Wall clock time and date at job start Mon Mar 30 2020 01:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20767 * 119.99724 * 2 1 4 4 C 1.50701 * 120.00256 * 179.72373 * 2 1 3 5 5 C 1.50693 * 115.54778 * 29.45556 * 4 2 1 6 6 O 1.21291 * 119.99988 * 245.09376 * 5 4 2 7 7 N 1.34772 * 120.00113 * 65.09636 * 5 4 2 8 8 C 1.40162 * 120.00255 * 174.78827 * 7 5 4 9 9 C 1.40401 * 125.97361 * 0.02562 * 8 7 5 10 10 C 1.35238 * 107.87212 * 179.97438 * 9 8 7 11 11 N 1.34962 * 107.85662 * 359.97438 * 10 9 8 12 12 C 1.46510 * 125.97610 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47180 * 124.99758 * 12 11 10 14 14 H 1.08009 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99952 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00187 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99908 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47217 * 60.00112 * 17 15 13 19 19 H 1.48500 * 109.46772 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47147 * 300.00137 * 17 15 13 21 21 N 1.31217 * 125.97342 * 179.69077 * 8 7 5 22 22 C 1.53001 * 117.49660 * 243.75376 * 4 2 1 23 23 C 1.52998 * 59.99972 * 252.51103 * 22 4 2 24 24 H 1.08999 * 109.47290 * 245.25442 * 1 2 3 25 25 H 1.09003 * 109.47522 * 5.25435 * 1 2 3 26 26 H 1.08998 * 109.47237 * 125.25343 * 1 2 3 27 27 H 0.96999 * 120.00092 * 354.79465 * 7 5 4 28 28 H 1.08007 * 126.06715 * 359.97438 * 9 8 7 29 29 H 1.08001 * 126.07279 * 180.02562 * 10 9 8 30 30 H 1.08999 * 109.46773 * 245.00077 * 12 11 10 31 31 H 1.08997 * 109.46708 * 5.00317 * 12 11 10 32 32 H 0.96998 * 120.00197 * 179.97438 * 16 15 13 33 33 H 1.09005 * 117.49899 * 359.97438 * 22 4 2 34 34 H 1.08991 * 117.50255 * 145.01999 * 22 4 2 35 35 H 1.09002 * 117.49427 * 252.51555 * 23 22 4 36 36 H 1.08996 * 117.50409 * 107.49117 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3051 0.0063 5 6 1.5603 -2.4630 -0.6567 6 8 1.2162 -3.4214 0.0022 7 7 1.3164 -2.4338 -1.9819 8 6 0.7647 -3.5544 -2.6178 9 6 0.4187 -4.7665 -1.9996 10 6 -0.0799 -5.5896 -2.9498 11 7 -0.0532 -4.9280 -4.1258 12 6 -0.5035 -5.4513 -5.4181 13 6 -1.5256 -4.5156 -6.0104 14 1 -1.8109 -3.6203 -5.4777 15 6 -2.0957 -4.8017 -7.2327 16 7 -1.7479 -5.8915 -7.8815 17 14 -3.3621 -3.6414 -7.9672 18 1 -2.7523 -2.3013 -8.1607 19 1 -3.8186 -4.1719 -9.2769 20 1 -4.5226 -3.5289 -7.0475 21 7 0.4755 -3.6518 -3.8940 22 6 3.1335 -1.6108 1.2250 23 6 3.7848 -1.2412 -0.1091 24 1 -0.3634 -0.4302 0.9333 25 1 -0.3634 1.0233 -0.0941 26 1 -0.3633 -0.5931 -0.8392 27 1 1.5228 -1.6373 -2.4955 28 1 0.5309 -5.0003 -0.9511 29 1 -0.4370 -6.5970 -2.7949 30 1 0.3481 -5.5337 -6.0933 31 1 -0.9510 -6.4349 -5.2757 32 1 -2.1493 -6.0930 -8.7413 33 1 3.1631 -0.8678 2.0221 34 1 3.2015 -2.6497 1.5476 35 1 4.2812 -2.0371 -0.6644 36 1 4.2426 -0.2553 -0.1898 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340483255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:19 Heat of formation + Delta-G solvation = 38.118245 kcal Electronic energy + Delta-G solvation = -20763.060061 eV Core-core repulsion = 17443.554307 eV Total energy + Delta-G solvation = -3319.505754 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.13025 -40.30802 -38.96373 -36.24736 -34.86357 -33.39409 -31.16107 -30.60644 -29.40099 -26.96732 -25.38965 -23.22851 -22.84743 -22.22717 -20.79353 -19.96235 -18.91407 -17.49687 -16.76654 -16.63645 -16.17287 -15.64376 -15.22461 -15.05689 -14.85088 -14.53238 -14.23431 -13.78847 -13.72266 -12.89104 -12.56526 -12.48589 -12.39953 -12.30080 -11.98142 -11.86213 -11.44064 -11.10041 -10.99116 -10.88213 -10.54199 -10.29208 -10.18669 -10.00493 -9.68196 -9.55613 -8.66359 -8.22509 -7.56635 -6.27733 -4.33190 1.44323 2.07103 2.54400 2.81735 3.23401 3.27000 3.28382 3.31374 3.50932 3.65606 3.75633 4.28293 4.34833 4.38291 4.48481 4.71915 5.06269 5.07638 5.16872 5.24456 5.31167 5.46469 5.48966 5.71579 5.72216 5.73834 6.15465 6.39152 6.49378 6.79519 7.00109 7.05299 7.28472 7.45817 7.66368 7.83728 7.97339 8.06896 8.54946 8.75335 9.32732 10.81055 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025191 B = 0.003871 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.246635 B = 7231.801371 C = 7914.746525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.401 3.599 3 O -0.448 6.448 4 C -0.228 4.228 5 C 0.563 3.437 6 O -0.504 6.504 7 N -0.625 5.625 8 C 0.254 3.746 9 C -0.288 4.288 10 C 0.053 3.947 11 N -0.316 5.316 12 C 0.258 3.742 13 C -0.531 4.531 14 H 0.068 0.932 15 C 0.063 3.937 16 N -0.895 5.895 17 Si 0.908 3.092 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.275 1.275 21 N -0.301 5.301 22 C -0.112 4.112 23 C -0.134 4.134 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.411 0.589 28 H 0.159 0.841 29 H 0.169 0.831 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.268 0.732 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.443 7.057 15.753 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.276 3.724 3 O -0.321 6.321 4 C -0.232 4.232 5 C 0.347 3.653 6 O -0.377 6.377 7 N -0.272 5.272 8 C 0.001 3.999 9 C -0.319 4.319 10 C -0.097 4.097 11 N -0.098 5.098 12 C 0.141 3.859 13 C -0.569 4.569 14 H 0.087 0.913 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.735 3.265 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.200 1.200 21 N -0.132 5.132 22 C -0.150 4.150 23 C -0.171 4.171 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.247 0.753 28 H 0.177 0.823 29 H 0.186 0.814 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.455 7.350 14.804 18.131 hybrid contribution -0.793 0.373 -0.165 0.891 sum 6.662 7.722 14.639 17.841 Atomic orbital electron populations 1.22329 0.92871 1.05531 1.05456 1.23455 0.91868 0.87109 0.70006 1.90425 1.72048 1.33680 1.35915 1.22082 0.95841 0.96381 1.08944 1.18948 0.78712 0.86693 0.80911 1.90665 1.49694 1.34087 1.63204 1.42385 1.61509 1.15257 1.08033 1.19071 1.00760 0.88481 0.91569 1.21486 1.15576 0.93349 1.01471 1.22575 1.01681 0.99423 0.86031 1.49125 1.44074 1.07516 1.09111 1.19771 0.95923 0.94931 0.75318 1.21206 1.22692 1.08408 1.04590 0.91343 1.24937 0.97046 0.95629 0.96362 1.69903 1.43203 1.24834 1.15383 0.86384 0.81111 0.80836 0.78164 1.19909 1.21004 1.20023 1.77357 1.21535 1.01292 1.12981 1.23045 0.96917 1.04509 0.90486 1.23165 0.88920 1.05001 1.00032 0.88122 0.89155 0.88638 0.75327 0.82328 0.81375 0.93650 0.92458 0.92217 0.87256 0.86397 0.87109 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.85 9.73 36.00 0.35 -1.50 16 2 C 0.40 4.18 6.91 -29.04 -0.20 3.98 16 3 O -0.45 -5.60 17.00 5.99 0.10 -5.50 16 4 C -0.23 -2.34 2.39 -156.82 -0.38 -2.72 16 5 C 0.56 7.55 6.06 -10.99 -0.07 7.49 16 6 O -0.50 -8.06 13.85 5.55 0.08 -7.98 16 7 N -0.62 -9.21 5.42 -11.14 -0.06 -9.27 16 8 C 0.25 4.86 8.10 -154.39 -1.25 3.60 16 9 C -0.29 -5.41 9.61 -39.84 -0.38 -5.79 16 10 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 11 N -0.32 -7.13 3.67 -62.56 -0.23 -7.36 16 12 C 0.26 6.41 6.26 -5.19 -0.03 6.38 16 13 C -0.53 -14.51 9.23 -34.44 -0.32 -14.82 16 14 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -25.01 13.29 55.43 0.74 -24.27 16 17 Si 0.91 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 N -0.30 -6.69 12.42 31.44 0.39 -6.30 16 22 C -0.11 -0.93 9.76 -26.73 -0.26 -1.19 16 23 C -0.13 -1.14 9.75 -26.73 -0.26 -1.40 16 24 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 26 H 0.10 0.94 7.66 -51.93 -0.40 0.55 16 27 H 0.41 5.22 8.83 -40.82 -0.36 4.86 16 28 H 0.16 2.86 5.93 -52.48 -0.31 2.55 16 29 H 0.17 2.60 8.06 -52.49 -0.42 2.18 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.39 8.07 -51.93 -0.42 0.98 16 32 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.12 0.99 7.99 -51.93 -0.41 0.57 16 35 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.12 0.95 7.68 -51.93 -0.40 0.55 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -31.84 322.21 -6.63 -38.47 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.38 Total: 4.85 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.09 Total: -3.54 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.84 Total: -47.20 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.18 Total: -13.49 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.84 -6.63 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340483255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.583 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds