Wall clock time and date at job start Mon Mar 30 2020 02:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 120.00092 * 2 1 4 4 O 1.21496 * 120.00021 * 0.02562 * 3 2 1 5 5 C 1.48340 * 120.00192 * 180.02562 * 3 2 1 6 6 C 1.39301 * 119.56876 * 179.97438 * 5 3 2 7 7 C 1.38452 * 119.18843 * 179.97438 * 6 5 3 8 8 C 1.39868 * 118.35513 * 0.02562 * 7 6 5 9 9 C 1.48012 * 120.46237 * 179.97438 * 8 7 6 10 10 O 1.21527 * 120.00177 * 141.75787 * 9 8 7 11 11 N 1.34777 * 119.99799 * 321.75951 * 9 8 7 12 12 C 1.46507 * 120.00128 * 4.80501 * 11 9 8 13 13 C 1.46502 * 120.00066 * 184.80457 * 11 9 8 14 14 C 1.50705 * 109.47044 * 89.99790 * 13 11 9 15 15 H 1.07998 * 120.00078 * 0.02562 * 14 13 11 16 16 C 1.37873 * 119.99726 * 180.02562 * 14 13 11 17 17 N 1.31512 * 119.99747 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00402 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47135 * 89.99689 * 18 16 14 20 20 H 1.48500 * 109.47506 * 210.00076 * 18 16 14 21 21 H 1.48502 * 109.46922 * 330.00381 * 18 16 14 22 22 C 1.39729 * 119.07758 * 359.97438 * 8 7 6 23 23 N 1.31408 * 120.71575 * 0.02562 * 22 8 7 24 24 H 1.08996 * 109.47822 * 59.99562 * 1 2 3 25 25 H 1.09000 * 109.47094 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46976 * 299.99139 * 1 2 3 27 27 H 0.96997 * 120.00107 * 180.02562 * 2 1 3 28 28 H 1.07996 * 120.41065 * 0.26109 * 6 5 3 29 29 H 1.08002 * 120.82312 * 180.02562 * 7 6 5 30 30 H 1.09000 * 109.46760 * 84.90075 * 12 11 9 31 31 H 1.09003 * 109.47078 * 204.90146 * 12 11 9 32 32 H 1.08996 * 109.46927 * 324.90073 * 12 11 9 33 33 H 1.09001 * 109.47393 * 209.99839 * 13 11 9 34 34 H 1.09004 * 109.46792 * 330.00052 * 13 11 9 35 35 H 0.97006 * 120.00179 * 179.97438 * 17 16 14 36 36 H 1.07995 * 119.64020 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5314 2.2194 0.0005 5 6 3.6222 1.1672 -0.0006 6 6 4.3096 2.3788 -0.0011 7 6 5.6941 2.3696 -0.0011 8 6 6.3502 1.1344 -0.0011 9 6 7.8290 1.0702 -0.0017 10 8 8.4004 0.2181 0.6497 11 7 8.5417 1.9567 -0.7246 12 6 7.8594 3.0477 -1.4250 13 6 9.9986 1.8294 -0.8100 14 6 10.3588 0.9610 -1.9879 15 1 9.5803 0.5459 -2.6109 16 6 11.6821 0.6966 -2.2703 17 7 11.9964 -0.0607 -3.2985 18 14 13.0287 1.4151 -1.1934 19 1 13.3341 0.4722 -0.0875 20 1 14.2504 1.6344 -2.0085 21 1 12.5720 2.7100 -0.6277 22 6 5.5903 -0.0382 -0.0006 23 7 4.2772 0.0130 -0.0006 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.9500 -0.8400 -0.0004 28 1 3.7693 3.3138 0.0031 29 1 6.2536 3.2934 -0.0011 30 1 7.7103 3.8822 -0.7398 31 1 8.4676 3.3743 -2.2686 32 1 6.8928 2.6982 -1.7877 33 1 10.4428 2.8166 -0.9371 34 1 10.3779 1.3754 0.1055 35 1 12.9275 -0.2465 -3.4974 36 1 6.0875 -0.9969 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343388737.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:32 Heat of formation + Delta-G solvation = -17.465825 kcal Electronic energy + Delta-G solvation = -20684.649193 eV Core-core repulsion = 17362.733133 eV Total energy + Delta-G solvation = -3321.916060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95160 -39.59754 -38.39754 -35.27694 -34.93727 -33.18554 -32.31690 -31.67200 -28.70444 -27.55651 -26.37341 -24.59713 -23.81740 -22.33321 -21.02849 -19.38598 -18.61574 -17.16801 -17.01104 -16.73612 -15.83840 -15.66502 -15.51936 -15.20814 -14.60779 -14.50493 -14.14536 -13.82049 -13.58936 -13.41344 -12.95160 -12.61070 -12.58284 -12.52613 -12.34105 -12.00713 -11.54392 -11.07052 -10.61665 -10.58859 -10.28129 -10.01101 -9.96064 -9.64577 -9.50465 -9.33174 -9.16971 -8.66617 -7.90905 -6.16310 -4.16713 0.26543 1.02720 2.39523 2.85866 3.16407 3.24205 3.30050 3.32050 3.52447 3.80790 3.94898 4.32749 4.54174 4.63172 4.68823 4.84284 4.91344 5.09260 5.18141 5.19300 5.43383 5.46048 5.56464 5.58666 5.75793 5.85357 6.01936 6.07672 6.32303 6.55847 6.81445 7.11105 7.12318 7.49823 7.52984 7.90360 7.98467 8.35664 8.66062 8.86335 9.42701 10.96771 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.040821 B = 0.003527 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.751611 B = 7937.088284 C = 8141.459548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.717 5.717 3 C 0.574 3.426 4 O -0.533 6.533 5 C 0.081 3.919 6 C -0.117 4.117 7 C -0.061 4.061 8 C -0.140 4.140 9 C 0.551 3.449 10 O -0.527 6.527 11 N -0.586 5.586 12 C 0.074 3.926 13 C 0.214 3.786 14 C -0.535 4.535 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.895 5.895 18 Si 0.877 3.123 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.265 1.265 22 C 0.151 3.849 23 N -0.463 5.463 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.415 0.585 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.041 0.959 35 H 0.266 0.734 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.502 4.145 6.004 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.368 5.368 3 C 0.359 3.641 4 O -0.409 6.409 5 C -0.057 4.057 6 C -0.138 4.138 7 C -0.087 4.087 8 C -0.145 4.145 9 C 0.337 3.663 10 O -0.404 6.404 11 N -0.316 5.316 12 C -0.070 4.070 13 C 0.094 3.906 14 C -0.573 4.573 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.190 1.190 22 C -0.010 4.010 23 N -0.175 5.175 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.250 0.750 28 H 0.170 0.830 29 H 0.174 0.826 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -18.995 3.614 6.231 20.314 hybrid contribution 1.518 0.639 0.275 1.670 sum -17.477 4.253 6.506 19.127 Atomic orbital electron populations 1.21603 0.79126 1.02563 1.02468 1.45637 1.07779 1.09210 1.74208 1.17951 0.85824 0.84007 0.76353 1.90778 1.68905 1.31318 1.49942 1.21171 0.94005 0.90074 1.00476 1.22031 0.94171 0.99389 0.98215 1.22241 0.94089 0.98569 0.93787 1.21475 0.96179 0.95249 1.01635 1.17947 0.85358 0.82231 0.80804 1.90780 1.71089 1.35841 1.42679 1.47779 1.09420 1.27053 1.47375 1.22052 0.98187 0.89290 0.97431 1.19781 0.74452 0.97585 0.98753 1.21297 0.93654 1.30925 1.11467 0.90657 1.24850 0.98468 0.94573 0.94991 1.69890 1.18507 1.37172 1.27684 0.86844 0.81752 0.80180 0.80881 1.19783 1.20979 1.19018 1.22910 0.87818 0.98503 0.91725 1.67564 1.10300 1.28054 1.11535 0.91973 0.90328 0.92006 0.74967 0.82998 0.82622 0.93036 0.89932 0.91751 0.94773 0.94095 0.92416 0.80808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.70 59.84 0.64 1.25 16 2 N -0.72 -6.84 5.70 -67.89 -0.39 -7.23 16 3 C 0.57 7.14 7.82 -12.10 -0.09 7.05 16 4 O -0.53 -7.84 16.31 5.37 0.09 -7.75 16 5 C 0.08 1.03 6.75 -82.93 -0.56 0.47 16 6 C -0.12 -1.37 9.62 -39.11 -0.38 -1.74 16 7 C -0.06 -0.74 7.69 -38.89 -0.30 -1.03 16 8 C -0.14 -2.13 5.28 -104.72 -0.55 -2.68 16 9 C 0.55 10.79 7.38 -12.25 -0.09 10.70 16 10 O -0.53 -12.35 16.46 5.34 0.09 -12.26 16 11 N -0.59 -11.44 2.86 -184.00 -0.53 -11.97 16 12 C 0.07 1.05 8.87 59.85 0.53 1.58 16 13 C 0.21 5.01 4.24 -5.19 -0.02 4.99 16 14 C -0.54 -14.87 9.94 -34.44 -0.34 -15.21 16 15 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 17 N -0.89 -26.97 13.96 55.43 0.77 -26.19 16 18 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 22 C 0.15 2.17 10.79 -17.18 -0.19 1.98 16 23 N -0.46 -6.08 9.52 -9.48 -0.09 -6.17 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.41 3.46 8.15 -40.82 -0.33 3.12 16 28 H 0.15 1.53 7.63 -52.49 -0.40 1.13 16 29 H 0.16 1.54 5.29 -52.49 -0.28 1.26 16 30 H 0.05 0.56 6.87 -51.93 -0.36 0.21 16 31 H 0.08 1.21 8.03 -51.93 -0.42 0.80 16 32 H 0.06 0.82 5.83 -51.93 -0.30 0.52 16 33 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 34 H 0.04 1.02 6.79 -51.93 -0.35 0.67 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.17 2.43 8.05 -52.49 -0.42 2.00 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -34.59 312.14 -5.56 -40.14 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.09 Total: 1.12 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -1.45 Total: 9.36 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.23 Total: -51.56 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.18 Total: -20.01 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.59 -5.56 -40.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343388737.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.679 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds