Wall clock time and date at job start Mon Mar 30 2020 02:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36826 * 119.99560 * 2 1 4 4 H 1.08004 * 119.99867 * 155.98095 * 3 2 1 5 5 C 1.39076 * 120.00339 * 335.97819 * 3 2 1 6 6 N 1.31340 * 119.99801 * 357.04079 * 5 3 2 7 7 Si 1.86799 * 120.00214 * 177.03926 * 5 3 2 8 8 H 1.48499 * 109.47012 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.46988 * 120.00057 * 7 5 3 10 10 H 1.48504 * 109.47125 * 240.00074 * 7 5 3 11 11 C 1.34769 * 120.00434 * 179.97438 * 2 1 3 12 12 O 1.21595 * 120.00520 * 175.26915 * 11 2 1 13 13 C 1.47762 * 119.99901 * 355.54179 * 11 2 1 14 14 C 1.39528 * 120.03899 * 186.29904 * 13 11 2 15 15 N 1.32024 * 119.94922 * 179.73201 * 14 13 11 16 16 C 1.32624 * 120.02018 * 0.54863 * 15 14 13 17 17 O 1.35494 * 119.96793 * 179.71102 * 16 15 14 18 18 C 1.42905 * 116.99796 * 0.02562 * 17 16 15 19 19 C 1.53008 * 109.46943 * 180.02562 * 18 17 16 20 20 C 1.53002 * 117.49513 * 243.74475 * 19 18 17 21 21 C 1.52997 * 117.49295 * 175.08880 * 19 18 17 22 22 C 1.39576 * 120.07010 * 359.72660 * 16 15 14 23 23 N 1.31573 * 120.04782 * 359.97438 * 22 16 15 24 24 H 1.09002 * 109.46865 * 216.39639 * 1 2 3 25 25 H 1.08999 * 109.47304 * 336.40194 * 1 2 3 26 26 H 1.09004 * 109.46735 * 96.40126 * 1 2 3 27 27 H 0.97002 * 120.00188 * 180.02562 * 6 5 3 28 28 H 1.08002 * 120.02323 * 0.02686 * 14 13 11 29 29 H 1.09001 * 109.47039 * 300.00210 * 18 17 16 30 30 H 1.08999 * 109.46966 * 60.00776 * 18 17 16 31 31 H 1.08992 * 115.55106 * 29.42134 * 19 18 17 32 32 H 1.08996 * 117.49778 * 0.02562 * 20 19 18 33 33 H 1.08999 * 117.48985 * 145.02303 * 20 19 18 34 34 H 1.09011 * 117.49474 * 214.97837 * 21 19 18 35 35 H 1.09001 * 117.50265 * 359.97438 * 21 19 18 36 36 H 1.07994 * 119.97220 * 180.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1850 0.0000 4 1 3.1589 1.2256 0.3807 5 6 1.5440 2.3373 -0.4903 6 7 0.3379 2.2768 -1.0067 7 14 2.4466 3.9709 -0.4144 8 1 3.7796 3.7714 0.2091 9 1 2.6176 4.5063 -1.7890 10 1 1.6600 4.9339 0.3976 11 6 2.1389 -1.1671 0.0005 12 8 3.3518 -1.1689 -0.0863 13 6 1.4036 -2.4448 0.1006 14 6 2.1031 -3.6447 0.2336 15 7 1.4441 -4.7848 0.3281 16 6 0.1185 -4.7905 0.2858 17 8 -0.5565 -5.9618 0.3770 18 6 0.2235 -7.1509 0.5177 19 6 -0.7059 -8.3633 0.6040 20 6 -0.6986 -9.1677 1.9054 21 6 -0.0578 -9.7487 0.6424 22 6 -0.5819 -3.5912 0.1470 23 7 0.0719 -2.4529 0.0584 24 1 -0.3633 -0.8272 0.6098 25 1 -0.3634 0.9417 0.4114 26 1 -0.3633 -0.1146 -1.0213 27 1 -0.0841 3.0804 -1.3490 28 1 3.1826 -3.6404 0.2640 29 1 0.8811 -7.2582 -0.3450 30 1 0.8229 -7.0868 1.4258 31 1 -1.6553 -8.2662 0.0776 32 1 -0.0320 -8.8330 2.7002 33 1 -1.6433 -9.6002 2.2349 34 1 -0.5813 -10.5632 0.1416 35 1 1.0305 -9.7965 0.6058 36 1 -1.6613 -3.5977 0.1130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351957826.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:00 Heat of formation + Delta-G solvation = 31.467343 kcal Electronic energy + Delta-G solvation = -20673.671253 eV Core-core repulsion = 17353.877095 eV Total energy + Delta-G solvation = -3319.794159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.01925 -39.01286 -37.92489 -36.90300 -34.87253 -33.81735 -31.69379 -30.62567 -27.85598 -26.37853 -25.04046 -24.24462 -23.38523 -22.71574 -20.94882 -20.03147 -18.52800 -17.73229 -16.92403 -16.35881 -16.10525 -15.84624 -15.15275 -14.67841 -14.45932 -14.29123 -14.21779 -13.82921 -13.37401 -13.17683 -12.41046 -12.12411 -11.98431 -11.78459 -11.56868 -11.47138 -11.38966 -11.07892 -10.83279 -10.82901 -10.59303 -10.38707 -10.23096 -10.06034 -9.13179 -8.97143 -8.42669 -8.34687 -7.74397 -6.41902 -3.96359 0.94256 1.35558 2.79902 3.08902 3.18847 3.25911 3.47895 3.57843 3.99600 4.24682 4.39056 4.44505 4.45178 4.55954 4.63744 4.76515 4.97583 5.05759 5.11828 5.28342 5.32181 5.39813 5.51993 5.54662 5.75750 5.76992 5.84770 5.88633 6.32159 6.95269 7.11938 7.18778 7.37688 7.43905 7.52885 7.95371 8.06199 8.39547 9.04587 9.28224 9.89288 10.52819 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.055688 B = 0.003286 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.684961 B = 8518.536337 C = 8902.141653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.402 5.402 3 C -0.295 4.295 4 H 0.105 0.895 5 C 0.030 3.970 6 N -0.861 5.861 7 Si 0.935 3.065 8 H -0.265 1.265 9 H -0.278 1.278 10 H -0.278 1.278 11 C 0.472 3.528 12 O -0.595 6.595 13 C 0.026 3.974 14 C 0.132 3.868 15 N -0.502 5.502 16 C 0.257 3.743 17 O -0.299 6.299 18 C 0.100 3.900 19 C -0.158 4.158 20 C -0.177 4.177 21 C -0.170 4.170 22 C 0.038 3.962 23 N -0.378 5.378 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.271 0.729 28 H 0.181 0.819 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.178 -16.508 3.371 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.116 5.116 3 C -0.424 4.424 4 H 0.122 0.878 5 C -0.175 4.175 6 N -0.499 5.499 7 Si 0.761 3.239 8 H -0.189 1.189 9 H -0.204 1.204 10 H -0.204 1.204 11 C 0.260 3.740 12 O -0.482 6.482 13 C -0.113 4.113 14 C -0.029 4.029 15 N -0.231 5.231 16 C 0.074 3.926 17 O -0.204 6.204 18 C 0.025 3.975 19 C -0.176 4.176 20 C -0.214 4.214 21 C -0.207 4.207 22 C -0.126 4.126 23 N -0.096 5.096 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.198 0.802 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.026 -16.395 3.245 17.452 hybrid contribution 0.295 0.646 -0.122 0.721 sum -4.731 -15.749 3.123 16.738 Atomic orbital electron populations 1.22296 0.79384 1.01608 1.01402 1.43678 1.06987 1.04357 1.56549 1.19939 1.00335 0.84069 1.38027 0.87775 1.25563 0.96200 1.00556 0.95202 1.70043 1.13366 1.29891 1.36558 0.85719 0.79642 0.80314 0.78246 1.18880 1.20373 1.20413 1.17169 0.86818 0.81970 0.88046 1.90622 1.12816 1.85856 1.58952 1.22572 0.89980 0.97242 1.01475 1.23389 1.01708 0.85748 0.92075 1.68094 1.07202 1.30828 1.16939 1.21098 0.89157 0.87377 0.94941 1.86164 1.34731 1.12533 1.87013 1.22138 0.92300 0.80719 1.02357 1.22162 1.01784 0.90946 1.02723 1.23117 1.03011 1.03744 0.91504 1.22997 1.00743 0.95294 1.01649 1.23156 1.01896 0.85519 1.02065 1.69341 1.08330 1.24628 1.07339 0.91204 0.90438 0.93310 0.91800 0.80243 0.91110 0.91401 0.86606 0.88492 0.88459 0.88227 0.88406 0.80955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.29 7.73 59.85 0.46 2.76 16 2 N -0.40 -10.67 3.01 -123.31 -0.37 -11.04 16 3 C -0.29 -8.16 9.25 -15.01 -0.14 -8.30 16 4 H 0.10 2.96 7.45 -52.48 -0.39 2.57 16 5 C 0.03 0.79 5.25 -17.45 -0.09 0.70 16 6 N -0.86 -22.54 10.32 55.50 0.57 -21.97 16 7 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 8 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 C 0.47 12.07 7.59 -12.37 -0.09 11.98 16 12 O -0.60 -16.60 16.09 5.28 0.08 -16.52 16 13 C 0.03 0.56 6.63 -82.88 -0.55 0.01 16 14 C 0.13 2.44 10.77 -16.99 -0.18 2.26 16 15 N -0.50 -8.45 9.37 -12.74 -0.12 -8.57 16 16 C 0.26 4.05 7.50 -16.71 -0.13 3.92 16 17 O -0.30 -4.09 10.12 -18.17 -0.18 -4.28 16 18 C 0.10 1.14 5.60 37.16 0.21 1.35 16 19 C -0.16 -1.42 6.06 -90.62 -0.55 -1.97 16 20 C -0.18 -1.35 10.18 -26.69 -0.27 -1.62 16 21 C -0.17 -1.22 10.25 -26.70 -0.27 -1.49 16 22 C 0.04 0.60 11.18 -17.16 -0.19 0.41 16 23 N -0.38 -7.30 6.14 -9.50 -0.06 -7.36 16 24 H 0.07 1.51 5.07 -55.01 -0.28 1.24 16 25 H 0.08 1.93 6.29 -51.93 -0.33 1.60 16 26 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16 27 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 28 H 0.18 3.16 7.65 -52.49 -0.40 2.76 16 29 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 30 H 0.07 0.78 7.84 -51.93 -0.41 0.38 16 31 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.17 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 311.28 15.07 4.69 4.69 Total: -1.00 -30.37 311.28 -6.51 -36.88 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.31 Total: 2.98 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -1.80 Total: 10.01 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.02 Total: -48.93 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.10 Total: -20.79 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.37 -6.51 -36.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351957826.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.350 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds