Wall clock time and date at job start Mon Mar 30 2020 02:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36826 * 119.99560 * 2 1 4 4 H 1.08004 * 119.99867 * 155.98095 * 3 2 1 5 5 C 1.39076 * 120.00339 * 335.97819 * 3 2 1 6 6 N 1.31340 * 119.99801 * 357.04079 * 5 3 2 7 7 Si 1.86799 * 120.00214 * 177.03926 * 5 3 2 8 8 H 1.48499 * 109.47012 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.46988 * 120.00057 * 7 5 3 10 10 H 1.48504 * 109.47125 * 240.00074 * 7 5 3 11 11 C 1.34769 * 120.00434 * 179.97438 * 2 1 3 12 12 O 1.21595 * 120.00520 * 175.26915 * 11 2 1 13 13 C 1.47762 * 119.99901 * 355.54179 * 11 2 1 14 14 C 1.39528 * 120.03899 * 186.29904 * 13 11 2 15 15 N 1.32024 * 119.94922 * 179.73201 * 14 13 11 16 16 C 1.32624 * 120.02018 * 0.54863 * 15 14 13 17 17 O 1.35494 * 119.96793 * 179.71102 * 16 15 14 18 18 C 1.42905 * 116.99796 * 0.02562 * 17 16 15 19 19 C 1.53008 * 109.46943 * 180.02562 * 18 17 16 20 20 C 1.53002 * 117.49513 * 243.74475 * 19 18 17 21 21 C 1.52997 * 117.49295 * 175.08880 * 19 18 17 22 22 C 1.39576 * 120.07010 * 359.72660 * 16 15 14 23 23 N 1.31573 * 120.04782 * 359.97438 * 22 16 15 24 24 H 1.09002 * 109.46865 * 216.39639 * 1 2 3 25 25 H 1.08999 * 109.47304 * 336.40194 * 1 2 3 26 26 H 1.09004 * 109.46735 * 96.40126 * 1 2 3 27 27 H 0.97002 * 120.00188 * 180.02562 * 6 5 3 28 28 H 1.08002 * 120.02323 * 0.02686 * 14 13 11 29 29 H 1.09001 * 109.47039 * 300.00210 * 18 17 16 30 30 H 1.08999 * 109.46966 * 60.00776 * 18 17 16 31 31 H 1.08992 * 115.55106 * 29.42134 * 19 18 17 32 32 H 1.08996 * 117.49778 * 0.02562 * 20 19 18 33 33 H 1.08999 * 117.48985 * 145.02303 * 20 19 18 34 34 H 1.09011 * 117.49474 * 214.97837 * 21 19 18 35 35 H 1.09001 * 117.50265 * 359.97438 * 21 19 18 36 36 H 1.07994 * 119.97220 * 180.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1850 0.0000 4 1 3.1589 1.2256 0.3807 5 6 1.5440 2.3373 -0.4903 6 7 0.3379 2.2768 -1.0067 7 14 2.4466 3.9709 -0.4144 8 1 3.7796 3.7714 0.2091 9 1 2.6176 4.5063 -1.7890 10 1 1.6600 4.9339 0.3976 11 6 2.1389 -1.1671 0.0005 12 8 3.3518 -1.1689 -0.0863 13 6 1.4036 -2.4448 0.1006 14 6 2.1031 -3.6447 0.2336 15 7 1.4441 -4.7848 0.3281 16 6 0.1185 -4.7905 0.2858 17 8 -0.5565 -5.9618 0.3770 18 6 0.2235 -7.1509 0.5177 19 6 -0.7059 -8.3633 0.6040 20 6 -0.6986 -9.1677 1.9054 21 6 -0.0578 -9.7487 0.6424 22 6 -0.5819 -3.5912 0.1470 23 7 0.0719 -2.4529 0.0584 24 1 -0.3633 -0.8272 0.6098 25 1 -0.3634 0.9417 0.4114 26 1 -0.3633 -0.1146 -1.0213 27 1 -0.0841 3.0804 -1.3490 28 1 3.1826 -3.6404 0.2640 29 1 0.8811 -7.2582 -0.3450 30 1 0.8229 -7.0868 1.4258 31 1 -1.6553 -8.2662 0.0776 32 1 -0.0320 -8.8330 2.7002 33 1 -1.6433 -9.6002 2.2349 34 1 -0.5813 -10.5632 0.1416 35 1 1.0305 -9.7965 0.6058 36 1 -1.6613 -3.5977 0.1130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351957826.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:59 Heat of formation + Delta-G solvation = 11.052931 kcal Electronic energy + Delta-G solvation = -20674.556489 eV Core-core repulsion = 17353.877095 eV Total energy + Delta-G solvation = -3320.679394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.46860 -40.46016 -39.44045 -37.77430 -36.84970 -35.31851 -33.62845 -32.09362 -28.94580 -28.28673 -26.81690 -25.62833 -25.01071 -23.27518 -21.83136 -21.69479 -19.77679 -19.31356 -18.75352 -17.82603 -17.48804 -17.20625 -16.62312 -16.20990 -15.90968 -15.83780 -15.41226 -15.25017 -14.82444 -14.45658 -14.10424 -13.76919 -13.56063 -13.30201 -12.92955 -12.79704 -12.58713 -12.39354 -12.37164 -12.15091 -12.09589 -11.71948 -11.42748 -11.03272 -10.96112 -10.87500 -10.10387 -9.85595 -9.67735 -8.35006 -6.04496 -0.53523 -0.06434 1.37817 1.41498 1.56581 1.64713 1.90633 2.22493 2.68949 2.76196 2.81733 2.94972 3.13147 3.22951 3.42655 3.75745 3.90664 3.95583 4.02644 4.21154 4.23363 4.44542 4.52429 4.54626 4.77851 4.83552 5.00544 5.07381 5.19280 5.23551 5.26476 5.38806 5.54568 5.89860 5.99858 6.04787 6.37491 6.59620 7.05021 7.33351 7.90978 8.59133 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.055688 B = 0.003286 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.684961 B = 8518.536337 C = 8902.141653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.424 5.424 3 C -0.342 4.342 4 H 0.082 0.918 5 C -0.003 4.003 6 N -0.883 5.883 7 Si 1.001 2.999 8 H -0.270 1.270 9 H -0.272 1.272 10 H -0.263 1.263 11 C 0.469 3.531 12 O -0.629 6.629 13 C -0.003 4.003 14 C 0.143 3.857 15 N -0.501 5.501 16 C 0.280 3.720 17 O -0.290 6.290 18 C 0.095 3.905 19 C -0.172 4.172 20 C -0.175 4.175 21 C -0.159 4.159 22 C 0.050 3.950 23 N -0.390 5.390 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.033 0.967 27 H 0.278 0.722 28 H 0.184 0.816 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 -18.537 3.647 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.139 5.139 3 C -0.470 4.470 4 H 0.100 0.900 5 C -0.206 4.206 6 N -0.520 5.520 7 Si 0.824 3.176 8 H -0.194 1.194 9 H -0.197 1.197 10 H -0.187 1.187 11 C 0.258 3.742 12 O -0.518 6.518 13 C -0.140 4.140 14 C -0.016 4.016 15 N -0.231 5.231 16 C 0.096 3.904 17 O -0.195 6.195 18 C 0.020 3.980 19 C -0.190 4.190 20 C -0.212 4.212 21 C -0.196 4.196 22 C -0.117 4.117 23 N -0.108 5.108 24 H 0.111 0.889 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.201 0.799 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.119 0.881 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -6.493 -18.434 3.525 19.859 hybrid contribution 0.626 0.864 -0.190 1.084 sum -5.867 -17.570 3.334 18.822 Atomic orbital electron populations 1.22133 0.78195 1.01593 1.00690 1.43862 1.07796 1.04425 1.57794 1.19905 1.00294 0.85706 1.41111 0.90039 1.26357 0.96908 1.03278 0.94086 1.70113 1.14148 1.31045 1.36739 0.84764 0.78267 0.76149 0.78467 1.19385 1.19742 1.18724 1.17807 0.86781 0.83263 0.86345 1.90564 1.14501 1.86936 1.59809 1.21930 0.90883 0.95806 1.05387 1.23333 1.01907 0.85303 0.91096 1.68194 1.07834 1.29626 1.17402 1.21350 0.88798 0.88418 0.91878 1.86211 1.34822 1.12513 1.85914 1.22384 0.92907 0.80392 1.02276 1.22133 1.01793 0.90676 1.04400 1.23212 1.03689 1.03085 0.91209 1.23115 1.01093 0.94337 1.01047 1.23739 1.03447 0.84365 1.00154 1.69088 1.07588 1.26734 1.07365 0.88948 0.92051 0.94821 0.91201 0.79891 0.91238 0.91448 0.86274 0.88632 0.87231 0.86673 0.88126 0.76910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.69 7.73 127.77 0.99 6.67 16 2 N -0.42 -23.44 3.01 -662.30 -2.00 -25.43 16 3 C -0.34 -19.82 9.25 84.12 0.78 -19.04 16 4 H 0.08 4.93 7.45 -2.91 -0.02 4.91 16 5 C 0.00 -0.16 5.25 84.97 0.45 0.29 16 6 N -0.88 -47.13 10.32 21.68 0.22 -46.90 16 7 Si 1.00 42.14 29.55 68.60 2.03 44.17 16 8 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 9 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 11 C 0.47 24.87 7.59 86.76 0.66 25.53 16 12 O -0.63 -36.65 16.09 -4.02 -0.06 -36.71 16 13 C 0.00 -0.14 6.63 41.76 0.28 0.14 16 14 C 0.14 5.21 10.77 84.98 0.91 6.13 16 15 N -0.50 -15.87 9.37 -306.99 -2.88 -18.75 16 16 C 0.28 8.00 7.50 84.90 0.64 8.64 16 17 O -0.29 -6.96 10.12 -87.95 -0.89 -7.85 16 18 C 0.10 1.91 5.60 71.98 0.40 2.31 16 19 C -0.17 -2.57 6.06 -10.79 -0.07 -2.64 16 20 C -0.18 -2.14 10.18 30.62 0.31 -1.83 16 21 C -0.16 -1.78 10.25 30.62 0.31 -1.47 16 22 C 0.05 1.43 11.18 85.05 0.95 2.38 16 23 N -0.39 -14.58 6.14 -183.96 -1.13 -15.71 16 24 H 0.09 4.01 5.07 -8.47 -0.04 3.96 16 25 H 0.06 3.14 6.29 -2.39 -0.02 3.12 16 26 H 0.03 1.69 7.98 -2.38 -0.02 1.67 16 27 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 28 H 0.18 6.48 7.65 -2.91 -0.02 6.46 16 29 H 0.07 1.43 8.11 -2.39 -0.02 1.41 16 30 H 0.07 1.38 7.84 -2.39 -0.02 1.36 16 31 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 1.20 8.03 -2.39 -0.02 1.18 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.21 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -67.70 311.28 2.98 -64.73 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 1.07 Total: 15.37 kcal Atomic # 6 Polarization: 20.48 SS G_CDS: 6.61 Total: 27.10 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -5.78 Total: -106.80 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.95 Total: -44.56 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -67.70 2.98 -64.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351957826.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.779 kcal (2) G-P(sol) polarization free energy of solvation -67.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds