Wall clock time and date at job start Mon Mar 30 2020 01:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99615 * 2 1 4 4 N 1.46503 * 109.46837 * 125.00056 * 3 2 1 5 5 C 1.46498 * 119.99797 * 274.92783 * 4 3 2 6 6 C 1.50701 * 109.47442 * 263.07954 * 5 4 3 7 7 H 1.08001 * 119.99739 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00069 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99720 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00123 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47000 * 90.00517 * 10 8 6 12 12 H 1.48498 * 109.47322 * 210.00547 * 10 8 6 13 13 H 1.48502 * 109.47029 * 330.00483 * 10 8 6 14 14 C 1.34778 * 120.00012 * 94.93156 * 4 3 2 15 15 O 1.21357 * 120.00101 * 3.72532 * 14 4 3 16 16 C 1.49310 * 119.99645 * 183.72673 * 14 4 3 17 17 O 1.21418 * 120.00297 * 353.55858 * 16 14 4 18 18 C 1.46929 * 119.99582 * 173.55298 * 16 14 4 19 19 C 1.41566 * 126.49353 * 359.97438 * 18 16 14 20 20 N 1.30344 * 107.99340 * 180.02562 * 19 18 16 21 21 N 1.39909 * 109.04250 * 359.77078 * 20 19 18 22 22 C 1.46500 * 125.69438 * 180.25189 * 21 20 19 23 23 C 1.34123 * 108.60541 * 0.39099 * 21 20 19 24 24 H 1.08006 * 119.99713 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00464 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00270 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47302 * 5.00365 * 3 2 1 28 28 H 1.09003 * 109.46943 * 244.99589 * 3 2 1 29 29 H 1.08999 * 109.47352 * 23.08478 * 5 4 3 30 30 H 1.09005 * 109.47155 * 143.07954 * 5 4 3 31 31 H 0.97001 * 119.99439 * 179.97438 * 9 8 6 32 32 H 1.08006 * 126.00175 * 0.04042 * 19 18 16 33 33 H 1.09001 * 109.46814 * 270.16060 * 22 21 20 34 34 H 1.09004 * 109.47334 * 30.16260 * 22 21 20 35 35 H 1.09007 * 109.46864 * 150.16210 * 22 21 20 36 36 H 1.07997 * 126.32450 * 179.88479 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5287 1.7636 2.4519 6 6 2.8699 3.2175 2.6542 7 1 3.3822 3.7650 1.8770 8 6 2.5288 3.8482 3.8319 9 7 2.8261 5.1172 4.0081 10 14 1.6432 2.9009 5.1764 11 1 2.6412 2.2831 6.0862 12 1 0.7777 3.8287 5.9479 13 1 0.8067 1.8376 4.5640 14 6 4.2772 0.9595 0.9575 15 8 4.6795 0.6669 -0.1494 16 6 5.2043 0.9070 2.1268 17 8 4.8369 1.3103 3.2115 18 6 6.5612 0.3672 1.9647 19 6 7.1293 -0.1377 0.7705 20 7 8.3468 -0.5213 1.0345 21 7 8.6180 -0.2812 2.3859 22 6 9.8815 -0.5706 3.0687 23 6 7.5272 0.2553 2.9526 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5401 0.9352 -0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4026 -0.9314 29 1 1.4488 1.6312 2.5181 30 1 3.0158 1.1655 3.2221 31 1 2.5859 5.5610 4.8365 32 1 6.6400 -0.1949 -0.1907 33 1 9.8532 -1.5831 3.4713 34 1 10.7054 -0.4840 2.3603 35 1 10.0257 0.1402 3.8825 36 1 7.4225 0.5500 3.9863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359398803.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:04 Heat of formation + Delta-G solvation = 33.005127 kcal Electronic energy + Delta-G solvation = -21367.336915 eV Core-core repulsion = 18047.609439 eV Total energy + Delta-G solvation = -3319.727475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.41654 -41.20218 -39.15959 -37.30596 -35.00865 -34.36815 -33.88683 -31.46351 -30.03194 -28.75588 -27.59691 -25.43868 -24.24553 -22.56634 -21.74905 -20.91223 -20.04134 -19.07976 -18.33135 -17.77168 -17.29400 -16.80197 -16.36244 -16.23231 -15.94065 -15.75105 -15.25970 -15.06050 -14.68775 -14.30096 -14.05399 -13.95553 -13.76284 -13.46207 -13.41148 -13.15658 -12.77779 -12.63131 -12.30706 -12.17283 -11.94543 -11.78155 -11.60982 -10.75952 -10.59216 -10.47715 -9.99998 -9.77142 -9.54060 -8.25194 -6.28230 -0.11375 0.82756 1.22971 1.39817 1.43224 1.46214 1.50172 1.50842 2.09596 2.39072 2.50492 3.11642 3.15117 3.63730 3.81401 4.05682 4.07941 4.16575 4.24338 4.43573 4.49939 4.58393 4.68355 4.70448 4.73144 4.81213 4.98431 5.07344 5.41597 5.44441 5.50969 5.69024 5.84415 5.86767 6.13009 6.26467 6.46825 6.55835 6.70294 7.05629 7.34661 8.91874 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014316 B = 0.006533 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.401271 B = 4285.124920 C = 5716.244563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C 0.132 3.868 4 N -0.566 5.566 5 C 0.208 3.792 6 C -0.518 4.518 7 H 0.024 0.976 8 C 0.021 3.979 9 N -0.947 5.947 10 Si 0.940 3.060 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.240 1.240 14 C 0.484 3.516 15 O -0.550 6.550 16 C 0.407 3.593 17 O -0.427 6.427 18 C -0.338 4.338 19 C 0.108 3.892 20 N -0.326 5.326 21 N -0.356 5.356 22 C 0.084 3.916 23 C 0.144 3.856 24 H 0.122 0.878 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.266 0.734 32 H 0.202 0.798 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.638 -14.209 -0.924 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.200 4.200 3 C 0.011 3.989 4 N -0.296 5.296 5 C 0.087 3.913 6 C -0.556 4.556 7 H 0.043 0.957 8 C -0.177 4.177 9 N -0.588 5.588 10 Si 0.763 3.237 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.163 1.163 14 C 0.269 3.731 15 O -0.431 6.431 16 C 0.281 3.719 17 O -0.300 6.300 18 C -0.351 4.351 19 C -0.080 4.080 20 N -0.147 5.147 21 N -0.133 5.133 22 C -0.054 4.054 23 C -0.010 4.010 24 H 0.140 0.860 25 H 0.122 0.878 26 H 0.126 0.874 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.218 0.782 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.138 0.862 36 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 7.862 -14.548 -1.199 16.579 hybrid contribution -1.046 0.784 0.770 1.517 sum 6.816 -13.764 -0.429 15.365 Atomic orbital electron populations 1.24081 0.94982 1.03272 0.97730 1.23139 0.96746 0.97627 1.02438 1.20746 0.92021 0.96761 0.89411 1.48093 1.08714 1.60573 1.12247 1.20068 0.95929 0.94564 0.80754 1.21302 1.37826 0.94745 1.01748 0.95739 1.25653 0.96228 0.95437 1.00362 1.70054 1.49209 1.12252 1.27283 0.85831 0.79206 0.79280 0.79397 1.19374 1.20787 1.16329 1.20857 0.83572 0.78478 0.90172 1.90520 1.76078 1.50712 1.25791 1.21496 0.87018 0.75774 0.87577 1.90633 1.75808 1.34986 1.28546 1.20576 0.97307 1.20952 0.96274 1.24607 0.90707 0.93088 0.99552 1.77108 1.17650 1.25948 0.93973 1.48862 1.12739 1.44792 1.06952 1.22476 0.80286 1.04681 0.97967 1.23580 0.85415 0.91990 1.00043 0.86034 0.87802 0.87402 0.89817 0.89454 0.94056 0.92014 0.92484 0.78169 0.88243 0.88092 0.86244 0.76708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 14.32 67.78 0.97 -2.94 16 2 C -0.18 -5.29 9.84 25.65 0.25 -5.03 16 3 C 0.13 4.72 5.90 85.63 0.50 5.23 16 4 N -0.57 -24.20 2.46 -832.25 -2.05 -26.25 16 5 C 0.21 9.82 3.86 85.63 0.33 10.15 16 6 C -0.52 -29.57 8.84 25.60 0.23 -29.34 16 7 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 8 C 0.02 1.21 5.47 84.65 0.46 1.68 16 9 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 10 Si 0.94 43.34 27.47 68.60 1.88 45.22 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 14 C 0.48 20.63 7.64 87.23 0.67 21.29 16 15 O -0.55 -23.06 13.77 -3.27 -0.05 -23.11 16 16 C 0.41 16.82 7.07 27.53 0.19 17.01 16 17 O -0.43 -19.60 12.92 -3.46 -0.04 -19.64 16 18 C -0.34 -11.62 6.12 -20.09 -0.12 -11.74 16 19 C 0.11 3.52 11.13 85.73 0.95 4.47 16 20 N -0.33 -9.69 12.48 -56.14 -0.70 -10.39 16 21 N -0.36 -8.31 3.97 -367.37 -1.46 -9.77 16 22 C 0.08 0.94 11.44 127.77 1.46 2.40 16 23 C 0.14 3.81 11.32 84.43 0.96 4.76 16 24 H 0.12 2.30 8.06 -2.91 -0.02 2.27 16 25 H 0.10 2.40 7.84 -2.91 -0.02 2.38 16 26 H 0.11 3.11 8.06 -2.91 -0.02 3.09 16 27 H 0.08 2.98 7.76 -2.39 -0.02 2.96 16 28 H 0.09 3.12 7.24 -2.39 -0.02 3.10 16 29 H 0.04 1.85 7.08 -2.39 -0.02 1.83 16 30 H 0.06 2.96 4.86 -2.38 -0.01 2.95 16 31 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.20 6.60 6.28 -2.91 -0.02 6.58 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.22 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -75.09 316.75 5.78 -69.31 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 1.04 Total: 15.38 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 6.86 Total: 17.94 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -3.91 Total: -105.11 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -0.09 Total: -42.75 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -75.09 5.78 -69.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359398803.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.315 kcal (2) G-P(sol) polarization free energy of solvation -75.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds