 7 7 H 1.08994 * 110.54082 * 303.60105 * 6 5 4 8 8 C 1.54231 * 110.60343 * 180.58584 * 6 5 4 9 9 C 1.51315 * 103.55230 * 241.25730 * 8 6 5 10 10 O 1.21230 * 125.39674 * 180.25533 * 9 8 6 11 11 N 1.33881 * 109.20698 * 0.39063 * 9 8 6 12 12 C 1.46506 * 122.76310 * 179.84468 * 11 9 8 13 13 C 1.50697 * 109.46529 * 269.70839 * 12 11 9 14 14 H 1.08002 * 120.00599 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99675 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00210 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00019 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 C 1.33877 * 114.47325 * 359.57134 * 11 9 8 22 22 O 1.21228 * 125.39497 * 180.24687 * 21 11 9 23 23 C 1.39874 * 107.91622 * 359.60666 * 4 3 2 24 24 N 1.30831 * 108.20901 * 0.24001 * 23 4 3 25 25 H 1.08996 * 109.47062 * 270.26536 * 1 2 3 26 26 H 1.08996 * 109.47304 * 30.26420 * 1 2 3 27 27 H 1.09004 * 109.46773 * 150.26476 * 1 2 3 28 28 H 1.07997 * 126.12514 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.47536 * 149.71084 * 5 4 3 30 30 H 1.09003 * 109.47015 * 29.70851 * 5 4 3 31 31 H 1.08996 * 110.60916 * 359.97438 * 8 6 5 32 32 H 1.09002 * 110.60153 * 122.81016 * 8 6 5 33 33 H 1.08995 * 109.46912 * 149.70942 * 12 11 9 34 34 H 1.09007 * 109.46641 * 29.70574 * 12 11 9 35 35 H 0.96998 * 119.99640 * 180.02562 * 16 15 13 36 36 H 1.08002 * 125.89597 * 180.22715 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6667 -0.0033 5 6 4.7680 1.5453 -0.0072 6 6 5.1825 1.8360 -1.4511 7 1 5.3492 0.9066 -1.9956 8 6 6.4438 2.7229 -1.4855 9 6 5.9792 3.9725 -2.2012 10 8 6.6692 4.9384 -2.4473 11 7 4.6846 3.8435 -2.5171 12 6 3.9315 4.8872 -3.2171 13 6 3.3057 5.8165 -2.2092 14 1 3.4544 5.6470 -1.1530 15 6 2.5441 6.8838 -2.6356 16 7 1.9975 7.6946 -1.7561 17 14 2.2875 7.1776 -4.4624 18 1 3.3648 8.0601 -4.9780 19 1 2.3241 5.8793 -5.1825 20 1 0.9696 7.8268 -4.6791 21 6 4.1364 2.6800 -2.1458 22 8 2.9842 2.3543 -2.3357 23 6 3.5347 -0.7320 0.0037 24 7 2.2892 -1.1328 0.0058 25 1 -0.3633 0.0048 1.0276 26 1 -0.3634 0.8876 -0.5179 27 1 -0.3633 -0.8924 -0.5097 28 1 1.9281 2.1193 -0.0004 29 1 5.5820 1.0366 0.5092 30 1 4.5441 2.4826 0.5022 31 1 6.7757 2.9574 -0.4741 32 1 7.2408 2.2347 -2.0464 33 1 3.1499 4.4275 -3.8219 34 1 4.6056 5.4512 -3.8619 35 1 1.4614 8.4453 -2.0561 36 1 4.4054 -1.3709 0.0067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332705687.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:03 Heat of formation + Delta-G solvation = -10.853112 kcal Electronic energy + Delta-G solvation = -21619.113528 eV Core-core repulsion = 18297.484217 eV Total energy + Delta-G solvation = -3321.629311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.76970 -41.89298 -39.39423 -36.79849 -36.20838 -34.79621 -33.82780 -31.98151 -30.05499 -28.66011 -26.95348 -25.47497 -24.48006 -22.56999 -21.95641 -21.20099 -20.11414 -19.34888 -18.03839 -17.68933 -17.44646 -17.05866 -16.36013 -16.22295 -15.56391 -15.24117 -15.19461 -14.97596 -14.69919 -14.52008 -14.18769 -13.97039 -13.88383 -13.60940 -13.39233 -13.19231 -12.77677 -12.71399 -12.63167 -12.27493 -12.04337 -11.87987 -11.43484 -11.22522 -10.92927 -10.75721 -10.45227 -10.23692 -9.18241 -8.43742 -6.51099 0.70292 1.06369 1.27571 1.29309 1.38868 1.75263 1.83213 1.94602 2.10483 2.22819 2.89338 3.32293 3.43368 3.62285 3.81542 4.07499 4.12407 4.38915 4.39921 4.48104 4.52036 4.55166 4.63289 4.65066 4.73702 4.77111 4.88869 4.94496 5.02044 5.22160 5.27005 5.41884 5.90228 6.03295 6.15878 6.19427 6.47908 6.61948 6.85060 6.98137 7.14946 8.72530 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.006105 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.215476 B = 4585.441327 C = 5733.137133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.388 5.388 3 C 0.071 3.929 4 C -0.249 4.249 5 C -0.017 4.017 6 C -0.102 4.102 7 H 0.153 0.847 8 C -0.131 4.131 9 C 0.510 3.490 10 O -0.534 6.534 11 N -0.571 5.571 12 C 0.209 3.791 13 C -0.543 4.543 14 H 0.034 0.966 15 C 0.019 3.981 16 N -0.935 5.935 17 Si 0.943 3.057 18 H -0.261 1.261 19 H -0.250 1.250 20 H -0.272 1.272 21 C 0.515 3.485 22 O -0.513 6.513 23 C 0.061 3.939 24 N -0.337 5.337 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.150 0.850 29 H 0.137 0.863 30 H 0.057 0.943 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.272 0.728 36 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.849 -18.057 2.945 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.170 5.170 3 C -0.076 4.076 4 C -0.260 4.260 5 C -0.055 4.055 6 C -0.123 4.123 7 H 0.170 0.830 8 C -0.169 4.169 9 C 0.302 3.698 10 O -0.410 6.410 11 N -0.312 5.312 12 C 0.087 3.913 13 C -0.581 4.581 14 H 0.052 0.948 15 C -0.180 4.180 16 N -0.574 5.574 17 Si 0.765 3.235 18 H -0.186 1.186 19 H -0.174 1.174 20 H -0.196 1.196 21 C 0.306 3.694 22 O -0.387 6.387 23 C -0.125 4.125 24 N -0.158 5.158 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.167 0.833 29 H 0.155 0.845 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.178 0.822 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.471 -18.554 2.724 19.279 hybrid contribution -0.524 1.957 -0.761 2.164 sum 3.947 -16.597 1.963 17.173 Atomic orbital electron populations 1.22033 0.73199 1.04999 1.04250 1.48638 1.07530 1.03526 1.57279 1.22407 0.92354 0.92866 1.00006 1.20094 0.94155 0.94513 1.17287 1.19870 0.95370 0.98252 0.92045 1.22239 0.91007 0.99774 0.99266 0.82970 1.22713 0.99086 0.90078 1.05067 1.21896 0.80501 0.90105 0.77289 1.90691 1.59467 1.36465 1.54397 1.47001 1.13468 1.18383 1.52327 1.19536 0.92044 0.86630 0.93056 1.21278 1.32261 1.11407 0.93165 0.94774 1.25765 0.94238 0.94800 1.03221 1.70013 1.34288 1.16725 1.36413 0.85782 0.78688 0.79810 0.79216 1.18612 1.17415 1.19648 1.21709 0.89209 0.81441 0.77042 1.90661 1.19275 1.74799 1.53953 1.24299 0.95579 0.94286 0.98334 1.77196 1.02844 1.09233 1.26540 0.89384 0.89398 0.88596 0.83291 0.84462 0.92444 0.83574 0.82240 0.94068 0.94273 0.91910 0.76312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.01 11.47 127.77 1.47 3.47 16 2 N -0.39 -10.99 4.01 -369.55 -1.48 -12.48 16 3 C 0.07 2.14 9.46 83.54 0.79 2.93 16 4 C -0.25 -6.12 4.83 -20.15 -0.10 -6.22 16 5 C -0.02 -0.32 5.04 29.85 0.15 -0.17 16 6 C -0.10 -2.10 3.13 -10.93 -0.03 -2.14 16 7 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 8 C -0.13 -2.42 6.67 30.46 0.20 -2.21 16 9 C 0.51 18.16 8.08 87.99 0.71 18.87 16 10 O -0.53 -23.46 17.47 -2.87 -0.05 -23.51 16 11 N -0.57 -23.47 2.54 -760.71 -1.93 -25.40 16 12 C 0.21 10.47 4.38 85.63 0.37 10.85 16 13 C -0.54 -32.25 9.94 25.60 0.25 -31.99 16 14 H 0.03 2.24 8.06 -2.91 -0.02 2.21 16 15 C 0.02 1.14 5.47 84.65 0.46 1.60 16 16 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 17 Si 0.94 44.59 27.47 68.60 1.88 46.47 16 18 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 19 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 C 0.52 18.37 7.27 87.99 0.64 19.01 16 22 O -0.51 -21.80 14.90 -2.87 -0.04 -21.84 16 23 C 0.06 1.33 11.96 85.24 1.02 2.35 16 24 N -0.34 -9.36 12.58 -57.02 -0.72 -10.08 16 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.15 5.06 7.90 -2.91 -0.02 5.04 16 29 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.15 1.99 7.74 -2.39 -0.02 1.97 16 32 H 0.16 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.04 2.09 6.89 -2.39 -0.02 2.07 16 34 H 0.04 1.97 7.25 -2.38 -0.02 1.95 16 35 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.22 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -84.80 312.56 4.94 -79.87 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.04 Total: 8.94 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 5.94 Total: 16.36 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -3.83 Total: -106.29 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.09 Total: -45.36 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -84.80 4.94 -79.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332705687.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.014 kcal (2) G-P(sol) polarization free energy of solvation -84.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds