Wall clock time and date at job start Mon Mar 30 2020 02:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35724 * 117.00204 * 2 1 4 4 C 1.39450 * 120.80709 * 179.97438 * 3 2 1 5 5 N 1.31954 * 119.08173 * 180.02562 * 4 3 2 6 6 C 1.32541 * 120.83850 * 359.97438 * 5 4 3 7 7 C 1.48293 * 119.11196 * 179.97438 * 6 5 4 8 8 O 1.21501 * 119.99976 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99932 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47002 * 184.66830 * 10 9 7 12 12 C 1.50696 * 115.55193 * 297.93943 * 11 10 9 13 13 H 1.08001 * 120.00063 * 95.21366 * 12 11 10 14 14 C 1.37879 * 119.99802 * 275.21021 * 12 11 10 15 15 N 1.31514 * 119.99885 * 7.13436 * 14 12 11 16 16 Si 1.86800 * 119.99770 * 187.13201 * 14 12 11 17 17 H 1.48503 * 109.46796 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47212 * 300.00012 * 16 14 12 19 19 H 1.48498 * 109.47212 * 60.00416 * 16 14 12 20 20 C 1.53008 * 117.49664 * 83.60874 * 11 10 9 21 21 C 1.53000 * 117.49581 * 152.26424 * 11 10 9 22 22 N 1.32537 * 121.77577 * 0.26705 * 6 5 4 23 23 C 1.31954 * 120.83700 * 359.47307 * 22 6 5 24 24 H 1.08998 * 109.46935 * 59.99971 * 1 2 3 25 25 H 1.08996 * 109.47433 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47086 * 300.00474 * 1 2 3 27 27 H 1.07994 * 120.45930 * 0.02562 * 4 3 2 28 28 H 0.97003 * 119.99966 * 0.02562 * 9 7 6 29 29 H 1.08996 * 109.47106 * 64.66760 * 10 9 7 30 30 H 1.08998 * 109.46754 * 304.66975 * 10 9 7 31 31 H 0.97004 * 120.00131 * 355.39941 * 15 14 12 32 32 H 1.08998 * 117.49575 * 215.00498 * 20 11 10 33 33 H 1.08997 * 117.50012 * 0.02562 * 20 11 10 34 34 H 1.09003 * 117.50343 * 359.97438 * 21 11 10 35 35 H 1.08997 * 117.49643 * 144.97660 * 21 11 10 36 36 H 1.08002 * 120.46301 * 180.26248 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4367 1.3018 0.0005 5 7 4.0001 2.4950 0.0010 6 6 3.2612 3.5953 0.0005 7 6 3.9345 4.9166 0.0017 8 8 5.1478 4.9801 0.0026 9 7 3.2005 6.0470 0.0017 10 6 3.8657 7.3523 0.0023 11 6 2.8162 8.4594 0.1196 12 6 1.8224 8.5354 -1.0107 13 1 0.8641 8.0454 -0.9211 14 6 2.1366 9.2306 -2.1592 15 7 3.3505 9.7077 -2.3278 16 14 0.8379 9.4948 -3.4757 17 1 1.4243 10.2651 -4.6018 18 1 0.3613 8.1788 -3.9720 19 1 -0.3039 10.2500 -2.9003 20 6 2.3195 8.8163 1.5221 21 6 3.2470 9.7750 0.7712 22 7 1.9367 3.5466 0.0047 23 6 1.3024 2.3895 -0.0008 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 4.0447 0.4093 0.0005 28 1 2.2318 5.9962 0.0013 29 1 4.4227 7.4766 -0.9263 30 1 4.5512 7.4103 0.8478 31 1 4.0056 9.6290 -1.6168 32 1 1.2740 9.1060 1.6272 33 1 2.7407 8.2626 2.3612 34 1 4.2780 9.8516 1.1168 35 1 2.8119 10.6955 0.3821 36 1 0.2229 2.3568 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352646136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:02 Heat of formation + Delta-G solvation = -20.944156 kcal Electronic energy + Delta-G solvation = -20858.218616 eV Core-core repulsion = 17536.151724 eV Total energy + Delta-G solvation = -3322.066892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.58472 -40.69729 -39.53851 -38.69105 -35.57281 -34.74482 -33.92949 -32.43982 -29.13214 -28.05878 -26.93131 -25.92831 -25.03691 -23.12839 -22.05136 -21.57639 -19.66577 -19.29866 -19.21679 -18.36557 -17.29499 -16.94964 -16.57408 -16.48678 -15.76218 -15.63575 -15.56812 -15.21027 -14.78824 -14.65539 -14.56585 -14.26217 -13.61662 -13.45426 -12.83932 -12.61677 -12.56760 -12.46359 -12.26287 -12.21998 -11.94710 -11.58875 -11.29764 -10.57669 -10.48981 -10.44248 -10.32940 -10.11846 -9.81845 -8.51228 -6.26733 -0.70255 -0.14456 1.48545 1.56689 1.63366 1.69096 1.81840 1.99438 2.60625 2.63945 2.78056 3.02342 3.18560 3.25372 3.39336 3.61038 3.87547 4.03522 4.31927 4.34511 4.38696 4.44365 4.51398 4.53770 4.74664 4.78140 4.84544 4.86531 5.06132 5.29199 5.39573 5.47259 5.54951 5.96725 6.15492 6.27113 6.38799 6.71249 6.78699 7.07034 7.56285 8.88741 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019041 B = 0.004519 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.184064 B = 6194.394672 C = 6881.883256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.297 6.297 3 C 0.068 3.932 4 C 0.111 3.889 5 N -0.458 5.458 6 C 0.219 3.781 7 C 0.572 3.428 8 O -0.564 6.564 9 N -0.673 5.673 10 C 0.171 3.829 11 C -0.022 4.022 12 C -0.576 4.576 13 H 0.053 0.947 14 C -0.019 4.019 15 N -0.931 5.931 16 Si 1.109 2.891 17 H -0.291 1.291 18 H -0.275 1.275 19 H -0.269 1.269 20 C -0.164 4.164 21 C -0.173 4.173 22 N -0.463 5.463 23 C 0.062 3.938 24 H 0.074 0.926 25 H 0.132 0.868 26 H 0.076 0.924 27 H 0.214 0.786 28 H 0.417 0.583 29 H 0.030 0.970 30 H 0.050 0.950 31 H 0.265 0.735 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.894 -19.456 5.984 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.206 6.206 3 C 0.015 3.985 4 C -0.057 4.057 5 N -0.173 5.173 6 C -0.049 4.049 7 C 0.355 3.645 8 O -0.442 6.442 9 N -0.323 5.323 10 C 0.047 3.953 11 C -0.022 4.022 12 C -0.613 4.613 13 H 0.071 0.929 14 C -0.219 4.219 15 N -0.567 5.567 16 Si 0.932 3.068 17 H -0.217 1.217 18 H -0.201 1.201 19 H -0.194 1.194 20 C -0.201 4.201 21 C -0.211 4.211 22 N -0.180 5.180 23 C -0.106 4.106 24 H 0.093 0.907 25 H 0.150 0.850 26 H 0.095 0.905 27 H 0.230 0.770 28 H 0.255 0.745 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -8.744 -18.048 4.490 20.551 hybrid contribution -0.350 -0.999 1.383 1.742 sum -9.094 -19.047 5.873 21.909 Atomic orbital electron populations 1.23686 0.74874 1.07091 1.03357 1.86113 1.24609 1.23428 1.86486 1.21152 0.94834 0.87537 0.94939 1.23385 0.90628 0.95776 0.95941 1.68182 1.40941 0.98535 1.09652 1.22132 0.86913 0.93253 1.02567 1.17622 0.86052 0.83168 0.77612 1.90726 1.14481 1.87197 1.51787 1.45615 1.11458 1.04350 1.70841 1.20819 0.94205 0.81649 0.98618 1.19309 0.97014 0.92627 0.93297 1.21451 1.01628 1.36460 1.01796 0.92853 1.27011 1.00273 0.93129 1.01530 1.70839 1.04184 1.46517 1.35165 0.83030 0.73126 0.77051 0.73608 1.21743 1.20099 1.19411 1.22911 0.98948 1.03425 0.94783 1.22703 0.98541 0.94561 1.05310 1.68128 1.09253 1.30965 1.09661 1.24115 1.03012 0.85652 0.97822 0.90730 0.84980 0.90494 0.76987 0.74543 0.95141 0.93153 0.92430 0.89342 0.89122 0.89954 0.91241 0.76732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.84 113.37 1.12 1.13 16 2 O -0.30 -3.78 10.51 -90.47 -0.95 -4.73 16 3 C 0.07 1.24 6.75 22.85 0.15 1.40 16 4 C 0.11 2.50 11.28 84.97 0.96 3.46 16 5 N -0.46 -15.13 10.11 -188.82 -1.91 -17.04 16 6 C 0.22 7.92 7.59 137.56 1.04 8.97 16 7 C 0.57 25.04 7.84 86.92 0.68 25.72 16 8 O -0.56 -28.28 16.86 -3.72 -0.06 -28.34 16 9 N -0.67 -29.16 5.44 -465.53 -2.53 -31.69 16 10 C 0.17 8.12 5.43 86.38 0.47 8.59 16 11 C -0.02 -1.03 0.99 -52.93 -0.05 -1.08 16 12 C -0.58 -30.24 8.44 25.60 0.22 -30.03 16 13 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 14 C -0.02 -1.04 5.39 84.66 0.46 -0.58 16 15 N -0.93 -55.28 13.57 21.45 0.29 -54.99 16 16 Si 1.11 48.93 29.91 68.60 2.05 50.98 16 17 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 18 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 C -0.16 -6.60 9.96 30.62 0.30 -6.29 16 21 C -0.17 -7.73 8.74 30.62 0.27 -7.46 16 22 N -0.46 -13.90 9.55 -188.81 -1.80 -15.71 16 23 C 0.06 1.24 10.31 84.97 0.88 2.11 16 24 H 0.07 0.24 7.71 -2.39 -0.02 0.22 16 25 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.08 0.20 7.71 -2.39 -0.02 0.18 16 27 H 0.21 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.42 17.19 7.52 -92.71 -0.70 16.49 16 29 H 0.03 1.65 7.82 -2.39 -0.02 1.63 16 30 H 0.05 2.30 8.11 -2.39 -0.02 2.28 16 31 H 0.27 15.83 6.19 -92.71 -0.57 15.26 16 32 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 33 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.22 2.35 6.47 -2.91 -0.02 2.33 16 Total: -1.00 -73.58 317.91 2.18 -71.39 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.61 Total: 24.19 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.49 Total: 5.93 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -5.96 Total: -119.43 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.01 Total: -33.07 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.05 Total: 50.98 kcal Total: -73.58 2.18 -71.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352646136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.451 kcal (2) G-P(sol) polarization free energy of solvation -73.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds