Wall clock time and date at job start Mon Mar 30 2020 01:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99615 * 2 1 4 4 N 1.46503 * 109.46837 * 125.00056 * 3 2 1 5 5 C 1.46498 * 119.99797 * 274.92783 * 4 3 2 6 6 C 1.50701 * 109.47442 * 263.07954 * 5 4 3 7 7 H 1.08001 * 119.99739 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00069 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99720 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00123 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47000 * 90.00517 * 10 8 6 12 12 H 1.48498 * 109.47322 * 210.00547 * 10 8 6 13 13 H 1.48502 * 109.47029 * 330.00483 * 10 8 6 14 14 C 1.34778 * 120.00012 * 94.93156 * 4 3 2 15 15 O 1.21357 * 120.00101 * 3.72532 * 14 4 3 16 16 C 1.49310 * 119.99645 * 183.72673 * 14 4 3 17 17 O 1.21418 * 120.00297 * 353.55858 * 16 14 4 18 18 C 1.46929 * 119.99582 * 173.55298 * 16 14 4 19 19 C 1.41566 * 126.49353 * 359.97438 * 18 16 14 20 20 N 1.30344 * 107.99340 * 180.02562 * 19 18 16 21 21 N 1.39909 * 109.04250 * 359.77078 * 20 19 18 22 22 C 1.46500 * 125.69438 * 180.25189 * 21 20 19 23 23 C 1.34123 * 108.60541 * 0.39099 * 21 20 19 24 24 H 1.08006 * 119.99713 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00464 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00270 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47302 * 5.00365 * 3 2 1 28 28 H 1.09003 * 109.46943 * 244.99589 * 3 2 1 29 29 H 1.08999 * 109.47352 * 23.08478 * 5 4 3 30 30 H 1.09005 * 109.47155 * 143.07954 * 5 4 3 31 31 H 0.97001 * 119.99439 * 179.97438 * 9 8 6 32 32 H 1.08006 * 126.00175 * 0.04042 * 19 18 16 33 33 H 1.09001 * 109.46814 * 270.16060 * 22 21 20 34 34 H 1.09004 * 109.47334 * 30.16260 * 22 21 20 35 35 H 1.09007 * 109.46864 * 150.16210 * 22 21 20 36 36 H 1.07997 * 126.32450 * 179.88479 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5287 1.7636 2.4519 6 6 2.8699 3.2175 2.6542 7 1 3.3822 3.7650 1.8770 8 6 2.5288 3.8482 3.8319 9 7 2.8261 5.1172 4.0081 10 14 1.6432 2.9009 5.1764 11 1 2.6412 2.2831 6.0862 12 1 0.7777 3.8287 5.9479 13 1 0.8067 1.8376 4.5640 14 6 4.2772 0.9595 0.9575 15 8 4.6795 0.6669 -0.1494 16 6 5.2043 0.9070 2.1268 17 8 4.8369 1.3103 3.2115 18 6 6.5612 0.3672 1.9647 19 6 7.1293 -0.1377 0.7705 20 7 8.3468 -0.5213 1.0345 21 7 8.6180 -0.2812 2.3859 22 6 9.8815 -0.5706 3.0687 23 6 7.5272 0.2553 2.9526 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5401 0.9352 -0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4026 -0.9314 29 1 1.4488 1.6312 2.5181 30 1 3.0158 1.1655 3.2221 31 1 2.5859 5.5610 4.8365 32 1 6.6400 -0.1949 -0.1907 33 1 9.8532 -1.5831 3.4713 34 1 10.7054 -0.4840 2.3603 35 1 10.0257 0.1402 3.8825 36 1 7.4225 0.5500 3.9863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359398803.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:05 Heat of formation + Delta-G solvation = 55.729273 kcal Electronic energy + Delta-G solvation = -21366.351522 eV Core-core repulsion = 18047.609439 eV Total energy + Delta-G solvation = -3318.742082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.19235 -39.65382 -37.56833 -35.73706 -33.43054 -33.23878 -32.09978 -30.21763 -28.13380 -27.61982 -26.31509 -23.96424 -22.41707 -21.26542 -20.56073 -19.68284 -18.60273 -16.98710 -16.93849 -16.15746 -15.87973 -15.61331 -14.97305 -14.83899 -14.39443 -14.20559 -13.95352 -13.59140 -13.13483 -12.91943 -12.80045 -12.61013 -12.40749 -12.32451 -11.94161 -11.54128 -11.24332 -10.99434 -10.84390 -10.61526 -10.23720 -10.15392 -9.53409 -9.48773 -9.24585 -8.65689 -8.54227 -8.38322 -7.84741 -6.07358 -4.05129 1.30787 2.07876 2.38276 2.45348 2.91890 3.30793 3.35993 3.38243 3.56902 4.03350 4.41772 4.45834 4.78039 4.87942 4.94003 5.18195 5.25044 5.26276 5.27207 5.40888 5.43568 5.64698 5.82080 6.00360 6.08848 6.24085 6.47368 6.68778 6.80594 6.83391 6.88891 6.91967 7.24091 7.57153 7.65836 7.86077 8.07737 8.46618 8.68885 8.95149 9.53160 11.05877 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014316 B = 0.006533 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.401271 B = 4285.124920 C = 5716.244563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C 0.135 3.865 4 N -0.558 5.558 5 C 0.195 3.805 6 C -0.520 4.520 7 H 0.073 0.927 8 C 0.079 3.921 9 N -0.897 5.897 10 Si 0.874 3.126 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.266 1.266 14 C 0.493 3.507 15 O -0.550 6.550 16 C 0.405 3.595 17 O -0.391 6.391 18 C -0.301 4.301 19 C 0.112 3.888 20 N -0.315 5.315 21 N -0.369 5.369 22 C 0.098 3.902 23 C 0.124 3.876 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.030 0.970 30 H 0.061 0.939 31 H 0.264 0.736 32 H 0.208 0.792 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 -12.024 -2.092 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.178 4.178 3 C 0.013 3.987 4 N -0.288 5.288 5 C 0.075 3.925 6 C -0.558 4.558 7 H 0.091 0.909 8 C -0.124 4.124 9 N -0.536 5.536 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.190 1.190 14 C 0.279 3.721 15 O -0.430 6.430 16 C 0.276 3.724 17 O -0.261 6.261 18 C -0.314 4.314 19 C -0.076 4.076 20 N -0.135 5.135 21 N -0.148 5.148 22 C -0.043 4.043 23 C -0.027 4.027 24 H 0.113 0.887 25 H 0.117 0.883 26 H 0.124 0.876 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.224 0.776 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.808 -12.323 -2.312 14.771 hybrid contribution -1.198 0.103 1.233 1.722 sum 6.609 -12.220 -1.079 13.935 Atomic orbital electron populations 1.23813 0.95767 1.01750 1.01346 1.23350 0.96137 0.99091 0.99192 1.20610 0.92362 0.95082 0.90658 1.48036 1.07990 1.60546 1.12236 1.20377 0.95521 0.97383 0.79255 1.21184 1.38836 0.92789 1.03006 0.90853 1.24757 0.95276 0.94615 0.97721 1.69899 1.47213 1.10200 1.26270 0.86887 0.80135 0.80141 0.82769 1.19786 1.21293 1.19043 1.20521 0.83393 0.78541 0.89672 1.90535 1.76104 1.50690 1.25690 1.21282 0.86025 0.76698 0.88414 1.90670 1.74865 1.32721 1.27824 1.20654 0.97789 1.18362 0.94636 1.24707 0.90305 0.92772 0.99773 1.77155 1.18300 1.25799 0.92233 1.48396 1.11612 1.46914 1.07831 1.21939 0.82633 1.02443 0.97257 1.23207 0.86093 0.93888 0.99550 0.88725 0.88290 0.87609 0.89479 0.89052 0.95236 0.92209 0.92628 0.77593 0.90473 0.89011 0.89163 0.79468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 14.32 29.01 0.42 -2.10 16 2 C -0.16 -2.42 9.84 -36.03 -0.35 -2.78 16 3 C 0.14 2.40 5.90 -5.19 -0.03 2.37 16 4 N -0.56 -11.74 2.46 -177.00 -0.44 -12.17 16 5 C 0.19 4.59 3.86 -5.19 -0.02 4.57 16 6 C -0.52 -14.43 8.84 -34.44 -0.30 -14.73 16 7 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 8 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 9 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 10 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 14 C 0.49 10.26 7.64 -11.65 -0.09 10.17 16 15 O -0.55 -11.22 13.77 5.49 0.08 -11.15 16 16 C 0.40 8.20 7.07 -31.46 -0.22 7.98 16 17 O -0.39 -8.85 12.92 5.44 0.07 -8.78 16 18 C -0.30 -5.20 6.12 -104.97 -0.64 -5.85 16 19 C 0.11 1.83 11.13 -16.91 -0.19 1.64 16 20 N -0.31 -4.87 12.48 30.90 0.39 -4.48 16 21 N -0.37 -4.76 3.97 -67.47 -0.27 -5.03 16 22 C 0.10 0.73 11.44 59.85 0.68 1.41 16 23 C 0.12 1.76 11.32 -16.41 -0.19 1.57 16 24 H 0.09 1.08 8.06 -52.48 -0.42 0.65 16 25 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 26 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.09 1.53 7.76 -51.93 -0.40 1.13 16 28 H 0.09 1.59 7.24 -51.93 -0.38 1.21 16 29 H 0.03 0.68 7.08 -51.93 -0.37 0.32 16 30 H 0.06 1.45 4.86 -51.93 -0.25 1.19 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.21 3.30 6.28 -52.48 -0.33 2.97 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 316.75 15.07 4.77 4.77 Total: -1.00 -33.62 316.75 -4.60 -38.21 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.27 Total: 2.08 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.03 Total: 6.40 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.46 Total: -48.08 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.15 Total: -19.92 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.62 -4.60 -38.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359398803.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.944 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds