Wall clock time and date at job start Mon Mar 30 2020 01:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46877 * 2 1 4 4 C 1.36900 * 119.99962 * 281.75083 * 3 2 1 5 5 H 1.08008 * 119.99861 * 170.08702 * 4 3 2 6 6 C 1.39020 * 120.00268 * 350.08644 * 4 3 2 7 7 N 1.31382 * 119.99618 * 17.33401 * 6 4 3 8 8 Si 1.86798 * 120.00076 * 197.32970 * 6 4 3 9 9 H 1.48498 * 109.46790 * 60.00247 * 8 6 4 10 10 H 1.48506 * 109.46984 * 179.97438 * 8 6 4 11 11 H 1.48490 * 109.47364 * 300.00268 * 8 6 4 12 12 C 1.34782 * 119.99941 * 101.75398 * 3 2 1 13 13 O 1.21622 * 119.99597 * 187.07123 * 12 3 2 14 14 C 1.47469 * 120.00153 * 7.06717 * 12 3 2 15 15 C 1.39814 * 120.07998 * 141.62254 * 14 12 3 16 16 C 1.37644 * 119.91978 * 180.27570 * 15 14 12 17 17 C 1.39149 * 120.07951 * 359.49921 * 16 15 14 18 18 N 1.39434 * 119.92254 * 180.23099 * 17 16 15 19 19 C 1.34773 * 120.00113 * 33.86543 * 18 17 16 20 20 N 1.34776 * 120.00192 * 185.17374 * 19 18 17 21 21 O 1.21585 * 120.00026 * 5.17272 * 19 18 17 22 22 C 1.39152 * 120.15870 * 0.50374 * 17 16 15 23 23 C 1.37645 * 120.08293 * 359.75016 * 22 17 16 24 24 H 1.09002 * 109.46897 * 316.53766 * 1 2 3 25 25 H 1.08992 * 109.47418 * 76.54129 * 1 2 3 26 26 H 1.09003 * 109.46960 * 196.54080 * 1 2 3 27 27 H 1.09004 * 109.47333 * 240.00410 * 2 1 3 28 28 H 1.08999 * 109.47534 * 120.00244 * 2 1 3 29 29 H 0.97008 * 119.99517 * 180.02562 * 7 6 4 30 30 H 1.08003 * 120.04003 * 0.02562 * 15 14 12 31 31 H 1.08003 * 119.96063 * 179.72417 * 16 15 14 32 32 H 0.97008 * 120.00310 * 213.86567 * 18 17 16 33 33 H 0.96996 * 120.00512 * 359.97438 * 20 19 18 34 34 H 0.97006 * 119.99850 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.96112 * 179.72893 * 22 17 16 36 36 H 1.07999 * 120.04024 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.0187 2.1071 -1.1607 5 1 2.2247 3.1670 -1.1348 6 6 1.7541 1.4799 -2.3729 7 7 1.1786 0.2990 -2.3896 8 14 2.2168 2.3163 -3.9778 9 1 3.6826 2.5522 -4.0084 10 1 1.8320 1.4464 -5.1182 11 1 1.5042 3.6148 -4.0827 12 6 2.4670 1.9374 1.1428 13 8 2.7511 3.1196 1.1730 14 6 2.6135 1.1125 2.3564 15 6 3.6992 1.3141 3.2139 16 6 3.8357 0.5384 4.3427 17 6 2.8892 -0.4384 4.6364 18 7 3.0282 -1.2190 5.7834 19 6 3.5669 -0.6879 6.8988 20 7 3.7975 -1.4682 7.9732 21 8 3.8449 0.4951 6.9358 22 6 1.8073 -0.6419 3.7853 23 6 1.6671 0.1265 2.6519 24 1 -0.3633 0.7459 0.7069 25 1 -0.3634 0.2392 -0.9994 26 1 -0.3633 -0.9852 0.2926 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.9943 -0.1388 -3.2354 30 1 4.4321 2.0747 2.9887 31 1 4.6766 0.6906 5.0033 32 1 2.7371 -2.1443 5.7786 33 1 3.5754 -2.4120 7.9440 34 1 4.1849 -1.0859 8.7762 35 1 1.0769 -1.4038 4.0140 36 1 0.8274 -0.0323 1.9915 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354184977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:01 Heat of formation + Delta-G solvation = -25.260498 kcal Electronic energy + Delta-G solvation = -21314.520666 eV Core-core repulsion = 17992.266603 eV Total energy + Delta-G solvation = -3322.254062 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.74582 -40.84997 -38.95866 -37.16295 -35.81854 -34.66917 -33.77717 -32.10443 -31.19095 -30.46493 -27.09508 -24.75108 -23.86058 -23.71791 -22.08494 -21.13314 -19.44599 -19.10425 -18.85915 -18.12698 -17.22206 -16.74501 -16.56823 -16.07636 -15.85503 -15.61797 -15.44247 -15.05897 -14.94278 -14.46635 -14.10359 -13.86252 -13.57890 -13.21011 -12.97146 -12.87757 -12.59140 -12.17254 -12.11413 -12.07520 -11.74028 -11.51985 -11.19525 -10.73519 -10.71574 -10.42358 -9.94980 -9.70136 -9.03814 -8.24185 -5.84700 0.01677 0.44886 1.39517 1.42901 1.52036 1.75186 1.91534 2.18871 2.26776 2.85490 3.01848 3.18652 3.51889 3.91716 3.99878 4.05406 4.37139 4.51825 4.53981 4.62298 4.89205 4.95517 5.06267 5.10083 5.22691 5.25083 5.38204 5.45036 5.56258 5.71264 5.85462 5.96441 5.97100 6.02345 6.10581 6.56094 6.98673 7.16017 7.46616 7.55056 8.03679 8.60535 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039561 B = 0.004119 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.592946 B = 6796.838859 C = 7257.512922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.088 3.912 3 N -0.436 5.436 4 C -0.346 4.346 5 H 0.071 0.929 6 C 0.007 3.993 7 N -0.862 5.862 8 Si 0.988 3.012 9 H -0.279 1.279 10 H -0.262 1.262 11 H -0.276 1.276 12 C 0.453 3.547 13 O -0.650 6.650 14 C -0.137 4.137 15 C -0.074 4.074 16 C -0.132 4.132 17 C 0.175 3.825 18 N -0.665 5.665 19 C 0.697 3.303 20 N -0.835 5.835 21 O -0.627 6.627 22 C -0.134 4.134 23 C -0.090 4.090 24 H 0.021 0.979 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.276 0.724 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.430 0.570 33 H 0.419 0.581 34 H 0.425 0.575 35 H 0.175 0.825 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 -15.236 14.700 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 N -0.151 5.151 4 C -0.474 4.474 5 H 0.089 0.911 6 C -0.196 4.196 7 N -0.501 5.501 8 Si 0.811 3.189 9 H -0.205 1.205 10 H -0.186 1.186 11 H -0.202 1.202 12 C 0.245 3.755 13 O -0.541 6.541 14 C -0.141 4.141 15 C -0.094 4.094 16 C -0.152 4.152 17 C 0.078 3.922 18 N -0.315 5.315 19 C 0.396 3.604 20 N -0.405 5.405 21 O -0.507 6.507 22 C -0.155 4.155 23 C -0.109 4.109 24 H 0.040 0.960 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.122 0.878 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.149 0.851 32 H 0.270 0.730 33 H 0.250 0.750 34 H 0.259 0.741 35 H 0.192 0.808 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.441 -13.945 14.461 20.094 hybrid contribution 0.253 0.374 -0.617 0.765 sum 0.694 -13.570 13.844 19.398 Atomic orbital electron populations 1.22043 0.95403 1.00053 1.02185 1.22590 0.95579 0.81995 1.03232 1.43966 1.51382 1.13148 1.06591 1.19647 1.48711 0.94193 0.84810 0.91123 1.25934 0.95001 0.97139 1.01481 1.70072 1.36792 1.15528 1.27663 0.85097 0.78538 0.78210 0.77029 1.20454 1.18569 1.20184 1.18572 0.84845 0.87487 0.84619 1.90536 1.59524 1.18241 1.85813 1.19978 0.98858 0.99190 0.96050 1.20936 0.96723 0.98239 0.93525 1.20954 1.00047 0.97816 0.96390 1.17540 0.93771 0.93668 0.87228 1.42183 1.64812 1.15703 1.08782 1.16220 0.78204 0.84812 0.81206 1.42713 1.69177 1.13501 1.15116 1.91017 1.59430 1.16697 1.83516 1.21053 0.97093 1.02873 0.94453 1.21812 0.98735 0.93207 0.97182 0.95967 0.91334 0.90484 0.87785 0.90425 0.91335 0.87205 0.85059 0.73036 0.74961 0.74140 0.80811 0.83068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 8.35 71.98 0.60 -5.00 16 2 C 0.09 3.91 4.89 86.38 0.42 4.33 16 3 N -0.44 -23.64 2.66 -639.20 -1.70 -25.34 16 4 C -0.35 -20.19 9.38 84.09 0.79 -19.41 16 5 H 0.07 4.50 7.25 -2.91 -0.02 4.48 16 6 C 0.01 0.37 5.35 84.95 0.45 0.82 16 7 N -0.86 -42.19 7.56 21.68 0.16 -42.03 16 8 Si 0.99 42.17 29.59 68.60 2.03 44.20 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 C 0.45 25.08 7.30 86.68 0.63 25.71 16 13 O -0.65 -41.55 16.50 -4.10 -0.07 -41.61 16 14 C -0.14 -6.04 5.39 -20.08 -0.11 -6.14 16 15 C -0.07 -3.06 9.61 22.51 0.22 -2.84 16 16 C -0.13 -4.50 8.62 22.35 0.19 -4.31 16 17 C 0.17 4.68 6.27 38.37 0.24 4.92 16 18 N -0.66 -11.64 5.32 -317.15 -1.69 -13.33 16 19 C 0.70 14.42 8.56 179.06 1.53 15.95 16 20 N -0.84 -7.48 8.88 -184.75 -1.64 -9.12 16 21 O -0.63 -20.39 14.87 -3.98 -0.06 -20.45 16 22 C -0.13 -3.41 9.94 22.35 0.22 -3.19 16 23 C -0.09 -3.11 7.34 22.51 0.17 -2.95 16 24 H 0.02 0.90 7.50 -2.39 -0.02 0.88 16 25 H 0.07 3.12 6.09 -2.39 -0.01 3.11 16 26 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.10 5.00 5.56 -2.38 -0.01 4.99 16 28 H 0.08 3.02 4.24 -2.39 -0.01 3.01 16 29 H 0.28 12.52 8.31 -92.70 -0.77 11.75 16 30 H 0.11 4.79 8.04 -2.91 -0.02 4.76 16 31 H 0.13 4.52 6.43 -2.91 -0.02 4.50 16 32 H 0.43 3.33 8.83 -92.70 -0.82 2.52 16 33 H 0.42 0.38 8.85 -92.71 -0.82 -0.45 16 34 H 0.42 3.17 8.93 -92.70 -0.83 2.34 16 35 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 36 H 0.15 5.12 3.77 -2.91 -0.01 5.10 16 Total: -1.00 -80.96 297.70 1.11 -79.85 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -1.29 Total: 19.92 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 5.36 Total: 7.91 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -4.86 Total: -89.82 kcal Atomic # 8 Polarization: -61.93 SS G_CDS: -0.13 Total: -62.06 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -80.96 1.11 -79.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354184977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.589 kcal (2) G-P(sol) polarization free energy of solvation -80.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds