Wall clock time and date at job start Mon Mar 30 2020 02:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35724 * 117.00204 * 2 1 4 4 C 1.39450 * 120.80709 * 179.97438 * 3 2 1 5 5 N 1.31954 * 119.08173 * 180.02562 * 4 3 2 6 6 C 1.32541 * 120.83850 * 359.97438 * 5 4 3 7 7 C 1.48293 * 119.11196 * 179.97438 * 6 5 4 8 8 O 1.21501 * 119.99976 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99932 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47002 * 184.66830 * 10 9 7 12 12 C 1.50696 * 115.55193 * 297.93943 * 11 10 9 13 13 H 1.08001 * 120.00063 * 95.21366 * 12 11 10 14 14 C 1.37879 * 119.99802 * 275.21021 * 12 11 10 15 15 N 1.31514 * 119.99885 * 7.13436 * 14 12 11 16 16 Si 1.86800 * 119.99770 * 187.13201 * 14 12 11 17 17 H 1.48503 * 109.46796 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47212 * 300.00012 * 16 14 12 19 19 H 1.48498 * 109.47212 * 60.00416 * 16 14 12 20 20 C 1.53008 * 117.49664 * 83.60874 * 11 10 9 21 21 C 1.53000 * 117.49581 * 152.26424 * 11 10 9 22 22 N 1.32537 * 121.77577 * 0.26705 * 6 5 4 23 23 C 1.31954 * 120.83700 * 359.47307 * 22 6 5 24 24 H 1.08998 * 109.46935 * 59.99971 * 1 2 3 25 25 H 1.08996 * 109.47433 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47086 * 300.00474 * 1 2 3 27 27 H 1.07994 * 120.45930 * 0.02562 * 4 3 2 28 28 H 0.97003 * 119.99966 * 0.02562 * 9 7 6 29 29 H 1.08996 * 109.47106 * 64.66760 * 10 9 7 30 30 H 1.08998 * 109.46754 * 304.66975 * 10 9 7 31 31 H 0.97004 * 120.00131 * 355.39941 * 15 14 12 32 32 H 1.08998 * 117.49575 * 215.00498 * 20 11 10 33 33 H 1.08997 * 117.50012 * 0.02562 * 20 11 10 34 34 H 1.09003 * 117.50343 * 359.97438 * 21 11 10 35 35 H 1.08997 * 117.49643 * 144.97660 * 21 11 10 36 36 H 1.08002 * 120.46301 * 180.26248 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4367 1.3018 0.0005 5 7 4.0001 2.4950 0.0010 6 6 3.2612 3.5953 0.0005 7 6 3.9345 4.9166 0.0017 8 8 5.1478 4.9801 0.0026 9 7 3.2005 6.0470 0.0017 10 6 3.8657 7.3523 0.0023 11 6 2.8162 8.4594 0.1196 12 6 1.8224 8.5354 -1.0107 13 1 0.8641 8.0454 -0.9211 14 6 2.1366 9.2306 -2.1592 15 7 3.3505 9.7077 -2.3278 16 14 0.8379 9.4948 -3.4757 17 1 1.4243 10.2651 -4.6018 18 1 0.3613 8.1788 -3.9720 19 1 -0.3039 10.2500 -2.9003 20 6 2.3195 8.8163 1.5221 21 6 3.2470 9.7750 0.7712 22 7 1.9367 3.5466 0.0047 23 6 1.3024 2.3895 -0.0008 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 4.0447 0.4093 0.0005 28 1 2.2318 5.9962 0.0013 29 1 4.4227 7.4766 -0.9263 30 1 4.5512 7.4103 0.8478 31 1 4.0056 9.6290 -1.6168 32 1 1.2740 9.1060 1.6272 33 1 2.7407 8.2626 2.3612 34 1 4.2780 9.8516 1.1168 35 1 2.8119 10.6955 0.3821 36 1 0.2229 2.3568 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352646136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:02 Heat of formation + Delta-G solvation = 2.716227 kcal Electronic energy + Delta-G solvation = -20857.192625 eV Core-core repulsion = 17536.151724 eV Total energy + Delta-G solvation = -3321.040901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.54434 -39.36291 -38.41299 -36.91037 -34.28090 -33.23596 -31.91299 -31.42020 -28.32875 -26.63887 -25.01527 -24.79076 -23.91054 -21.40464 -20.58734 -19.68939 -18.60822 -18.28460 -17.95280 -16.55998 -16.48690 -15.44394 -15.21305 -15.20088 -14.78981 -14.16652 -13.94484 -13.78395 -13.75839 -13.09539 -12.75821 -12.68891 -12.36441 -12.01961 -11.68488 -11.65938 -11.16954 -10.95118 -10.81228 -10.48764 -10.13979 -9.84914 -9.56625 -9.42966 -9.02403 -8.70584 -8.48883 -8.40837 -8.21921 -6.38698 -4.14535 0.40650 0.80223 2.60220 2.86614 3.20497 3.41278 3.41993 3.61176 3.84968 3.89401 3.94115 4.37210 4.45523 4.49785 4.67948 4.71871 4.98524 5.04407 5.19967 5.30016 5.37741 5.79718 5.83722 6.14195 6.23760 6.35909 6.43520 6.54156 6.62676 6.79619 6.85264 7.06848 7.17515 7.23708 7.70813 8.17597 8.21017 8.35627 8.68893 8.82574 9.61429 11.00699 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019041 B = 0.004519 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.184064 B = 6194.394672 C = 6881.883256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.300 6.300 3 C 0.035 3.965 4 C 0.121 3.879 5 N -0.430 5.430 6 C 0.253 3.747 7 C 0.574 3.426 8 O -0.524 6.524 9 N -0.674 5.674 10 C 0.157 3.843 11 C 0.004 3.996 12 C -0.576 4.576 13 H 0.054 0.946 14 C 0.030 3.970 15 N -0.900 5.900 16 Si 1.066 2.934 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.288 1.288 20 C -0.193 4.193 21 C -0.171 4.171 22 N -0.451 5.451 23 C 0.065 3.935 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.182 0.818 28 H 0.414 0.586 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.276 0.724 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.231 -17.078 5.338 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.210 6.210 3 C -0.016 4.016 4 C -0.048 4.048 5 N -0.145 5.145 6 C -0.016 4.016 7 C 0.354 3.646 8 O -0.399 6.399 9 N -0.325 5.325 10 C 0.034 3.966 11 C 0.003 3.997 12 C -0.614 4.614 13 H 0.072 0.928 14 C -0.177 4.177 15 N -0.533 5.533 16 Si 0.895 3.105 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.214 1.214 20 C -0.230 4.230 21 C -0.209 4.209 22 N -0.168 5.168 23 C -0.103 4.103 24 H 0.081 0.919 25 H 0.126 0.874 26 H 0.080 0.920 27 H 0.199 0.801 28 H 0.250 0.750 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.038 -15.636 3.819 17.191 hybrid contribution -1.040 -1.477 1.538 2.372 sum -7.078 -17.113 5.356 19.278 Atomic orbital electron populations 1.23246 0.77419 1.04896 1.02060 1.86071 1.22146 1.25007 1.87793 1.21218 0.95260 0.86818 0.98298 1.22884 0.89214 0.96363 0.96354 1.68306 1.39795 0.97542 1.08827 1.23016 0.85955 0.94558 0.98082 1.17134 0.86374 0.81929 0.79120 1.90775 1.12763 1.86247 1.50083 1.45726 1.11437 1.04769 1.70525 1.21160 0.94418 0.80623 1.00396 1.19308 0.96506 0.91746 0.92097 1.21182 1.01405 1.37580 1.01190 0.92757 1.25762 0.99492 0.93334 0.99114 1.70737 1.03277 1.44252 1.35077 0.83581 0.74629 0.76485 0.75848 1.20802 1.21527 1.21423 1.22902 0.98841 1.05330 0.95937 1.22755 0.97440 0.95675 1.05001 1.68221 1.10350 1.28847 1.09339 1.23478 1.01362 0.86642 0.98814 0.91914 0.87423 0.91983 0.80080 0.74978 0.91385 0.93622 0.91266 0.89977 0.91368 0.91211 0.89483 0.80661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.84 101.05 0.99 1.08 16 2 O -0.30 -2.54 10.51 -18.88 -0.20 -2.74 16 3 C 0.04 0.38 6.75 -38.68 -0.26 0.12 16 4 C 0.12 1.48 11.28 -17.05 -0.19 1.29 16 5 N -0.43 -7.14 10.11 -11.03 -0.11 -7.25 16 6 C 0.25 4.54 7.59 -157.05 -1.19 3.35 16 7 C 0.57 12.12 7.84 -12.13 -0.10 12.02 16 8 O -0.52 -12.52 16.86 5.36 0.09 -12.43 16 9 N -0.67 -14.26 5.44 -61.10 -0.33 -14.59 16 10 C 0.16 3.61 5.43 -4.04 -0.02 3.59 16 11 C 0.00 0.10 0.99 -155.66 -0.15 -0.05 16 12 C -0.58 -15.07 8.44 -34.44 -0.29 -15.36 16 13 H 0.05 1.42 7.82 -52.49 -0.41 1.00 16 14 C 0.03 0.81 5.39 -17.82 -0.10 0.71 16 15 N -0.90 -25.98 13.57 55.43 0.75 -25.23 16 16 Si 1.07 24.31 29.91 -169.99 -5.08 19.23 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 20 C -0.19 -4.02 9.96 -26.69 -0.27 -4.28 16 21 C -0.17 -3.80 8.74 -26.69 -0.23 -4.03 16 22 N -0.45 -7.03 9.55 -11.03 -0.11 -7.13 16 23 C 0.07 0.75 10.31 -17.05 -0.18 0.57 16 24 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 25 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.23 7.71 -51.93 -0.40 -0.17 16 27 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 28 H 0.41 8.43 7.52 -40.82 -0.31 8.13 16 29 H 0.07 1.74 7.82 -51.93 -0.41 1.34 16 30 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 31 H 0.28 7.91 6.19 -40.82 -0.25 7.66 16 32 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 36 H 0.18 1.35 6.47 -52.49 -0.34 1.01 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -32.63 317.91 -6.45 -39.08 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.27 Total: 7.26 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.98 Total: -0.99 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.20 Total: -54.20 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.11 Total: -15.17 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.23 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.63 -6.45 -39.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352646136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.800 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds