Wall clock time and date at job start Mon Mar 30 2020 01:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46877 * 2 1 4 4 C 1.36900 * 119.99962 * 281.75083 * 3 2 1 5 5 H 1.08008 * 119.99861 * 170.08702 * 4 3 2 6 6 C 1.39020 * 120.00268 * 350.08644 * 4 3 2 7 7 N 1.31382 * 119.99618 * 17.33401 * 6 4 3 8 8 Si 1.86798 * 120.00076 * 197.32970 * 6 4 3 9 9 H 1.48498 * 109.46790 * 60.00247 * 8 6 4 10 10 H 1.48506 * 109.46984 * 179.97438 * 8 6 4 11 11 H 1.48490 * 109.47364 * 300.00268 * 8 6 4 12 12 C 1.34782 * 119.99941 * 101.75398 * 3 2 1 13 13 O 1.21622 * 119.99597 * 187.07123 * 12 3 2 14 14 C 1.47469 * 120.00153 * 7.06717 * 12 3 2 15 15 C 1.39814 * 120.07998 * 141.62254 * 14 12 3 16 16 C 1.37644 * 119.91978 * 180.27570 * 15 14 12 17 17 C 1.39149 * 120.07951 * 359.49921 * 16 15 14 18 18 N 1.39434 * 119.92254 * 180.23099 * 17 16 15 19 19 C 1.34773 * 120.00113 * 33.86543 * 18 17 16 20 20 N 1.34776 * 120.00192 * 185.17374 * 19 18 17 21 21 O 1.21585 * 120.00026 * 5.17272 * 19 18 17 22 22 C 1.39152 * 120.15870 * 0.50374 * 17 16 15 23 23 C 1.37645 * 120.08293 * 359.75016 * 22 17 16 24 24 H 1.09002 * 109.46897 * 316.53766 * 1 2 3 25 25 H 1.08992 * 109.47418 * 76.54129 * 1 2 3 26 26 H 1.09003 * 109.46960 * 196.54080 * 1 2 3 27 27 H 1.09004 * 109.47333 * 240.00410 * 2 1 3 28 28 H 1.08999 * 109.47534 * 120.00244 * 2 1 3 29 29 H 0.97008 * 119.99517 * 180.02562 * 7 6 4 30 30 H 1.08003 * 120.04003 * 0.02562 * 15 14 12 31 31 H 1.08003 * 119.96063 * 179.72417 * 16 15 14 32 32 H 0.97008 * 120.00310 * 213.86567 * 18 17 16 33 33 H 0.96996 * 120.00512 * 359.97438 * 20 19 18 34 34 H 0.97006 * 119.99850 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.96112 * 179.72893 * 22 17 16 36 36 H 1.07999 * 120.04024 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.0187 2.1071 -1.1607 5 1 2.2247 3.1670 -1.1348 6 6 1.7541 1.4799 -2.3729 7 7 1.1786 0.2990 -2.3896 8 14 2.2168 2.3163 -3.9778 9 1 3.6826 2.5522 -4.0084 10 1 1.8320 1.4464 -5.1182 11 1 1.5042 3.6148 -4.0827 12 6 2.4670 1.9374 1.1428 13 8 2.7511 3.1196 1.1730 14 6 2.6135 1.1125 2.3564 15 6 3.6992 1.3141 3.2139 16 6 3.8357 0.5384 4.3427 17 6 2.8892 -0.4384 4.6364 18 7 3.0282 -1.2190 5.7834 19 6 3.5669 -0.6879 6.8988 20 7 3.7975 -1.4682 7.9732 21 8 3.8449 0.4951 6.9358 22 6 1.8073 -0.6419 3.7853 23 6 1.6671 0.1265 2.6519 24 1 -0.3633 0.7459 0.7069 25 1 -0.3634 0.2392 -0.9994 26 1 -0.3633 -0.9852 0.2926 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.9943 -0.1388 -3.2354 30 1 4.4321 2.0747 2.9887 31 1 4.6766 0.6906 5.0033 32 1 2.7371 -2.1443 5.7786 33 1 3.5754 -2.4120 7.9440 34 1 4.1849 -1.0859 8.7762 35 1 1.0769 -1.4038 4.0140 36 1 0.8274 -0.0323 1.9915 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354184977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:02 Heat of formation + Delta-G solvation = 1.103192 kcal Electronic energy + Delta-G solvation = -21313.377450 eV Core-core repulsion = 17992.266603 eV Total energy + Delta-G solvation = -3321.110847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60222 -39.25847 -37.46777 -35.18757 -34.62567 -33.77270 -31.92381 -30.56964 -29.54069 -29.01046 -25.22654 -23.35255 -22.43475 -22.02726 -20.95771 -19.42355 -18.50582 -18.08702 -16.94187 -16.38279 -16.18994 -15.42972 -14.96597 -14.67119 -14.27072 -14.10631 -14.02035 -13.49174 -13.42213 -12.78555 -12.48047 -12.43530 -11.87928 -11.53935 -11.22783 -11.11381 -10.80745 -10.67998 -10.43927 -10.35465 -10.22360 -10.09487 -9.92314 -9.75084 -8.81398 -8.48220 -8.43419 -7.81978 -7.70316 -6.28786 -3.78878 1.43715 1.82577 2.66468 2.97779 3.18768 3.23290 3.28559 3.81384 4.08393 4.20134 4.43692 4.88498 5.10471 5.23212 5.32526 5.65541 5.74727 5.81583 5.86945 6.21031 6.32464 6.43899 6.51258 6.58263 6.62489 6.71124 6.74050 6.78335 6.84221 7.04017 7.35114 7.36364 7.62823 7.68538 7.75167 8.08411 8.37957 8.52619 9.16419 9.42367 10.00100 10.59078 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039561 B = 0.004119 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.592946 B = 6796.838859 C = 7257.512922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.087 3.913 3 N -0.429 5.429 4 C -0.293 4.293 5 H 0.106 0.894 6 C 0.027 3.973 7 N -0.869 5.869 8 Si 0.929 3.071 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.471 3.529 13 O -0.594 6.594 14 C -0.104 4.104 15 C -0.061 4.061 16 C -0.127 4.127 17 C 0.154 3.846 18 N -0.681 5.681 19 C 0.702 3.298 20 N -0.865 5.865 21 O -0.573 6.573 22 C -0.155 4.155 23 C -0.091 4.091 24 H 0.028 0.972 25 H 0.094 0.906 26 H 0.034 0.966 27 H 0.122 0.878 28 H 0.051 0.949 29 H 0.267 0.733 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.405 0.595 33 H 0.397 0.603 34 H 0.416 0.584 35 H 0.123 0.877 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.243 -11.488 13.313 17.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.036 4.036 3 N -0.145 5.145 4 C -0.420 4.420 5 H 0.123 0.877 6 C -0.175 4.175 7 N -0.510 5.510 8 Si 0.756 3.244 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.260 3.740 13 O -0.481 6.481 14 C -0.108 4.108 15 C -0.081 4.081 16 C -0.148 4.148 17 C 0.059 3.941 18 N -0.329 5.329 19 C 0.401 3.599 20 N -0.434 5.434 21 O -0.448 6.448 22 C -0.176 4.176 23 C -0.110 4.110 24 H 0.047 0.953 25 H 0.112 0.888 26 H 0.053 0.947 27 H 0.139 0.861 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.240 0.760 33 H 0.225 0.775 34 H 0.249 0.751 35 H 0.141 0.859 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.504 -10.047 13.033 16.524 hybrid contribution -0.073 -0.659 -0.328 0.739 sum 1.432 -10.705 12.705 16.675 Atomic orbital electron populations 1.22200 0.96822 0.97934 1.03837 1.22502 0.94492 0.83809 1.02775 1.43755 1.51616 1.12089 1.07075 1.19796 1.44614 0.94826 0.82801 0.87654 1.25312 0.96154 0.96356 0.99649 1.69991 1.38812 1.15667 1.26488 0.85944 0.79439 0.78895 0.80164 1.19878 1.20919 1.19853 1.17767 0.85528 0.87498 0.83174 1.90611 1.57217 1.15678 1.84574 1.20271 0.96344 0.97255 0.96972 1.21039 0.96968 0.97663 0.92441 1.20956 0.99106 0.97229 0.97462 1.17491 0.95100 0.94973 0.86504 1.42401 1.65244 1.14941 1.10340 1.15979 0.78532 0.85170 0.80256 1.42975 1.71036 1.12807 1.16567 1.91029 1.57313 1.13994 1.82501 1.20690 0.96950 1.03308 0.96648 1.21797 0.99698 0.93719 0.95775 0.95279 0.88765 0.94684 0.86097 0.93115 0.92218 0.85260 0.84992 0.76045 0.77531 0.75123 0.85935 0.83347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.35 37.16 0.31 -2.80 16 2 C 0.09 1.94 4.89 -4.04 -0.02 1.92 16 3 N -0.43 -11.13 2.66 -116.01 -0.31 -11.44 16 4 C -0.29 -8.09 9.38 -15.00 -0.14 -8.23 16 5 H 0.11 3.08 7.25 -52.48 -0.38 2.70 16 6 C 0.03 0.68 5.35 -17.45 -0.09 0.59 16 7 N -0.87 -21.41 7.56 55.50 0.42 -20.99 16 8 Si 0.93 20.33 29.59 -169.99 -5.03 15.30 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 C 0.47 12.24 7.30 -12.50 -0.09 12.15 16 13 O -0.59 -17.48 16.50 5.26 0.09 -17.40 16 14 C -0.10 -2.24 5.39 -104.95 -0.57 -2.80 16 15 C -0.06 -1.21 9.61 -39.21 -0.38 -1.59 16 16 C -0.13 -2.21 8.62 -39.46 -0.34 -2.55 16 17 C 0.15 2.31 6.27 -83.72 -0.52 1.79 16 18 N -0.68 -7.45 5.32 -14.21 -0.08 -7.52 16 19 C 0.70 8.40 8.56 -86.92 -0.74 7.65 16 20 N -0.87 -5.60 8.88 27.63 0.25 -5.36 16 21 O -0.57 -9.74 14.87 5.29 0.08 -9.66 16 22 C -0.16 -2.30 9.94 -39.46 -0.39 -2.69 16 23 C -0.09 -1.64 7.34 -39.20 -0.29 -1.93 16 24 H 0.03 0.60 7.50 -51.93 -0.39 0.21 16 25 H 0.09 2.18 6.09 -51.93 -0.32 1.86 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.12 2.92 5.56 -51.93 -0.29 2.63 16 28 H 0.05 1.02 4.24 -51.93 -0.22 0.80 16 29 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 30 H 0.13 2.56 8.04 -52.48 -0.42 2.14 16 31 H 0.13 2.27 6.43 -52.48 -0.34 1.93 16 32 H 0.40 2.76 8.83 -40.82 -0.36 2.40 16 33 H 0.40 1.17 8.85 -40.82 -0.36 0.81 16 34 H 0.42 2.28 8.93 -40.82 -0.36 1.92 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.15 2.67 3.77 -52.49 -0.20 2.48 16 LS Contribution 297.70 15.07 4.49 4.49 Total: -1.00 -34.05 297.70 -6.98 -41.03 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -3.62 Total: 10.04 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -3.27 Total: 1.52 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.28 Total: -45.31 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: 0.17 Total: -27.06 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.05 -6.98 -41.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354184977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.133 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds