Wall clock time and date at job start Mon Mar 30 2020 02:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00121 * 2 1 4 4 N 1.46501 * 109.46855 * 125.00135 * 3 2 1 5 5 C 1.46503 * 119.99781 * 265.24062 * 4 3 2 6 6 C 1.50704 * 109.46895 * 270.00122 * 5 4 3 7 7 H 1.07995 * 120.00297 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99548 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00137 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99792 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47248 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47191 * 120.00023 * 10 8 6 13 13 H 1.48501 * 109.47241 * 240.00174 * 10 8 6 14 14 C 1.34778 * 120.00185 * 85.24448 * 4 3 2 15 15 O 1.21500 * 120.00033 * 174.55218 * 14 4 3 16 16 C 1.48294 * 119.99892 * 354.27939 * 14 4 3 17 17 N 1.32540 * 119.11010 * 353.43434 * 16 14 4 18 18 C 1.31957 * 120.83309 * 179.71621 * 17 16 14 19 19 C 1.39453 * 119.08355 * 0.54598 * 18 17 16 20 20 O 1.35728 * 120.80601 * 179.71146 * 19 18 17 21 21 C 1.42901 * 117.00542 * 0.02562 * 20 19 18 22 22 C 1.39443 * 118.38079 * 359.72457 * 19 18 17 23 23 N 1.31952 * 119.08553 * 0.02562 * 22 19 18 24 24 H 1.08004 * 119.99710 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99963 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99710 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47179 * 4.99955 * 3 2 1 28 28 H 1.09007 * 109.46825 * 244.99682 * 3 2 1 29 29 H 1.08994 * 109.47160 * 30.00473 * 5 4 3 30 30 H 1.09000 * 109.46753 * 150.00465 * 5 4 3 31 31 H 0.97000 * 119.99962 * 180.02562 * 9 8 6 32 32 H 1.08004 * 120.45991 * 180.27180 * 18 17 16 33 33 H 1.09001 * 109.47121 * 300.00821 * 21 20 19 34 34 H 1.09002 * 109.46439 * 60.00409 * 21 20 19 35 35 H 1.08995 * 109.47347 * 180.02562 * 21 20 19 36 36 H 1.07999 * 120.45598 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5942 1.9590 2.3936 6 6 2.9739 3.4173 2.3722 7 1 3.4634 3.8351 1.5050 8 6 2.6952 4.2182 3.4594 9 7 2.0986 3.7094 4.5152 10 14 3.1652 6.0259 3.4326 11 1 3.8192 6.3482 2.1389 12 1 1.9447 6.8570 3.5902 13 1 4.1047 6.3097 4.5470 14 6 4.2173 0.7794 1.0111 15 8 5.0241 0.8877 1.9131 16 6 4.5766 0.0342 -0.2196 17 7 3.6428 -0.1910 -1.1328 18 6 3.9263 -0.8456 -2.2429 19 6 5.2255 -1.3116 -2.4421 20 8 5.5543 -1.9940 -3.5684 21 6 4.5144 -2.2061 -4.5253 22 6 6.1785 -1.0596 -1.4558 23 7 5.8215 -0.3936 -0.3741 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4025 -0.9314 29 1 1.5156 1.8662 2.5200 30 1 3.1010 1.4637 3.2219 31 1 1.9022 4.2730 5.2799 32 1 3.1617 -1.0220 -2.9850 33 1 3.7064 -2.7740 -4.0640 34 1 4.1332 -1.2436 -4.8668 35 1 4.9103 -2.7625 -5.3748 36 1 7.1946 -1.4055 -1.5753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359432358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:05 Heat of formation + Delta-G solvation = 31.576744 kcal Electronic energy + Delta-G solvation = -21309.781104 eV Core-core repulsion = 17989.991690 eV Total energy + Delta-G solvation = -3319.789415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.50851 -39.31486 -38.17213 -35.80274 -33.84008 -33.12200 -32.01861 -31.28188 -28.38279 -27.41206 -25.67226 -24.65680 -24.36123 -22.56386 -20.16115 -19.25701 -18.49083 -18.18156 -17.12252 -16.48810 -16.37896 -15.46689 -15.19875 -15.01557 -14.80087 -14.49179 -14.17296 -13.79209 -13.52568 -13.10838 -12.84876 -12.33096 -12.19779 -11.91643 -11.70006 -11.31203 -11.20300 -11.05678 -10.83358 -10.72637 -10.56566 -10.15735 -9.59391 -9.23740 -9.13086 -8.97470 -8.82049 -8.40220 -7.67541 -6.01112 -4.05552 0.53480 0.88618 2.64364 2.69027 3.07827 3.33428 3.40792 3.43095 3.49078 3.94441 4.02520 4.09693 4.43098 4.46532 4.59846 4.70103 4.76865 5.02450 5.09560 5.33590 5.43165 5.45912 5.63120 5.83623 5.98837 6.26537 6.44294 6.51803 6.87425 6.99752 7.03028 7.16607 7.43316 7.54696 7.86317 7.96515 8.24353 8.35758 8.87498 9.03526 9.59112 11.07084 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024080 B = 0.004715 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.531550 B = 5937.383702 C = 6528.849913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C 0.142 3.858 4 N -0.570 5.570 5 C 0.248 3.752 6 C -0.525 4.525 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.570 3.430 15 O -0.504 6.504 16 C 0.253 3.747 17 N -0.443 5.443 18 C 0.055 3.945 19 C 0.031 3.969 20 O -0.302 6.302 21 C 0.020 3.980 22 C 0.121 3.879 23 N -0.430 5.430 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.039 0.961 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.173 0.827 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 -12.115 -19.052 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.148 4.148 3 C 0.019 3.981 4 N -0.301 5.301 5 C 0.129 3.871 6 C -0.564 4.564 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.351 3.649 15 O -0.376 6.376 16 C -0.016 4.016 17 N -0.160 5.160 18 C -0.113 4.113 19 C -0.020 4.020 20 O -0.212 6.212 21 C -0.075 4.075 22 C -0.049 4.049 23 N -0.144 5.144 24 H 0.114 0.886 25 H 0.107 0.893 26 H 0.119 0.881 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.190 0.810 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.735 -11.556 -17.551 21.026 hybrid contribution 0.110 0.396 -1.027 1.107 sum 0.845 -11.160 -18.578 21.689 Atomic orbital electron populations 1.23737 0.95882 1.01279 1.03530 1.23257 0.95290 0.99183 0.97061 1.20813 0.92492 0.94737 0.90061 1.48107 1.12054 1.54162 1.15802 1.19411 0.96012 0.92611 0.79035 1.21458 1.39066 0.93829 1.02057 0.92262 1.24921 0.95041 0.98929 0.95135 1.69943 1.41790 1.36041 1.05551 0.86429 0.78112 0.84652 0.78159 1.19796 1.20995 1.20845 1.17150 0.83331 0.80260 0.84151 1.90799 1.48481 1.59055 1.39314 1.23414 0.85487 0.97203 0.95457 1.69035 1.35109 1.10781 1.01109 1.23590 0.94372 0.96430 0.96898 1.21211 0.96239 0.95167 0.89368 1.86066 1.38249 1.69783 1.27122 1.23206 0.91030 1.01911 0.91316 1.22884 0.99925 0.95103 0.86971 1.68351 1.18792 1.07044 1.20211 0.88612 0.89275 0.88120 0.90210 0.88988 0.94317 0.93746 0.92759 0.80972 0.92120 0.92078 0.87581 0.80320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.86 14.32 29.01 0.42 -2.44 16 2 C -0.13 -2.00 8.53 -36.03 -0.31 -2.31 16 3 C 0.14 2.55 5.43 -5.19 -0.03 2.52 16 4 N -0.57 -12.87 2.45 -177.38 -0.43 -13.30 16 5 C 0.25 6.62 5.10 -5.19 -0.03 6.60 16 6 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 7 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 10 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.57 13.15 7.64 -12.12 -0.09 13.05 16 15 O -0.50 -13.66 16.50 5.37 0.09 -13.58 16 16 C 0.25 4.69 7.41 -157.05 -1.16 3.53 16 17 N -0.44 -6.61 4.18 -11.03 -0.05 -6.65 16 18 C 0.05 0.60 10.31 -17.05 -0.18 0.43 16 19 C 0.03 0.34 6.75 -38.68 -0.26 0.08 16 20 O -0.30 -2.61 10.51 -18.89 -0.20 -2.81 16 21 C 0.02 0.10 9.84 101.05 0.99 1.09 16 22 C 0.12 1.54 11.28 -17.05 -0.19 1.34 16 23 N -0.43 -7.51 10.12 -11.03 -0.11 -7.62 16 24 H 0.10 1.30 7.84 -52.48 -0.41 0.89 16 25 H 0.09 1.07 8.06 -52.49 -0.42 0.65 16 26 H 0.10 1.58 6.98 -52.48 -0.37 1.21 16 27 H 0.08 1.45 7.69 -51.93 -0.40 1.05 16 28 H 0.09 1.54 5.74 -51.93 -0.30 1.24 16 29 H 0.04 1.04 8.07 -51.93 -0.42 0.62 16 30 H 0.04 1.32 7.50 -51.93 -0.39 0.93 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 32 H 0.17 1.24 6.47 -52.48 -0.34 0.90 16 33 H 0.06 0.23 7.71 -51.93 -0.40 -0.17 16 34 H 0.06 0.23 7.71 -51.93 -0.40 -0.17 16 35 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 315.42 15.07 4.75 4.75 Total: -1.00 -34.81 315.42 -5.73 -40.54 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.24 Total: -2.56 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -1.26 Total: 10.11 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.14 Total: -53.59 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.11 Total: -16.38 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.81 -5.73 -40.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359432358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.118 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds